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Search of human proteins with 84875535
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|84875535 zona pellucida binding protein 2 isoform 1 [Homo
sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|84875535 zona pellucida binding protein 2 isoform 1 [Homo sap... 664 0.0
gi|40556389 zona pellucida binding protein 2 isoform 2 [Homo sap... 651 0.0
gi|229577315 zona pellucida binding protein isoform 2 [Homo sapi... 202 3e-52
gi|229577313 zona pellucida binding protein isoform 1 [Homo sapi... 199 2e-51
gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 36 0.051
gi|109150416 peroxidasin [Homo sapiens] 35 0.11
gi|126517478 peroxidasin homolog-like [Homo sapiens] 33 0.25
gi|157426829 leucine rich repeat and Ig domain containing 3 [Hom... 32 0.74
gi|40217805 nucleolar protein 9 [Homo sapiens] 32 0.74
gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase ... 31 1.3
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 31 1.3
gi|237858679 neurofascin isoform 3 precursor [Homo sapiens] 31 1.6
gi|237858677 neurofascin isoform 2 precursor [Homo sapiens] 31 1.6
gi|89903008 neurofascin isoform 4 precursor [Homo sapiens] 31 1.6
gi|237858682 neurofascin isoform 6 precursor [Homo sapiens] 31 1.6
gi|237858680 neurofascin isoform 5 precursor [Homo sapiens] 31 1.6
gi|237858675 neurofascin isoform 1 precursor [Homo sapiens] 31 1.6
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 31 1.6
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 31 1.6
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 31 1.6
gi|22749183 leucine rich repeat and Ig domain containing 2 [Homo... 29 4.8
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 29 6.2
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 29 6.2
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 29 6.2
gi|143770880 laminin, beta 4 [Homo sapiens] 29 6.2
gi|169167609 PREDICTED: hypothetical protein [Homo sapiens] 28 8.2
gi|55741571 leucine rich repeat and fibronectin type III domain ... 28 8.2
gi|28373126 contactin 4 isoform c precursor [Homo sapiens] 28 8.2
gi|28373122 contactin 4 isoform a precursor [Homo sapiens] 28 8.2
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 28 8.2
>gi|84875535 zona pellucida binding protein 2 isoform 1 [Homo
sapiens]
Length = 316
Score = 664 bits (1713), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MMRTCVLLSAVLWCLTGDKIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTG 60
MMRTCVLLSAVLWCLTGDKIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTG
Sbjct: 1 MMRTCVLLSAVLWCLTGDKIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTG 60
Query: 61 NNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFAYREPDY 120
NNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFAYREPDY
Sbjct: 61 NNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFAYREPDY 120
Query: 121 SYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPEHGLIHE 180
SYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPEHGLIHE
Sbjct: 121 SYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPEHGLIHE 180
Query: 181 LFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDRIEDFFRSQAYIFYHNFNKTLPA 240
LFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDRIEDFFRSQAYIFYHNFNKTLPA
Sbjct: 181 LFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDRIEDFFRSQAYIFYHNFNKTLPA 240
Query: 241 MHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFSPDVNVTCQTCVSVLTYG 300
MHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFSPDVNVTCQTCVSVLTYG
Sbjct: 241 MHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFSPDVNVTCQTCVSVLTYG 300
Query: 301 AKSCPQTSNKNQQYED 316
AKSCPQTSNKNQQYED
Sbjct: 301 AKSCPQTSNKNQQYED 316
>gi|40556389 zona pellucida binding protein 2 isoform 2 [Homo
sapiens]
Length = 338
Score = 651 bits (1680), Expect = 0.0
Identities = 316/338 (93%), Positives = 316/338 (93%), Gaps = 22/338 (6%)
Query: 1 MMRTCVLLSAVLWCLTG----------------------DKIYVELHQNSPVLICMDFKL 38
MMRTCVLLSAVLWCLTG DKIYVELHQNSPVLICMDFKL
Sbjct: 1 MMRTCVLLSAVLWCLTGVQCPRFTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKL 60
Query: 39 SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET 98
SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET
Sbjct: 61 SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET 120
Query: 99 QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC 158
QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC
Sbjct: 121 QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC 180
Query: 159 HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR 218
HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR
Sbjct: 181 HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR 240
Query: 219 IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS 278
IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS
Sbjct: 241 IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS 300
Query: 279 PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED 316
PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED
Sbjct: 301 PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED 338
>gi|229577315 zona pellucida binding protein isoform 2 [Homo
sapiens]
Length = 350
Score = 202 bits (514), Expect = 3e-52
Identities = 109/296 (36%), Positives = 163/296 (55%), Gaps = 27/296 (9%)
Query: 19 KIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFL 78
K YV LHQ SP ++C+ +L E++DP++ W GP K ++ N IT TG L+ ++F
Sbjct: 71 KAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSENRTAQITSTGSLVFQNFE 130
Query: 79 EPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYN 138
E +SG+YTC L YK T EE + + + ++AYREP Y YQ R+ C YN
Sbjct: 131 ESMSGIYTCFLEYK----PTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAPCNSIYN 186
Query: 139 DVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGAC 198
F + L +IL L+ DLSC + +CH V++ GL +ELF AF V+
Sbjct: 187 ISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVS---------- 236
Query: 199 NGSVDCED----TTNHN------ILQARDRIEDFFRSQAYIFYHNFNKTLPAMHFVDHSL 248
S+D E T+HN + +A++ IE FF Q I + LP +++++ +L
Sbjct: 237 --SLDTEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQ-LPQIYYIEGTL 293
Query: 249 QVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFSPDVNVTCQTCVSVLTYGAKSC 304
Q+V ++ C PG+G N + H C CCV+CSP +++P + C C S L YGAK+C
Sbjct: 294 QMVWINRCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTC 349
>gi|229577313 zona pellucida binding protein isoform 1 [Homo
sapiens]
Length = 351
Score = 199 bits (507), Expect = 2e-51
Identities = 110/297 (37%), Positives = 164/297 (55%), Gaps = 28/297 (9%)
Query: 19 KIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI-NITETGQLMVKDF 77
K YV LHQ SP ++C+ +L E++DP++ W GP K ++ NR IT TG L+ ++F
Sbjct: 71 KAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENRTAQITSTGSLVFQNF 130
Query: 78 LEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRY 137
E +SG+YTC L YK T EE + + + ++AYREP Y YQ R+ C Y
Sbjct: 131 EESMSGIYTCFLEYKP----TVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAPCNSIY 186
Query: 138 NDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGA 197
N F + L +IL L+ DLSC + +CH V++ GL +ELF AF V+
Sbjct: 187 NISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVS--------- 237
Query: 198 CNGSVDCED----TTNHN------ILQARDRIEDFFRSQAYIFYHNFNKTLPAMHFVDHS 247
S+D E T+HN + +A++ IE FF Q I + LP +++++ +
Sbjct: 238 ---SLDTEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQ-LPQIYYIEGT 293
Query: 248 LQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFSPDVNVTCQTCVSVLTYGAKSC 304
LQ+V ++ C PG+G N + H C CCV+CSP +++P + C C S L YGAK+C
Sbjct: 294 LQMVWINRCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTC 350
>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
Length = 1447
Score = 35.8 bits (81), Expect = 0.051
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 105
P++ W+ E + + ++ L++ + + SG+YTC ++YK E TV
Sbjct: 269 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGMYTCVVTYKNENISASAELTVL 328
Query: 106 KRYDFM-----VFAYREPDYSYQMAV 126
F+ ++AY D ++ V
Sbjct: 329 VPPWFLNHPSNLYAYESMDIEFECTV 354
>gi|109150416 peroxidasin [Homo sapiens]
Length = 1479
Score = 34.7 bits (78), Expect = 0.11
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46 PTYLWI-GPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQE 100
P +W+ NE ++ ++R+N+ + G LM+++ E G+Y C + +TQE
Sbjct: 275 PEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQETDQGIYQCMAKNVAGEVKTQE 330
