Guide to the Human Genome
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Name: ARL5A Sequence: fasta or formatted (142aa) NCBI GI: 82546838
Description:

ADP-ribosylation factor-like 5A isoform 2

Referenced in:

ADP-Ribosylation Factors

Other entries for this name:
alt prot [179aa] ADP-ribosylation factor-like 5A isoform 1
alt mRNA [142aa] ADP-ribosylation factor-like 5A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          6           1
 C cysteine            2.8          4           2
 D aspartate           4.2          6           1
 E glutamate           9.2         13           2
 F phenylalanine       2.8          4           1
 G glycine             4.9          7           2
 H histidine           2.8          4           1
 I isoleucine          7.7         11           1
 K lysine              4.9          7           1
 L leucine             9.2         13           2
 M methionine          4.2          6           2
 N asparagine          4.9          7           2
 P proline             0.7          1           1
 Q glutamine           4.2          6           1
 R arginine            5.6          8           1
 S serine              7.0         10           2
 T threonine           7.7         11           1
 V valine              7.7         11           3
 W tryptophan          2.8          4           1
 Y tyrosine            2.1          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor-like 5A isoform 2 
ARL5A                 1.000   ADP-ribosylation factor-like 5A isoform 2 
ARL5A                 1.000   ADP-ribosylation factor-like 5A isoform 1 
ARL5B                 0.853   ADP-ribosylation factor-like 8 
ARL5C                 0.630   ADP-ribosylation factor-like 5C 
ARF3                  0.475   ADP-ribosylation factor 3 
ARF1                  0.472   ADP-ribosylation factor 1 
ARF1                  0.472   ADP-ribosylation factor 1 
ARF1                  0.472   ADP-ribosylation factor 1 
ARF1                  0.472   ADP-ribosylation factor 1 
ARL1                  0.453   ADP-ribosylation factor-like 1 
ARF4                  0.434   ADP-ribosylation factor 4 
ARF5                  0.430   ADP-ribosylation factor 5 
ARF6                  0.426   ADP-ribosylation factor 6 
TRIM23                0.389   ADP-ribosylation factor domain protein 1 isoform alph...
ARL2                  0.366   ADP-ribosylation factor-like 2 
ARL3                  0.362   ADP-ribosylation factor-like 3 
ARL14                 0.336   ADP-ribosylation factor-like 14 
TRIM23                0.328   ADP-ribosylation factor domain protein 1 isoform bet...
ARL6                  0.325   ADP-ribosylation factor-like 6 
ARL6                  0.325   ADP-ribosylation factor-like 6 
ARL11                 0.306   ADP-ribosylation factor-like 11 
TRIM23                0.306   ADP-ribosylation factor domain protein 1 isoform gam...
ARFRP1                0.302   ADP-ribosylation factor related protein 1 isoform a [...
ARL4A                 0.291   ADP-ribosylation factor-like 4A 
ARL4A                 0.291   ADP-ribosylation factor-like 4A 
ARL4A                 0.291   ADP-ribosylation factor-like 4A 
ARL4C                 0.291   ADP-ribosylation factor-like 4C 
ARFRP1                0.253   ADP-ribosylation factor related protein 1 isoform b...
ARL4D                 0.234   ADP-ribosylation factor-like 4D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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