Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC645307 Sequence: fasta or formatted (187aa) NCBI GI: 89040494
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         19           2
 C cysteine            2.1          4           1
 D aspartate           1.6          3           1
 E glutamate           5.9         11           1
 F phenylalanine       3.7          7           2
 G glycine            13.4         25           2
 H histidine           1.1          2           1
 I isoleucine          0.5          1           1
 K lysine              3.7          7           1
 L leucine             7.5         14           2
 M methionine          1.1          2           1
 N asparagine          0.0          0           0
 P proline            13.4         25           3
 Q glutamine           4.3          8           2
 R arginine           12.3         23           2
 S serine              8.6         16           2
 T threonine           2.7          5           1
 V valine              4.8          9           1
 W tryptophan          2.7          5           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131646          0.038   PREDICTED: hypothetical protein 
LOC100287920          0.038   PREDICTED: hypothetical protein XP_002344198 
LOC729196             0.032   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
LOC729196             0.032   PREDICTED: similar to unc-93 homolog B1 (C. elegans...
LOC728503             0.030   PREDICTED: hypothetical protein 
LOC728503             0.030   PREDICTED: hypothetical protein 
LOC100290265          0.030   PREDICTED: hypothetical protein XP_002346787 
LOC728503             0.030   PREDICTED: hypothetical protein 
DACT3                 0.030   thymus expressed gene 3-like 
LOC652119             0.027   PREDICTED: similar to putative DUX4 protein 
LOC652119             0.027   PREDICTED: similar to putative DUX4 protein 
ZNF716                0.027   PREDICTED: zinc finger protein 716 
LOC100289444          0.027   PREDICTED: hypothetical protein 
LOC100289444          0.027   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.027   PREDICTED: hypothetical protein 
LOC100292184          0.024   PREDICTED: hypothetical protein 
LOC100293662          0.024   PREDICTED: hypothetical protein 
ZNF469                0.024   zinc finger protein 469 
C7orf51               0.024   hypothetical protein FLJ37538 
HPX-2                 0.024   PREDICTED: similar to double homeobox, 4 
LOC100132062          0.024   PREDICTED: hypothetical protein 
DDN                   0.024   dendrin 
SH3BP1                0.024   SH3-domain binding protein 1 
LOC100132062          0.022   PREDICTED: hypothetical protein 
LOC100132287          0.022   PREDICTED: hypothetical protein 
NAGPA                 0.022   N-acetylglucosamine-1-phosphodiester alpha-N-acetylg...
KIAA1486              0.022   hypothetical protein LOC57624 
LOC100292454          0.022   PREDICTED: similar to hCG2019076 
LOC100293817          0.022   PREDICTED: similar to hCG1811893 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press