Score = 29.3 bits (64), Expect = 4.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 26 QNSPVLI--CMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSG 83
QN+ VL+ + + S P W + L + R+NIT +G L +++ ++ SG
Sbjct: 349 QNTEVLVGESVTLECSATGHPPPRISWTRGDRTPLPVDPRVNITPSGGLYIQNVVQGDSG 408
Query: 84 LYTCT 88
Y C+
Sbjct: 409 EYACS 413
>gi|126517478 peroxidasin homolog-like [Homo sapiens]
Length = 1463
Score = 33.5 bits (75), Expect = 0.25
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 46 PTYLWIGPNEKT-LTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQ 99
P +WI N L + R+N+ + G LM+++ E G+Y C +A+TQ
Sbjct: 263 PEIIWIHNNHSLDLEDDTRLNVFDDGTLMIRNTRESDQGVYQCMARNSAGEAKTQ 317
>gi|157426829 leucine rich repeat and Ig domain containing 3 [Homo
sapiens]
Length = 592
Score = 32.0 bits (71), Expect = 0.74
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 12/85 (14%)
Query: 46 PTYLWIGPNEK--TLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYK----------T 93
PT W+ P + T T R + G L ++D SG YTC S T
Sbjct: 437 PTVAWVTPQHRPVTATSAGRARVLPGGTLEIQDARPQDSGTYTCVASNAGGNDTYFATLT 496
Query: 94 VKAETQEEKTVKKRYDFMVFAYREP 118
V+ E +T + ++ + A R P
Sbjct: 497 VRPEPAANRTPGEAHNETLAALRAP 521
>gi|40217805 nucleolar protein 9 [Homo sapiens]
Length = 702
Score = 32.0 bits (71), Expect = 0.74
Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 39/174 (22%)
Query: 73 MVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFA--YREPDYSYQMAVRFTT 130
+ +++ + GLYT K++T K +R+ FA D + V FT
Sbjct: 445 LTPQYVDDMDGLYT--------KSKT---KMRNRRFRLAAFADALEFADEEKESPVEFTG 493
Query: 131 RSCIGRYNDVFFRVL-------KKILDSL-----ISDLSCHVIEPSYKCHSV---EIP-- 173
IG Y D FR+ KIL L +S L + +P HS+ ++P
Sbjct: 494 HKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQLQPPMPKPLSPLHSLTPYQVPFN 553
Query: 174 ------EHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDRIED 221
H + I + VN W G C D TN IL A+ I D
Sbjct: 554 AVALRITHSDVAPTHILYAVN---ASWVGLCKIQDDVRGYTNGPILLAQTPICD 604
>gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase
[Homo sapiens]
Length = 828
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 225 SQAYIFYHNFNKTLPAMHFVD--HSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATF 282
S A IF HNF+ +P ++ H + R + +N +++ A+ C+V +
Sbjct: 733 SSAAIFVHNFSGPVPEPEYLQKLHKYLITRTE-------RNVAVYAESATYCLVKNAVKM 785
Query: 283 SPDVNV---TCQTCVSVLTYGAKSCPQTSNK 310
D+ V T Q VSVL + PQ + +
Sbjct: 786 FKDIGVFKETKQKRVSVLELSSTFLPQCNRQ 816
>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
precursor [Homo sapiens]
Length = 2012
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 53 PNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMV 112
P + + N RI + G L++K +E SG Y C +S V A+ + + + M+
Sbjct: 732 PQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVS-NDVGADVSKSMYLTVKIPAMI 790
Query: 113 FAY 115
+Y
Sbjct: 791 TSY 793
>gi|237858679 neurofascin isoform 3 precursor [Homo sapiens]
Length = 1174
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 105
PT W + + ++ E G L +K + G+YTC + KAE Q VK
Sbjct: 471 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 530
>gi|237858677 neurofascin isoform 2 precursor [Homo sapiens]
Length = 1189
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 105
PT W + + ++ E G L +K + G+YTC + KAE Q VK
Sbjct: 471 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 530
>gi|89903008 neurofascin isoform 4 precursor [Homo sapiens]
Length = 1169
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 105
PT W + + ++ E G L +K + G+YTC + KAE Q VK
Sbjct: 471 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 530
>gi|237858682 neurofascin isoform 6 precursor [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 105
PT W + + ++ E G L +K + G+YTC + KAE Q VK
Sbjct: 454 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 513
>gi|237858680 neurofascin isoform 5 precursor [Homo sapiens]
Length = 619
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 105
PT W + + ++ E G L +K + G+YTC + KAE Q VK
Sbjct: 460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519
>gi|237858675 neurofascin isoform 1 precursor [Homo sapiens]
Length = 1240
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 105
PT W + + ++ E G L +K + G+YTC + KAE Q VK
