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Search of human proteins with 89051034
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
3-like [Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ... 420 e-118
gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like ... 418 e-117
gi|211059437 hypothetical protein LOC284428 [Homo sapiens] 412 e-116
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa... 409 e-115
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro... 406 e-114
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro... 379 e-105
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi... 112 3e-25
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 79 2e-15
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens] 79 2e-15
gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens] 36 0.020
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 33 0.13
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 33 0.22
gi|239742272 PREDICTED: hypothetical protein XP_002342469 isofor... 32 0.29
gi|239742270 PREDICTED: hypothetical protein XP_002342468 isofor... 32 0.29
gi|26986534 Rho GTPase activating protein 12 [Homo sapiens] 32 0.29
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 32 0.29
gi|148613882 homeobox A4 [Homo sapiens] 32 0.38
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens] 32 0.50
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1... 32 0.50
>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
3-like [Homo sapiens]
Length = 208
Score = 420 bits (1080), Expect = e-118
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLTCR 208
RVKKARERLAKALQADRLARQAEMLTCR
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLTCR 208
>gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
4-like [Homo sapiens]
Length = 208
Score = 418 bits (1074), Expect = e-117
Identities = 207/208 (99%), Positives = 207/208 (99%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLTCR 208
RVKKARERLAKALQADRLARQAEMLTCR
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLTCR 208
>gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
Length = 208
Score = 412 bits (1060), Expect = e-116
Identities = 205/206 (99%), Positives = 205/206 (99%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVR PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLT 206
RVKKARERLAKALQADRLARQAEMLT
Sbjct: 181 RVKKARERLAKALQADRLARQAEMLT 206
>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
sapiens]
Length = 208
Score = 409 bits (1052), Expect = e-115
Identities = 204/206 (99%), Positives = 205/206 (99%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEMLT 206
RVKKARERLAKALQADRLAR+AEMLT
Sbjct: 181 RVKKARERLAKALQADRLARRAEMLT 206
>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2 [Homo sapiens]
Length = 204
Score = 406 bits (1043), Expect = e-114
Identities = 202/204 (99%), Positives = 203/204 (99%)
Query: 1 MGEPAFTSFPSPPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
MGEPAFTSFPS PVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP
Sbjct: 1 MGEPAFTSFPSLPVLGKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRP 60
Query: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP
Sbjct: 61 VTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR
Sbjct: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
Query: 181 RVKKARERLAKALQADRLARQAEM 204
RVKKARERLAKALQADRLAR+AEM
Sbjct: 181 RVKKARERLAKALQADRLARRAEM 204
>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2, partial [Homo sapiens]
Length = 193
Score = 379 bits (972), Expect = e-105
Identities = 188/191 (98%), Positives = 190/191 (99%)
Query: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
Query: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
Query: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
Query: 196 DRLARQAEMLT 206
DRLAR+AEMLT
Sbjct: 181 DRLARRAEMLT 191
>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
sapiens]
Length = 194
Score = 112 bits (279), Expect = 3e-25
Identities = 77/179 (43%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 28 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 87
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Query: 88 CAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESL--DRAGAERVRSPLEPTPGR 145
C RRLQ LQ SS GE SS L L + L L P G SL D A P+
Sbjct: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
Query: 146 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARQAE 203
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA +AE
Sbjct: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 79.3 bits (194), Expect = 2e-15
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 22 MMPWALQK-KREIHMAKAHRRRAA---RSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKG 77
