Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 8922477
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E
[Homo sapiens]
(708 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Ho... 1420 0.0
gi|5453734 MAD4 [Homo sapiens] 42 0.003
gi|33383237 minichromosome maintenance complex component 10 isof... 40 0.010
gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide i... 39 0.022
gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide iso... 39 0.022
gi|157671951 solute carrier family 4, anion exchanger, member 3 ... 38 0.037
gi|33383235 minichromosome maintenance complex component 10 isof... 37 0.048
gi|4557657 immature colon carcinoma transcript 1 [Homo sapiens] 37 0.048
gi|45504371 family with sequence similarity 9, member B [Homo sa... 37 0.063
gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens] 37 0.063
gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens] 37 0.063
gi|82775371 coiled-coil domain containing 93 [Homo sapiens] 37 0.082
gi|157671953 solute carrier family 4, anion exchanger, member 3 ... 37 0.082
gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo ... 36 0.11
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 36 0.11
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 35 0.18
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 35 0.18
gi|215422388 death-domain associated protein isoform a [Homo sap... 35 0.18
gi|215422366 death-domain associated protein isoform b [Homo sap... 35 0.18
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 35 0.24
gi|13376339 plasticity-related protein 2 [Homo sapiens] 35 0.24
gi|22758136 MAP7 domain containing 2 [Homo sapiens] 35 0.31
gi|8923771 ELG protein isoform b [Homo sapiens] 34 0.41
gi|166295179 ELG protein isoform a [Homo sapiens] 34 0.41
gi|194688135 high-mobility group box 2 [Homo sapiens] 34 0.53
gi|194688133 high-mobility group box 2 [Homo sapiens] 34 0.53
gi|11321591 high-mobility group box 2 [Homo sapiens] 34 0.53
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 33 0.70
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 33 0.70
gi|153085395 histone deacetylase 4 [Homo sapiens] 33 0.70
>gi|8922477 polymerase (RNA) III (DNA directed) polypeptide E [Homo
sapiens]
Length = 708
Score = 1420 bits (3677), Expect = 0.0
Identities = 708/708 (100%), Positives = 708/708 (100%)
Query: 1 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM 60
MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM
Sbjct: 1 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQKVELEM 60
Query: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR
Sbjct: 61 AIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYR 120
Query: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP
Sbjct: 121 QGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRP 180
Query: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK 240
ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK
Sbjct: 181 ESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVK 240
Query: 241 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL 300
SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL
Sbjct: 241 SPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSL 300
Query: 301 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF 360
LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF
Sbjct: 301 LGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKF 360
Query: 361 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH 420
TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH
