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Search of human proteins with 7705630
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705630 mitochondrial ribosomal protein S18C [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705630 mitochondrial ribosomal protein S18C [Homo sapiens] 298 1e-81
gi|169216268 PREDICTED: similar to mitochondrial ribosomal prote... 254 1e-68
gi|239746839 PREDICTED: hypothetical protein XP_002344238 [Homo ... 254 1e-68
gi|239757822 PREDICTED: similar to mitochondrial ribosomal prote... 253 5e-68
gi|7662645 mitochondrial ribosomal protein S18B [Homo sapiens] 51 4e-07
gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens] 44 6e-05
gi|37674210 slingshot 2 [Homo sapiens] 33 0.079
gi|90669511 crystallin, zeta-like 1 [Homo sapiens] 29 1.5
gi|124487387 ring finger protein 207 [Homo sapiens] 28 2.6
gi|154800445 zinc finger protein 62 homolog [Homo sapiens] 27 4.4
gi|48717244 zinc finger protein 782 [Homo sapiens] 27 4.4
gi|37622343 zinc finger protein 266 [Homo sapiens] 27 4.4
gi|37622349 zinc finger protein 266 [Homo sapiens] 27 4.4
gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo sapi... 27 5.7
gi|4507691 transformation/transcription domain-associated protei... 26 9.7
gi|114688046 TBC1 domain family, member 4 [Homo sapiens] 26 9.7
gi|215820652 StAR-related lipid transfer (START) domain containi... 26 9.7
gi|215820650 StAR-related lipid transfer (START) domain containi... 26 9.7
gi|31543659 StAR-related lipid transfer (START) domain containin... 26 9.7
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 26 9.7
gi|20336724 zinc finger protein 333 [Homo sapiens] 26 9.7
gi|140560957 zinc finger protein 285 [Homo sapiens] 26 9.7
>gi|7705630 mitochondrial ribosomal protein S18C [Homo sapiens]
Length = 142
Score = 298 bits (762), Expect = 1e-81
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MAAVVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKE 60
MAAVVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKE
Sbjct: 1 MAAVVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKE 60
Query: 61 PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM
Sbjct: 61 PLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
Query: 121 PVTYKDPAYLKDPKVCNIRYRE 142
PVTYKDPAYLKDPKVCNIRYRE
Sbjct: 121 PVTYKDPAYLKDPKVCNIRYRE 142
>gi|169216268 PREDICTED: similar to mitochondrial ribosomal protein
S18C [Homo sapiens]
Length = 141
Score = 254 bits (650), Expect = 1e-68
Identities = 125/141 (88%), Positives = 130/141 (92%), Gaps = 2/141 (1%)
Query: 4 VVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQ--QVSSNEDLPISMENPYKEP 61
+VAVCGGLGRKKLTHLVTAAVSLTHPGT VL RRG SQ QVSS EDLP MENPYKE
Sbjct: 1 MVAVCGGLGRKKLTHLVTAAVSLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
Query: 62 LKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMP 121
LKKC+LCGKHV+YKN QLLSQFVSPFTGCIYGRH+TGLCGKKQKEITKAIKRAQIMGFMP
Sbjct: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
Query: 122 VTYKDPAYLKDPKVCNIRYRE 142
VTYKDPAYLKDPKVCNIRY+E
Sbjct: 121 VTYKDPAYLKDPKVCNIRYQE 141
>gi|239746839 PREDICTED: hypothetical protein XP_002344238 [Homo