MMP LQK K+ + ++ + + LP+R T+ IF++PVT++ +HP N+V +
Sbjct: 213 MMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV-KSDP 271
Query: 78 DEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRS 137
E+P+QL +RLQ L + + L L + PG+ E+L A A + +
Sbjct: 272 QRMNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHT 331
Query: 138 PLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQAD 196
P G+ A A P + PL +VT DIR+Q RV++ R++L +AL AD
Sbjct: 332 SSAPITGQVSA-AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMAD 390
Query: 197 RLARQAE 203
L+R A+
Sbjct: 391 ILSRAAD 397
>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
Length = 291
Score = 79.3 bits (194), Expect = 2e-15
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 3/190 (1%)
Query: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
GK+ + M + Q+ R + + +ALP+R T+ IF++PVT+I +HP N+V +
Sbjct: 67 GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
Query: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
+ +++P+QL ++L L E + L L + PG E+L A A +
Sbjct: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
Query: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 194
+ P G+ A A PG+ PL +VT DIR+Q V++ R+RL +AL
Sbjct: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
Query: 195 ADRLARQAEM 204
AD LA E+
Sbjct: 245 ADMLAHVEEL 254
>gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]
Length = 315
Score = 36.2 bits (82), Expect = 0.020
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 68 PDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE-S 126
P VR RKGD+ ++ R+ P P HL S LA G G S
Sbjct: 226 PSTGVRDRKGDKPWKESGGSVEAPRMGFTHP---------PGHLSGCQSSLASGETGTGS 276
Query: 127 LDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGC 159
D G R R+P++ TPGR PA P C
Sbjct: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 33.5 bits (75), Expect = 0.13
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 120 PGTAGESLDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGCQLPPP--LSGQLVTP- 172
PGT G S A + P EP + PA G PT G+ C P L+G +P
Sbjct: 32 PGTRGHSQQEAAMPHIPEDEEPPGEPQAAQSPAGQGPPTAGVSCSPTPTIVLTGDATSPE 91
Query: 173 -ADIRRQARRVKKARERLA 190
+ A RV +RL+
Sbjct: 92 GETDKNLANRVHSPHKRLS 110
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 32.7 bits (73), Expect = 0.22
Identities = 43/142 (30%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 63 RIRSHPDNQVR-RRKGDEHLEKP-QQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAP 120
R+ + P +R +R GD L +L YR QP SS +S S S AP
Sbjct: 9 RVNAVPGTMLRPQRPGDLQLGASLYELVGYR-----QPPSSSSSSTSSTSSTSSSSTTAP 63
Query: 121 GTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQAR 180
L +A E+ +P EP GP PG G P S + + ++Q R
Sbjct: 64 -----LLPKAAREKPEAPAEPP---------GPGPGSGAH--PGGSARPDAKEEQQQQLR 107
Query: 181 RVKKARERLAKALQADRLARQA 202
R +RER K +Q LA A
Sbjct: 108 RKINSRER--KRMQDLNLAMDA 127
>gi|239742272 PREDICTED: hypothetical protein XP_002342469 isoform 2
[Homo sapiens]
Length = 464
Score = 32.3 bits (72), Expect = 0.29
Identities = 53/206 (25%), Positives = 72/206 (34%), Gaps = 44/206 (21%)
Query: 12 PPVLGKL--KRNMMPWALQKKRE---IHMAKAHRRRAARSALPMR--LTSCIFRRPVTRI 64
PP LGK K N+ PW Q + ++ K + R P R L +P
Sbjct: 70 PPTLGKKEGKENLKPWKPQVEANPGPLNKDKGEKEERPRQQDPQRKALLHIFSGKP---- 125
Query: 65 RSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLES----VLSILAP 120
P+ + RKG + Y R+ + G P+H S V +LA
Sbjct: 126 ---PEKPLPNRKGST------ESSVYLRVAS---------GPMPVHTTSKRPRVDPVLAD 167
Query: 121 GTAGESLDRAGAERVRSPLE-----------PTPGRFPAVAGGPTPGMGCQLPPPLSGQL 169
+A E DR A SPL P + A A P P + Q P PL
Sbjct: 168 RSATEMSDRGSALASLSPLRKASLSSSSSLGPKERQTGAAADIPQPAVRHQGPEPLLVVK 227
Query: 170 VTPADIRRQARRVKKARERLAKALQA 195
T + R V +A + LQA
Sbjct: 228 PTHSSPEGGCREVPQAASKTHGLLQA 253
>gi|239742270 PREDICTED: hypothetical protein XP_002342468 isoform 1
[Homo sapiens]
Length = 464
Score = 32.3 bits (72), Expect = 0.29
Identities = 53/206 (25%), Positives = 72/206 (34%), Gaps = 44/206 (21%)
Query: 12 PPVLGKL--KRNMMPWALQKKRE---IHMAKAHRRRAARSALPMR--LTSCIFRRPVTRI 64
PP LGK K N+ PW Q + ++ K + R P R L +P
Sbjct: 70 PPTLGKKEGKENLKPWKPQVEANPGPLNKDKGEKEERPRQQDPQRKALLHIFSGKP---- 125
Query: 65 RSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLES----VLSILAP 120
P+ + RKG + Y R+ + G P+H S V +LA
Sbjct: 126 ---PEKPLPNRKGST------ESSVYLRVAS---------GPMPVHTTSKRPRVDPVLAD 167
Query: 121 GTAGESLDRAGAERVRSPLE-----------PTPGRFPAVAGGPTPGMGCQLPPPLSGQL 169
+A E DR A SPL P + A A P P + Q P PL
Sbjct: 168 RSATEMSDRGSALASLSPLRKASLSSSSSLGPKERQTGAAADIPQPAVRHQGPEPLLVVK 227
Query: 170 VTPADIRRQARRVKKARERLAKALQA 195
T + R V +A + LQA
Sbjct: 228 PTHSSPEGGCREVPQAASKTHGLLQA 253
>gi|26986534 Rho GTPase activating protein 12 [Homo sapiens]