Sbjct: 361 TQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQRQH 420
Query: 421 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ 480
MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ
Sbjct: 421 MLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQ 480
Query: 481 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA 540
RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA
Sbjct: 481 RRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAA 540
Query: 541 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS 600
GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS
Sbjct: 541 GTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLPPGHTLFS 600
Query: 601 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKN 660
GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKN
Sbjct: 601 GISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKN 660
Query: 661 YRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 708
YRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS
Sbjct: 661 YRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 708
>gi|5453734 MAD4 [Homo sapiens]
Length = 209
Score = 41.6 bits (96), Expect = 0.003
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 30/155 (19%)
Query: 397 GWEFILPYDGEF----------IKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPD 446
G+ +LP+DG+F ++K P+ + L +AKL +K+ +P PD
Sbjct: 26 GYASVLPFDGDFAREKTKAAGLVRKAPNNRSSHNELEKHRRAKLRLYLEQLKQLVPLGPD 85
Query: 447 ------------AQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPAVPPG 494
A+ L D+R K + QQ H L+R L EQL V +V
Sbjct: 86 STRHTTLSLLKRAKVHIKKLEEQDRRALSIKEQLQQEHRFLKRRL----EQLSVQSVE-- 139
Query: 495 VRIKEEPV-SEEGEEDEEQEAEEEPMDTSPSGLHS 528
R++ + S +D EQE + E M+ P L S
Sbjct: 140 -RVRTDSTGSAVSTDDSEQEVDIEGMEFGPGELDS 173
>gi|33383237 minichromosome maintenance complex component 10 isoform
1 [Homo sapiens]
Length = 875
Score = 39.7 bits (91), Expect = 0.010
Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 28/213 (13%)
Query: 460 RIQVAKTKAQQNHALLERELQRRKE------QLRVPAVPPGVRI----KEEPVSEEGEED 509
R+Q + + L ER +QR +E +L VPA+P R+ K P +
Sbjct: 146 RLQKSPVEKSPRPPLKERRVQRIQESTCFSAELDVPALPRTKRVARTPKASPPDPKSSSS 205
Query: 510 EEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEAT 569
A +P+ T + +G+ G+ GT +G Q P+ E AF
Sbjct: 206 RMTSAPSQPLQT----ISRNKPSGITRGQIVGTPGSSGETTQ-----PICVE--AFSGLR 254
Query: 570 FQRQFVLTLSELKRLFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAA 629
+R V + K++ L L S I ++M ++ + V T
Sbjct: 255 LRRPRVSSTEMNKKMTGRKLIRL-------SQIKEKMAREKLEEIDWVTFGVILKKVTPQ 307
Query: 630 SPDEQKVFALWESGDMSDQHRQVLLEIFSKNYR 662
S + K F++W+ D+ D + V L +F + ++
Sbjct: 308 SVNSGKTFSIWKLNDLRDLTQCVSLFLFGEVHK 340
>gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform A [Homo sapiens]
Length = 357
Score = 38.5 bits (88), Expect = 0.022
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 467 KAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSG 525
+A QN+ L E + +E+ RV VP + +EE EE EE+EE+E EEE P+G
Sbjct: 26 EANQNY--LADEEEEAEEEARVTVVP---KSEEEEEEEEKEEEEEEEKEEEEGQGQPTG 79
>gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform B [Homo sapiens]
Length = 353
Score = 38.5 bits (88), Expect = 0.022
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 467 KAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSG 525
+A QN+ L E + +E+ RV VP + +EE EE EE+EE+E EEE P+G
Sbjct: 26 EANQNY--LADEEEEAEEEARVTVVP---KSEEEEEEEEKEEEEEEEKEEEEGQGQPTG 79
>gi|157671951 solute carrier family 4, anion exchanger, member 3
