Guide to the Human Genome
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Name: ATP6V0A4 Sequence: fasta or formatted (840aa) NCBI GI: 85386547
Description:

ATPase, H+ transporting, lysosomal V0 subunit a4

Referenced in:

Kidney
Lysosomes and Related Organelles

Other entries for this name:
alt mRNA [840aa] ATPase, H+ transporting, lysosomal V0 subunit a4
alt mRNA [840aa] ATPase, H+ transporting, lysosomal V0 subunit a4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         50           3
 C cysteine            1.9         16           2
 D aspartate           3.3         28           2
 E glutamate           7.0         59           2
 F phenylalanine       7.3         61           2
 G glycine             5.2         44           2
 H histidine           2.4         20           1
 I isoleucine          7.5         63           2
 K lysine              4.0         34           2
 L leucine            11.2         94           2
 M methionine          3.7         31           1
 N asparagine          4.8         40           1
 P proline             3.5         29           2
 Q glutamine           5.0         42           2
 R arginine            4.4         37           2
 S serine              6.5         55           3
 T threonine           5.0         42           2
 V valine              6.5         55           2
 W tryptophan          1.8         15           1
 Y tyrosine            3.0         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase, H+ transporting, lysosomal V0 subunit a4 [Ho... 
ATP6V0A4              1.000   ATPase, H+ transporting, lysosomal V0 subunit a4 [Ho...
ATP6V0A4              1.000   ATPase, H+ transporting, lysosomal V0 subunit a4 [Ho...
ATP6V0A1              0.616   ATPase, H+ transporting, lysosomal V0 subunit a1 iso...
ATP6V0A1              0.616   ATPase, H+ transporting, lysosomal V0 subunit a1 is...
ATP6V0A1              0.616   ATPase, H+ transporting, lysosomal V0 subunit a1 is...
ATP6V0A2              0.496   ATPase, H+ transporting, lysosomal V0 subunit A2 [Ho...
TCIRG1                0.435   T-cell, immune regulator 1 isoform a 
TCIRG1                0.349   T-cell, immune regulator 1 isoform b 
ANGPTL3               0.008   angiopoietin-like 3 precursor 
CEP110                0.008   centrosomal protein 110kDa 
LOC653073             0.007   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.007   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.007   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653720             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.006   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.006   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.005   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.005   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.005   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.005   PREDICTED: similar to Golgin subfamily A member 8-l...
EPC2                  0.005   enhancer of polycomb homolog 2 
TPR                   0.005   nuclear pore complex-associated protein TPR 
CCDC158               0.005   coiled-coil domain containing 158 
CGN                   0.005   cingulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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