Length = 846
Score = 32.3 bits (72), Expect = 0.29
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 97 QPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGR--FPAVAGGPT 154
Q C S GEGS +H +S +G+ L + E++R+ P GR P A
Sbjct: 197 QSCDSAGEGSERIHQDS--------ESGDELSSSSTEQIRATTPPNQGRPDSPVYANLQE 248
Query: 155 PGMGCQLPPPLSG 167
+ PPL G
Sbjct: 249 LKISQSALPPLPG 261
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 32.3 bits (72), Expect = 0.29
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 66 SHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGE 125
SH D D HL P L + Q P G++ L SV AP A +
Sbjct: 424 SHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASK 483
Query: 126 SLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQ 168
A V SP+ +P + GP C LPP G+
Sbjct: 484 ------APVVPSPVLQSPSEGLGMGAGP----ACPLPPLAGGE 516
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 32.0 bits (71), Expect = 0.38
Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 129 RAGAERVRSPLEPTPGRFPAVAGGPTPGMGC------QLPPPLSGQLVTPADIRR 177
R GA R P P PA A GP G+ QLPPPL + V PA RR
Sbjct: 105 RGGASPGRPPQPEQP---PAQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRR 156
>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 446
Score = 31.6 bits (70), Expect = 0.50
Identities = 23/55 (41%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 98 PCSSQGEGSSPLHLESVLSILAPGTAG-ESLDRAGAE---RVRSPLEPTPGRFPA 148
PCS G SS H+E S P AG E L RAG P E RFPA
Sbjct: 12 PCSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGVAVGGARGDPAEAADERFPA 66
>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 5 [Homo sapiens]
Length = 2166
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1709 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1764
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1765 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1821
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1822 HGPPLSPAIRVQEV 1835
>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 4 [Homo sapiens]
Length = 2173
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 3 [Homo sapiens]
Length = 2179
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1722 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1777
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1778 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1834
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1835 HGPPLSPAIRVQEV 1848
>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 2 [Homo sapiens]
Length = 2186
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1841
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1842 HGPPLSPAIRVQEV 1855
>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 1 [Homo sapiens]
Length = 2221
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1841
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1842 HGPPLSPAIRVQEV 1855
>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 18 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 20 [Homo sapiens]
Length = 2127
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1670 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1725
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1726 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1782
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1783 HGPPLSPAIRVQEV 1796
>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 19 [Homo sapiens]
Length = 2135
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1678 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1733
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1734 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1790
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1791 HGPPLSPAIRVQEV 1804
>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 17 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 16 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 15 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 14 [Homo sapiens]
Length = 2138
Score = 31.6 bits (70), Expect = 0.50
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 42 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSS 101
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 102 QGEGSSPLHLESVLSILAPGTAGESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 156
QG+ SP H + V S P + + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 157 MGCQLPPPLSGQLV 170
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,538,751
Number of Sequences: 37866
Number of extensions: 516313
Number of successful extensions: 2505
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 2391
Number of HSP's gapped (non-prelim): 256
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.