isoform 1 [Homo sapiens]
Length = 1232
Score = 37.7 bits (86), Expect = 0.037
Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 28/105 (26%)
Query: 480 QRRKEQLRVP---AVPP-----GVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKL- 530
+R+KE+ P PP G + EE EE EE+EE E+E EP++ PSG K
Sbjct: 109 KRKKEKTSAPPSEGTPPIQEEGGAGVDEE---EEEEEEEEGESEAEPVEPPPSGTPQKAK 165
Query: 531 ---------ANGLPLGRAAGT---DSFNGH---PPQGCASTPVAR 560
+ GLP GRAA T S H PQ +S+P R
Sbjct: 166 FSIGSDEDDSPGLP-GRAAVTKPLPSVGPHTDKSPQHSSSSPSPR 209
>gi|33383235 minichromosome maintenance complex component 10 isoform
2 [Homo sapiens]
Length = 874
Score = 37.4 bits (85), Expect = 0.048
Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 28/199 (14%)
Query: 474 LLERELQRRKE------QLRVPAVPPGVRI----KEEPVSEEGEEDEEQEAEEEPMDTSP 523
L ER +QR +E +L VPA+P R+ K P + A +P+ T
Sbjct: 159 LKERRVQRIQESTCFSAELDVPALPRTKRVARTPKASPPDPKSSSSRMTSAPSQPLQT-- 216
Query: 524 SGLHSKLANGLPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKR 583
+ +G+ G+ GT +G Q P+ E AF +R V + K+
Sbjct: 217 --ISRNKPSGITRGQIVGTPGSSGETTQ-----PICVE--AFSGLRLRRPRVSSTEMNKK 267
Query: 584 LFNLHLASLPPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESG 643
+ L L S I ++M ++ + V T S + K F++W+
Sbjct: 268 MTGRKLIRL-------SQIKEKMAREKLEEIDWVTFGVILKKVTPQSVNSGKTFSIWKLN 320
Query: 644 DMSDQHRQVLLEIFSKNYR 662
D+ D + V L +F + ++
Sbjct: 321 DLRDLTQCVSLFLFGEVHK 339
>gi|4557657 immature colon carcinoma transcript 1 [Homo sapiens]
Length = 206
Score = 37.4 bits (85), Expect = 0.048
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 54 QKVELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSR 113
++ + ++ +D L +YCRS G + +SK + +++ + R
Sbjct: 66 KQADSDIPLDRLTISYCRSSGPG---------GQNVNKVNSKAEVRFHLATAEWIAEPVR 116
Query: 114 YAAALY------RQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAE 167
A+ R GEL LT Q R + AD + R+ EA + ++ +
Sbjct: 117 QKIAITHKNKINRLGELILTSESSRYQFR------NLADCLQKIRDMITEASQTPKEPTK 170
Query: 168 DDVKQITVRFSRPESEQARQRRVQS 192
+DVK +R E+ RQ+R+ S
Sbjct: 171 EDVKLHRIRIENMNRERLRQKRIHS 195
>gi|45504371 family with sequence similarity 9, member B [Homo
sapiens]
Length = 186
Score = 37.0 bits (84), Expect = 0.063
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 10/60 (16%)
Query: 464 AKTKAQQNHALLERELQRRKEQ----LRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPM 519
+KTK + HAL +++L+R+K L++ + + EE +++E +E+EE+E EEE +
Sbjct: 77 SKTKNKSKHALRKKQLKRQKRDYIHSLKL------LNVLEEYITDEQKEEEEEEGEEEEL 130
>gi|21361766 zinc finger protein 692 isoform 2 [Homo sapiens]
Length = 519
Score = 37.0 bits (84), Expect = 0.063
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 445 PDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPA-VPPGVRIKEEPVS 503
P PA L +R ++ + Q A LE E R ++ R+P V P P
Sbjct: 130 PSEAPKPASLPHTTRRSWCSEATSGQELADLESEHDERTQEARLPRRVGPPPETFPPPGE 189
Query: 504 EEGEEDEEQEAEEEPM 519
EEGEE+E+ + +EE M
Sbjct: 190 EEGEEEEDNDEDEEEM 205
>gi|209862873 zinc finger protein 692 isoform 1 [Homo sapiens]
Length = 524
Score = 37.0 bits (84), Expect = 0.063
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 445 PDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQRRKEQLRVPA-VPPGVRIKEEPVS 503
P PA L +R ++ + Q A LE E R ++ R+P V P P
Sbjct: 135 PSEAPKPASLPHTTRRSWCSEATSGQELADLESEHDERTQEARLPRRVGPPPETFPPPGE 194
Query: 504 EEGEEDEEQEAEEEPM 519
EEGEE+E+ + +EE M
Sbjct: 195 EEGEEEEDNDEDEEEM 210
>gi|82775371 coiled-coil domain containing 93 [Homo sapiens]
Length = 631
Score = 36.6 bits (83), Expect = 0.082
Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 48/228 (21%)
Query: 340 PHSGVPAEVLCRGRDFVMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWE 399
PH P ++ +G DF+ F +W+V++ + T E++ D++ +V + K +
Sbjct: 100 PHQLEPHQI--QGMDFIHI-FPVVQWLVKRAIET-----KEEMGDYIRSYSVSQFQKTYS 151
Query: 400 FILPYDGEFIKKHPDVVQ------------RQHMLWTGIQAKLEKV-------------Y 434
LP D +FIK+ ++ R++ G + L++ Y
Sbjct: 152 --LPEDDDFIKRKEKAIKTVVDLSEVYKPRRKYKRHQGAEELLDEESRIHATLLEYGRRY 209
Query: 435 NLVKET-MPKKPDAQSG-PAGLVCGD-----QRIQVAKTKAQQNHALLERELQRRKEQLR 487
+++ M K D ++ PAGL + + ++ + Q+ +L+ + E+ R
Sbjct: 210 GFSRQSKMEKAEDKKTALPAGLSATEKADAHEEDELRAAEEQRIQSLMTKMTAMANEESR 269
Query: 488 VPAVPPGVRIK------EEPVSEEGEEDEEQEAEEEPMDTSPSGLHSK 529
+ A G + ++ VSE E+ E AEE P S LH +
Sbjct: 270 LTASSVGQIVGLCSAEIKQIVSEYAEKQSELSAEESPEKLGTSQLHRR 317
>gi|157671953 solute carrier family 4, anion exchanger, member 3
isoform 2 [Homo sapiens]
Length = 1259
Score = 36.6 bits (83), Expect = 0.082
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 22/81 (27%)
Query: 480 QRRKEQLRVP---AVPP-----GVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKL- 530
+R+KE+ P PP G + EE EE EE+EE E+E EP++ PSG K
Sbjct: 109 KRKKEKTSAPPSEGTPPIQEEGGAGVDEE---EEEEEEEEGESEAEPVEPPPSGTPQKAK 165
Query: 531 ---------ANGLPLGRAAGT 542
+ GLP GRAA T
Sbjct: 166 FSIGSDEDDSPGLP-GRAAVT 185
>gi|239745093 PREDICTED: hypothetical protein XP_002343359 [Homo
sapiens]
Length = 142
Score = 36.2 bits (82), Expect = 0.11
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 460 RIQVAKTKAQQNHALLE--RELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEE 517
R +A T A+++ E RE +RR+E+ R G R ++E EE EE+EE+E EEE
Sbjct: 54 RHSMAGTSARKSQRREEKRREEKRREEKRREEKRREGKRREKEEEKEEEEEEEEEEEEEE 113
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 36.2 bits (82), Expect = 0.11
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 422 LWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERELQR 481
L+T + +E + E + + ++ P+ I++ + + ALL +E R
Sbjct: 1273 LYTPPETPMEPDEQVTVEEQKETSEGKTSPSP-------IRIEEEVKETGEALLPQEENR 1325
Query: 482 RKEQLRV--PAVPPGVRIKEEPVSEEGEEDEEQEAEEE 517
R+E P PG + +++ + E EE+EE+E EEE
Sbjct: 1326 REETCAPVSPNTSPGEKPEDDLIKPEEEEEEEEEEEEE 1363
Score = 34.7 bits (78), Expect = 0.31
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 22/171 (12%)
Query: 364 RWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDVVQR----- 418
R + K ++ T +C D+ L+H+ ++ G F++ + I H + ++
Sbjct: 920 RHISIKAISRATGMCPHDIATTLQHLHMIDKRDG-RFVIIRREKLILSHMEKLKTCSRAN 978
Query: 419 ----QHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHAL 474
+ WT I V +E + + +Q I + ++Q+ A
Sbjct: 979 ELDPDSLRWTPILISNAAVSEEEREAEKEAERLMEQASCWEKEEQEILSTRANSRQSPA- 1037
Query: 475 LERELQRRKEQLRVPAVPP--GVR------IKEEPVSEEGEEDEEQEAEEE 517
++Q + + L P P G R KE EE EEDEE+E EEE
Sbjct: 1038 ---KVQSKNKYLHSPESRPVTGERGQLLELSKESSEEEEEEEDEEEEEEEE 1085
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 35.4 bits (80), Expect = 0.18
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 443 KKPDAQSGPAGLVCGDQRIQVAKT----KAQQNHALLERELQRRKEQLRVPAVPPGVRIK 498
++ D Q G + R ++A+T KAQ + LL+ Q+ P++ K
Sbjct: 178 EEQDDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKK 237
Query: 499 EE--PVSEEGEEDEEQEAEEEPMD 520
EE P EE +E E+ ++EE+PMD
Sbjct: 238 EEETPKQEEQKESEKMKSEEQPMD 261
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 35.4 bits (80), Expect = 0.18
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 427 QAKLEKVYNLVKETMPKKPDAQSGPAGLVC-GDQRIQVAKTKAQQNHALLERELQRRKEQ 485
