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Search of human proteins with 83582796
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|83582796 beta-defensin 113 [Homo sapiens]
(82 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|83582796 beta-defensin 113 [Homo sapiens] 182 5e-47
gi|83582794 beta-defensin 110 [Homo sapiens] 37 0.003
gi|82734214 beta-defensin 111 [Homo sapiens] 33 0.049
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 30 0.32
gi|66346695 fibrillin 2 precursor [Homo sapiens] 29 0.71
gi|21361171 brain and reproductive organ-expressed (TNFRSF1A mod... 28 1.2
gi|83582800 beta-defensin 116 [Homo sapiens] 28 1.2
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 28 1.6
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 28 2.1
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 28 2.1
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 28 2.1
gi|116517226 beta-defensin 135 [Homo sapiens] 27 2.7
gi|24430141 fibrillin 1 precursor [Homo sapiens] 27 3.5
gi|114796644 regulator of chromosome condensation 1 isoform a [H... 27 3.5
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 27 4.6
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 27 4.6
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 27 4.6
gi|82734217 beta-defensin 112 [Homo sapiens] 27 4.6
gi|18250304 beta defensin 129 precursor [Homo sapiens] 27 4.6
gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo... 26 6.0
gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo... 26 6.0
>gi|83582796 beta-defensin 113 [Homo sapiens]
Length = 82
Score = 182 bits (462), Expect = 5e-47
Identities = 82/82 (100%), Positives = 82/82 (100%)
Query: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYCNVNP 60
MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYCNVNP
Sbjct: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYCNVNP 60
Query: 61 CCAVWEYQKPIINKITSKLHQK 82
CCAVWEYQKPIINKITSKLHQK
Sbjct: 61 CCAVWEYQKPIINKITSKLHQK 82
>gi|83582794 beta-defensin 110 [Homo sapiens]
Length = 62
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYC 56
MKI F F V+ +P + E R C+ VRG CK C+ EY Y YC
Sbjct: 1 MKIQLFFFILHFWVTI---LPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYC 53
>gi|82734214 beta-defensin 111 [Homo sapiens]
Length = 67
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYCNVNP 60
MKI F F V+ P+ + + +REC++ G CK +C+ E YC + P
Sbjct: 1 MKIQLFFFILHFWVTILPAKKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYC-IRP 59
Query: 61 ---CC 62
CC
Sbjct: 60 GTHCC 64
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 33 RECQLVRGACKPECNSWEYVYYYC-NVNPCCAVWEYQ 68
+ C + G C+ C+ E VY YC N CC +YQ
Sbjct: 23 QRCWNLYGKCRYRCSKKERVYVYCINNKMCCVKPKYQ 59
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 29.3 bits (64), Expect = 0.71
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 5 CIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVY 53
C+ + + SC P R+ EC ++ G C +C + E Y
Sbjct: 1216 CVNMIGTYQCSCNPGYQATPDRQGCTDIDECMIMNGGCDTQCTNSEGSY 1264
>gi|21361171 brain and reproductive organ-expressed (TNFRSF1A
modulator) isoform 1 [Homo sapiens]
Length = 415
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 18 PSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYCNVNPCCAVWEYQK 69
P P+ E+A+R + CQ R AC P WE V + C + + Q+
Sbjct: 348 PYSPRWDGNEMAKRAKGCQGSRDACSP----WEQVLAFAVAKTGCKLLQPQR 395
>gi|83582800 beta-defensin 116 [Homo sapiens]
Length = 102
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 35 CQLVRGACKPECNSWEYVYYYC-NVNPCC 62
C+L +G C+ C +E Y C N CC
Sbjct: 40 CELYQGMCRNACREYEIQYLTCPNDQKCC 68
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYC-NVN 59
MK+L +FL + + P + K+ C G C+ C E Y YC N
Sbjct: 1 MKLLYLFLAILLAIE-EPVISGKR------HILRCMGNSGICRASCKKNEQPYLYCRNCQ 53
Query: 60 PCC 62