Sbjct: 460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 30.8 bits (68), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 26 QNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI--NITETGQLMV 74
Q+SP C D KL E+ D Y W+ PN+ R+ N T G+ V
Sbjct: 1478 QDSPARTCQDLKLCHPELPDGEY-WVDPNQGCARDAFRVFCNFTAGGETCV 1527
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 30.8 bits (68), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 26 QNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI--NITETGQLMV 74
Q+SP C D KL E+ D Y W+ PN+ R+ N T G+ V
Sbjct: 1457 QDSPARTCQDLKLCHPELPDGEY-WVDPNQGCARDAFRVFCNFTAGGETCV 1506
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.8 bits (68), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 26 QNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI--NITETGQLMV 74
Q+SP C D KL E+ D Y W+ PN+ R+ N T G+ V
Sbjct: 1564 QDSPARTCQDLKLCHPELPDGEY-WVDPNQGCARDAFRVFCNFTAGGETCV 1613
>gi|22749183 leucine rich repeat and Ig domain containing 2 [Homo
sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 4.8
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 46 PTYLWIGPNEKTLT--GNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKT 103
P W+ P + +T N R + G L ++ + SG+Y C S T
Sbjct: 440 PVISWVTPRRRFITTKSNGRATVLGDGTLEIRFAQDQDSGMYVCIASNAAGNDTFTASLT 499
Query: 104 VKK-RYDFMVFAYREPDY 120
VK D ++A R P Y
Sbjct: 500 VKGFASDRFLYANRTPMY 517
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 45 DPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTV 104
+P W + + I +G+L+VK+ +G YTCT +A + T+
Sbjct: 2875 EPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTI 2934
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 45 DPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTV 104
+P W + + I +G+L+VK+ +G YTCT +A + T+
Sbjct: 4066 EPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTI 4125
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 45 DPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTV 104
+P W + + I +G+L+VK+ +G YTCT +A + T+
Sbjct: 2784 EPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTI 2843
>gi|143770880 laminin, beta 4 [Homo sapiens]
Length = 1761
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 245 DHSLQVVRLDSCRPGFGKNER-LHSNCASCCVVCSPATFSPDVNVTCQTC 293
++++ V +SC G+ R LH+ + C +C P + +N TC+ C
Sbjct: 973 NNNIDVTDPESCSRVTGECLRCLHNTQGANCQLCKPGHYGSALNQTCRRC 1022
>gi|169167609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 28.5 bits (62), Expect = 8.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 258 PGFGKNERLHSNCASCCVVC 277
PG + R H +C+SCC C
Sbjct: 113 PGLSSSRRRHRHCSSCCCRC 132
>gi|55741571 leucine rich repeat and fibronectin type III domain
containing 2 [Homo sapiens]
Length = 789
Score = 28.5 bits (62), Expect = 8.2
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 38 LSKKEIVDPTYL--WIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVK 95
L K I DP+ L W+ P+++ + ++R + + G L + SG +TC + +
Sbjct: 308 LKCKAIGDPSPLIHWVAPDDRLVGNSSRTAVYDNGTLDIFITTSQDSGAFTCIAANAAGE 367
Query: 96 AETQEEKTV 104
A E ++
Sbjct: 368 ATAMVEVSI 376
>gi|28373126 contactin 4 isoform c precursor [Homo sapiens]
Length = 698
Score = 28.5 bits (62), Expect = 8.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTC 87
P Y W L N RI I+E G L + + + +G YTC
Sbjct: 109 PVYTW-KKGRDILKENERITISEDGNLRIINVTKSDAGSYTC 149
>gi|28373122 contactin 4 isoform a precursor [Homo sapiens]
Length = 1026
Score = 28.5 bits (62), Expect = 8.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 46 PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTC 87
P Y W L N RI I+E G L + + + +G YTC
Sbjct: 437 PVYTW-KKGRDILKENERITISEDGNLRIINVTKSDAGSYTC 477
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 28.5 bits (62), Expect = 8.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 256 CRPGFGKNERLHSNCASCCVVCSPATFSPDVN-----VTCQTCVSVLTYGA-KSCPQTSN 309
C PG+ E + C C P T+ +N + CQ C + A ++C +T N
Sbjct: 57 CSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTEN 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,461,869
Number of Sequences: 37866
Number of extensions: 551448
Number of successful extensions: 1282
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 42
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.