+A+L+ + +T D+ GP+G+ G A+T + + E E + +E+
Sbjct: 395 RARLQGTSSHSADTPEASLDSGEGPSGMASQGCPSASRAETDDEDDEESDEEEEEEEEEE 454
Query: 486 LRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEE-----------PMDTSPSGLHSKLANGL 534
E+ +EG+ED+E+E EEE PM + L G
Sbjct: 455 EEEATDSEEEEDLEQ--MQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGK 512
Query: 535 PLGRAAGTDSFNGH--PPQGCASTPVARELKAFVEATFQRQFVLTLSE---LKRLFNLHL 589
+ R++G G P + P+A E+ ++ LTL E + +LF L +
Sbjct: 513 QISRSSGEQQNKGRIVSPSLLSEEPLAPS-SIDAESNGEQPEELTLEEESPVSQLFELEI 571
Query: 590 ASLP 593
+LP
Sbjct: 572 EALP 575
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 35.4 bits (80), Expect = 0.18
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 427 QAKLEKVYNLVKETMPKKPDAQSGPAGLVC-GDQRIQVAKTKAQQNHALLERELQRRKEQ 485
+A+L+ + +T D+ GP+G+ G A+T + + E E + +E+
Sbjct: 395 RARLQGTSSHSADTPEASLDSGEGPSGMASQGCPSASRAETDDEDDEESDEEEEEEEEEE 454
Query: 486 LRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEE-----------PMDTSPSGLHSKLANGL 534
E+ +EG+ED+E+E EEE PM + L G
Sbjct: 455 EEEATDSEEEEDLEQ--MQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGK 512
Query: 535 PLGRAAGTDSFNGH--PPQGCASTPVARELKAFVEATFQRQFVLTLSE---LKRLFNLHL 589
+ R++G G P + P+A E+ ++ LTL E + +LF L +
Sbjct: 513 QISRSSGEQQNKGRIVSPSLLSEEPLAPS-SIDAESNGEQPEELTLEEESPVSQLFELEI 571
Query: 590 ASLP 593
+LP
Sbjct: 572 EALP 575
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 35.4 bits (80), Expect = 0.18
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 427 QAKLEKVYNLVKETMPKKPDAQSGPAGLVC-GDQRIQVAKTKAQQNHALLERELQRRKEQ 485
+A+L+ + +T D+ GP+G+ G A+T + + E E + +E+
Sbjct: 407 RARLQGTSSHSADTPEASLDSGEGPSGMASQGCPSASRAETDDEDDEESDEEEEEEEEEE 466
Query: 486 LRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEE-----------PMDTSPSGLHSKLANGL 534
E+ +EG+ED+E+E EEE PM + L G
Sbjct: 467 EEEATDSEEEEDLEQ--MQEGQEDDEEEDEEEEAAAGKDGDKSPMSSLQISNEKNLEPGK 524
Query: 535 PLGRAAGTDSFNGH--PPQGCASTPVARELKAFVEATFQRQFVLTLSE---LKRLFNLHL 589
+ R++G G P + P+A E+ ++ LTL E + +LF L +
Sbjct: 525 QISRSSGEQQNKGRIVSPSLLSEEPLAPS-SIDAESNGEQPEELTLEEESPVSQLFELEI 583
Query: 590 ASLP 593
+LP
Sbjct: 584 EALP 587
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 35.0 bits (79), Expect = 0.24
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 470 QNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEED--EEQEAEEEPMD 520
+ H + ELQR +++ P +IK+EP SEE EE+ E++E EEPM+
Sbjct: 553 EGHPDPDAELQRMEQEAERRRQP---QIKQEPESEEEEEEKQEKEEKREEPME 602
>gi|13376339 plasticity-related protein 2 [Homo sapiens]
Length = 746
Score = 35.0 bits (79), Expect = 0.24
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 486 LRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSGLHSKLANGLPLGRAAGTDSF 545
LR PA P + EE EE EE+EE+E EEE +P L+ + LG
Sbjct: 460 LRAPAEP----MAEEEEEEEDEEEEEEEEEEEDEGPAPPSLYPTVQARPGLGPRVILPPR 515
Query: 546 NGHPP 550
G PP
Sbjct: 516 AGPPP 520
Score = 34.3 bits (77), Expect = 0.41
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 476 ERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPSG 525
++ L+ R L A P +R EP++EE EE+E++E EEE + G
Sbjct: 441 QKSLEGRGLGLPDDASPGHLRAPAEPMAEEEEEEEDEEEEEEEEEEEDEG 490
>gi|22758136 MAP7 domain containing 2 [Homo sapiens]
Length = 732
Score = 34.7 bits (78), Expect = 0.31
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 403 PYDGEFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQ 462
P E ++KH V +H A K N P +G A + ++R Q
Sbjct: 354 PQGEEALEKH---VVDKHASEKHAAAAGGKAENSAALGKPTAGTTDAGEAAKILAEKRRQ 410
