Guide to the Human Genome
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Name: ARL5A Sequence: fasta or formatted (179aa) NCBI GI: 6912244
Description:

ADP-ribosylation factor-like 5A isoform 1

Referenced in:

ADP-Ribosylation Factors

Other entries for this name:
alt prot [142aa] ADP-ribosylation factor-like 5A isoform 2
alt prot [142aa] ADP-ribosylation factor-like 5A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          7           1
 C cysteine            2.2          4           2
 D aspartate           3.9          7           1
 E glutamate           7.8         14           2
 F phenylalanine       3.9          7           1
 G glycine             5.6         10           2
 H histidine           3.4          6           1
 I isoleucine          8.9         16           2
 K lysine              5.0          9           1
 L leucine             9.5         17           2
 M methionine          3.9          7           2
 N asparagine          5.0          9           2
 P proline             0.6          1           1
 Q glutamine           4.5          8           1
 R arginine            5.6         10           1
 S serine              6.1         11           2
 T threonine           7.8         14           2
 V valine              7.3         13           3
 W tryptophan          2.8          5           1
 Y tyrosine            2.2          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor-like 5A isoform 1 
ARL5B                 0.838   ADP-ribosylation factor-like 8 
ARL5A                 0.779   ADP-ribosylation factor-like 5A isoform 2 
ARL5A                 0.779   ADP-ribosylation factor-like 5A isoform 2 
ARL5C                 0.624   ADP-ribosylation factor-like 5C 
ARF1                  0.468   ADP-ribosylation factor 1 
ARF1                  0.468   ADP-ribosylation factor 1 
ARF1                  0.468   ADP-ribosylation factor 1 
ARF1                  0.468   ADP-ribosylation factor 1 
ARF3                  0.459   ADP-ribosylation factor 3 
ARL1                  0.450   ADP-ribosylation factor-like 1 
ARF4                  0.435   ADP-ribosylation factor 4 
ARF5                  0.426   ADP-ribosylation factor 5 
ARF6                  0.421   ADP-ribosylation factor 6 
TRIM23                0.374   ADP-ribosylation factor domain protein 1 isoform alph...
ARL3                  0.365   ADP-ribosylation factor-like 3 
ARL2                  0.362   ADP-ribosylation factor-like 2 
ARL14                 0.329   ADP-ribosylation factor-like 14 
TRIM23                0.329   ADP-ribosylation factor domain protein 1 isoform bet...
ARL11                 0.312   ADP-ribosylation factor-like 11 
TRIM23                0.309   ADP-ribosylation factor domain protein 1 isoform gam...
ARL4A                 0.303   ADP-ribosylation factor-like 4A 
ARL4A                 0.303   ADP-ribosylation factor-like 4A 
ARL4A                 0.303   ADP-ribosylation factor-like 4A 
ARL4C                 0.300   ADP-ribosylation factor-like 4C 
ARFRP1                0.297   ADP-ribosylation factor related protein 1 isoform a [...
ARL6                  0.297   ADP-ribosylation factor-like 6 
ARL6                  0.297   ADP-ribosylation factor-like 6 
ARFRP1                0.256   ADP-ribosylation factor related protein 1 isoform b...
ARL4D                 0.256   ADP-ribosylation factor-like 4D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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