CC
Sbjct: 54 SCC 56
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPE-CNSWEYVYYYCNV- 58
+ +L +F+T + P+ K V +++C ++G C+ + C++ + CN
Sbjct: 55 ISVLLLFVTLI---------PKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
Query: 59 NPCCAVWEYQKP 70
CC W +P
Sbjct: 106 KKCCRRWWILEP 117
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPE-CNSWEYVYYYCNV- 58
+ +L +F+T + P+ K V +++C ++G C+ + C++ + CN
Sbjct: 55 ISVLLLFVTLI---------PKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
Query: 59 NPCCAVWEYQKP 70
CC W +P
Sbjct: 106 KKCCRRWWILEP 117
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 1 MKILCIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPE-CNSWEYVYYYCNV- 58
+ +L +F+T + P+ K V +++C ++G C+ + C++ + CN
Sbjct: 55 ISVLLLFVTLI---------PKAKMTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
Query: 59 NPCCAVWEYQKP 70
CC W +P
Sbjct: 106 KKCCRRWWILEP 117
>gi|116517226 beta-defensin 135 [Homo sapiens]
Length = 77
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 6 IFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYCNVNPCCAVW 65
+ L +F V G S P +++ C ++G C+P+C E C+ C V
Sbjct: 11 VVLNLLFYVPPGRSGPNVYIQKIFA---SCWRLQGTCRPKCLKNEQYRILCDTIHLCCVN 67
Query: 66 EYQKPII 72
PI+
Sbjct: 68 PKYLPIL 74
>gi|24430141 fibrillin 1 precursor [Homo sapiens]
Length = 2871
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 5 CIFLTFVFTVSCGPSVPQKKTREVAERKRECQLVRGACKPECNSWEYVYYYCNVNPCCAV 64
C+ L + +C P R EC ++ G C+ C + E Y C+ P A+
Sbjct: 1171 CVNLIGKYQCACNPGYHSTPDRLFCVDIDECSIMNGGCETFCTNSE-GSYECSCQPGFAL 1229
Query: 65 WEYQK 69
Q+
Sbjct: 1230 MPDQR 1234
>gi|114796644 regulator of chromosome condensation 1 isoform a
[Homo sapiens]
Length = 452
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 15 SCGPSVPQKKTREVAERKRECQ 36
+CGPS P +KTR V+ R +
Sbjct: 43 ACGPSPPDQKTRPVSHRSHSTE 64
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 28 VAERKRECQLVRGACKPECNSWEYVYYYC-NVNPCC 62
V ++ C +++G C+ C E V C N + CC
Sbjct: 11 VCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 28 VAERKRECQLVRGACKPECNSWEYVYYYC-NVNPCC 62
V ++ C +++G C+ C E V C N + CC
Sbjct: 11 VCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 28 VAERKRECQLVRGACKPECNSWEYVYYYC-NVNPCC 62
V ++ C +++G C+ C E V C N + CC
Sbjct: 11 VCRSQKSCWIIKGHCRKNCKPGEQVKKPCKNGDYCC 46
>gi|82734217 beta-defensin 112 [Homo sapiens]
Length = 113
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 31 RKRECQLVRGACKPECNSWEYVYYYC--NVNPCC 62
R + C + G CK +C+ E+ YC CC
Sbjct: 50 RWKSCTAIGGRCKNQCDDSEFRISYCARPTTHCC 83
>gi|18250304 beta defensin 129 precursor [Homo sapiens]
Length = 183
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 33 RECQLVRGACKPECNSWEYVYYYCNVNPCC 62
R C + G C+ CN E C + CC
Sbjct: 25 RRCLMGLGRCRDHCNVDEKEIQKCKMKKCC 54
>gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo
sapiens]
Length = 321
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 23 KKTREVAERKRECQ-LVRGACKPECNSWEYVYYYCNVNPC 61
+K E+ R+RE Q G N+W + +C V PC
Sbjct: 82 RKAEELDRRERELQHAALGGTATRQNNWPPLPSFCPVQPC 121
>gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo
sapiens]
Length = 347
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 23 KKTREVAERKRECQ-LVRGACKPECNSWEYVYYYCNVNPC 61
+K E+ R+RE Q G N+W + +C V PC
Sbjct: 108 RKAEELDRRERELQHAALGGTATRQNNWPPLPSFCPVQPC 147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,600,626
Number of Sequences: 37866
Number of extensions: 134442
Number of successful extensions: 484
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 24
length of query: 82
length of database: 18,247,518
effective HSP length: 54
effective length of query: 28
effective length of database: 16,202,754
effective search space: 453677112
effective search space used: 453677112
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.