Query: 463 VAKTKAQQNHALLERELQRR--KEQLRVPAVPPGVRIKEEPVSEEGE------EDEEQEA 514
K Q+ +E+E Q R +E+L+ A +R++EE +E E E ++QE
Sbjct: 411 ARLQKEQEEQERVEKEEQDRLEREELKRKAEEERLRLEEEARKQEEERKRQEEEKKKQEG 470
Query: 515 EEE 517
EE+
Sbjct: 471 EEK 473
>gi|8923771 ELG protein isoform b [Homo sapiens]
Length = 340
Score = 34.3 bits (77), Expect = 0.41
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 495 VRIKEEPVSEEGEEDEEQEAEEE 517
V + EEP+ EE EE+EE+E EEE
Sbjct: 56 VNVPEEPIEEEEEEEEEEEEEEE 78
>gi|166295179 ELG protein isoform a [Homo sapiens]
Length = 620
Score = 34.3 bits (77), Expect = 0.41
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 495 VRIKEEPVSEEGEEDEEQEAEEE 517
V + EEP+ EE EE+EE+E EEE
Sbjct: 336 VNVPEEPIEEEEEEEEEEEEEEE 358
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.53
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 489 PAVPPGVRIKEEPVSEEGEEDEEQEAEEE 517
P P G + K EP EE EE+EE E EEE
Sbjct: 175 PGRPTGSKKKNEPEDEEEEEEEEDEDEEE 203
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.53
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 489 PAVPPGVRIKEEPVSEEGEEDEEQEAEEE 517
P P G + K EP EE EE+EE E EEE
Sbjct: 175 PGRPTGSKKKNEPEDEEEEEEEEDEDEEE 203
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 33.9 bits (76), Expect = 0.53
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 489 PAVPPGVRIKEEPVSEEGEEDEEQEAEEE 517
P P G + K EP EE EE+EE E EEE
Sbjct: 175 PGRPTGSKKKNEPEDEEEEEEEEDEDEEE 203
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 33.5 bits (75), Expect = 0.70
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 197 QKKHAEEPWVHLHYYGL-RDSRSEHERQYLLCPGSSGVENTELVKSPSEYLM-MLMPPSQ 254
+K+H P V+ G R + E Q +LC G SG TE K +YL + P
Sbjct: 165 KKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKG 224
Query: 255 EEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVM 292
+E P + S V R L A+ I N K +
Sbjct: 225 RKEPGVPASVSTVSYGELERQLLQANPILEAFGNAKTV 262
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 33.5 bits (75), Expect = 0.70
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 197 QKKHAEEPWVHLHYYGL-RDSRSEHERQYLLCPGSSGVENTELVKSPSEYLM-MLMPPSQ 254
+K+H P V+ G R + E Q +LC G SG TE K +YL + P
Sbjct: 165 KKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKG 224
Query: 255 EEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVM 292
+E P + S V R L A+ I N K +
Sbjct: 225 RKEPGVPASVSTVSYGELERQLLQANPILEAFGNAKTV 262
>gi|153085395 histone deacetylase 4 [Homo sapiens]
Length = 1084
Score = 33.5 bits (75), Expect = 0.70
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 407 EFIKKHPDVVQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKT 466
+F++KH Q+Q Q ++ K+ +PK + P + + +
Sbjct: 488 QFLEKHKQQFQQQ-------QLQMNKI-------IPKPSEPARQP------ESHPEETEE 527
Query: 467 KAQQNHALLERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEEPMDTSPS 524
+ +++ ALL+ R + GV++K+EP+ E EE+ E E EP PS
Sbjct: 528 ELREHQALLDEPYLDRLPGQKEAHAQAGVQVKQEPI-ESDEEEAEPPREVEPGQRQPS 584
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,345,594
Number of Sequences: 37866
Number of extensions: 1347517
Number of successful extensions: 10841
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 9349
Number of HSP's gapped (non-prelim): 950
length of query: 708
length of database: 18,247,518
effective HSP length: 109
effective length of query: 599
effective length of database: 14,120,124
effective search space: 8457954276
effective search space used: 8457954276
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.