Guide to the Human Genome
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Name: VTN Sequence: fasta or formatted (478aa) NCBI GI: 88853069
Description:

vitronectin precursor

Referenced in:

Complement
Growth Hormone and Related Hormones

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         34           2
 C cysteine            2.9         14           2
 D aspartate           6.7         32           2
 E glutamate           7.1         34           3
 F phenylalanine       4.8         23           3
 G glycine             7.7         37           2
 H histidine           1.9          9           1
 I isoleucine          2.9         14           1
 K lysine              4.2         20           2
 L leucine             6.7         32           2
 M methionine          1.5          7           2
 N asparagine          3.1         15           2
 P proline             7.7         37           2
 Q glutamine           5.4         26           1
 R arginine            7.5         36           2
 S serine              7.1         34           2
 T threonine           4.0         19           1
 V valine              4.6         22           1
 W tryptophan          2.1         10           1
 Y tyrosine            4.8         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vitronectin precursor 
PRG4                  0.100   proteoglycan 4 isoform D 
PRG4                  0.100   proteoglycan 4 isoform C 
PRG4                  0.100   proteoglycan 4 isoform B 
PRG4                  0.100   proteoglycan 4 isoform A 
MMP14                 0.056   matrix metalloproteinase 14 preproprotein 
MMP16                 0.055   matrix metalloproteinase 16 isoform 1 preproprotein ...
MMP24                 0.055   matrix metalloproteinase 24 preproprotein 
MMP15                 0.053   matrix metalloproteinase 15 preproprotein 
MMP13                 0.044   matrix metalloproteinase 13 preproprotein 
MMP11                 0.042   matrix metalloproteinase 11 preproprotein 
MMP17                 0.041   matrix metalloproteinase 17 preproprotein 
MMP19                 0.038   matrix metalloproteinase 19 isoform rasi-1 preproprot...
HPX                   0.037   hemopexin precursor 
MMP8                  0.035   matrix metalloproteinase 8 preproprotein 
MMP2                  0.035   matrix metalloproteinase 2 isoform b 
MMP2                  0.035   matrix metalloproteinase 2 isoform a preproprotein [...
MMP25                 0.034   matrix metalloproteinase 25 preproprotein 
MMP12                 0.033   matrix metalloproteinase 12 preproprotein 
MMP3                  0.032   matrix metalloproteinase 3 preproprotein 
MMP10                 0.030   matrix metalloproteinase 10 preproprotein 
MMP21                 0.024   matrix metalloproteinase 21 preproprotein 
MMP28                 0.023   matrix metalloproteinase 28 isoform 1 preproprotein ...
MMP27                 0.023   matrix metalloproteinase 27 
MMP9                  0.022   matrix metalloproteinase 9 preproprotein 
MMP20                 0.022   matrix metalloproteinase 20 preproprotein 
P11                   0.020   placental protein 11 precursor 
ENPP2                 0.017   autotaxin isoform 3 preproprotein 
ENPP2                 0.017   autotaxin isoform 2 preproprotein 
ENPP2                 0.017   autotaxin isoform 1 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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