sapiens]
Length = 141
Score = 254 bits (650), Expect = 1e-68
Identities = 125/141 (88%), Positives = 130/141 (92%), Gaps = 2/141 (1%)
Query: 4 VVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQ--QVSSNEDLPISMENPYKEP 61
+VAVCGGLGRKKLTHLVTAAVSLTHPGT VL RRG SQ QVSS EDLP MENPYKE
Sbjct: 1 MVAVCGGLGRKKLTHLVTAAVSLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
Query: 62 LKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMP 121
LKKC+LCGKHV+YKN QLLSQFVSPFTGCIYGRH+TGLCGKKQKEITKAIKRAQIMGFMP
Sbjct: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
Query: 122 VTYKDPAYLKDPKVCNIRYRE 142
VTYKDPAYLKDPKVCNIRY+E
Sbjct: 121 VTYKDPAYLKDPKVCNIRYQE 141
>gi|239757822 PREDICTED: similar to mitochondrial ribosomal protein
S18C [Homo sapiens]
Length = 141
Score = 253 bits (645), Expect = 5e-68
Identities = 124/141 (87%), Positives = 129/141 (91%), Gaps = 2/141 (1%)
Query: 4 VVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQ--QVSSNEDLPISMENPYKEP 61
+VAVCGGLGRKKLTHLVTAAV LTHPGT VL RRG SQ QVSS EDLP MENPYKE
Sbjct: 1 MVAVCGGLGRKKLTHLVTAAVCLTHPGTPMVLSRRGYSQYKQVSSIEDLPTPMENPYKES 60
Query: 62 LKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMP 121
LKKC+LCGKHV+YKN QLLSQFVSPFTGCIYGRH+TGLCGKKQKEITKAIKRAQIMGFMP
Sbjct: 61 LKKCVLCGKHVNYKNAQLLSQFVSPFTGCIYGRHVTGLCGKKQKEITKAIKRAQIMGFMP 120
Query: 122 VTYKDPAYLKDPKVCNIRYRE 142
VTYKDPAYLKDPKVCNIRY+E
Sbjct: 121 VTYKDPAYLKDPKVCNIRYQE 141
>gi|7662645 mitochondrial ribosomal protein S18B [Homo sapiens]
Length = 258
Score = 50.8 bits (120), Expect = 4e-07
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 71 HVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFM 120
HVD++NV+LL QFV TG I+ TG+C K+ K +T+AI++A+ G +
Sbjct: 114 HVDFRNVKLLEQFVCAHTGIIFYAPYTGVCVKQHKRLTQAIQKARDHGLL 163
>gi|8922511 mitochondrial ribosomal protein S18A [Homo sapiens]
Length = 196
Score = 43.5 bits (101), Expect = 6e-05
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 1 MAAVVAVCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNED----------- 49
MAA+ A+ G GR L A + + + L RG + V + E
Sbjct: 1 MAALKALVSGCGRLLRGLLAGPAAT-----SWSRLPARGFREVVETQEGKTTIIEGRITA 55
Query: 50 LPISMENPYKEPLKKCILCG---KH-VDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQK 105
P NP P +C +C KH +Y +V LLSQF+ P G + R ITGLC ++ +
Sbjct: 56 TPKESPNP-PNPSGQCPICRWNLKHKYNYDDVLLLSQFIRPHGGML-PRKITGLCQEEHR 113
Query: 106 EITKAIKRAQIMGFMP 121
+I + +K A G +P
Sbjct: 114 KIEECVKMAHRAGLLP 129
>gi|37674210 slingshot 2 [Homo sapiens]
Length = 1423
Score = 33.1 bits (74), Expect = 0.079
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 17 THLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKEPLKKCILCGKHVDYKN 76
THL++A++ HP T++ G ++Q SS D P + + ++E + + G V YK+
Sbjct: 1122 THLLSASLDYLHP--QTMVHLEGFTEQ-SSTTDEPSAEQVSWEESQESPLSSGSEVPYKD 1178
Query: 77 VQLLSQFVS 85
QL S +S
Sbjct: 1179 SQLSSADLS 1187
>gi|90669511 crystallin, zeta-like 1 [Homo sapiens]
Length = 349
Score = 28.9 bits (63), Expect = 1.5
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 48 EDLPISMENPYKEPLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEI 107
EDLP++ +N K +K C L N +LL++ GR I G+ ++
Sbjct: 23 EDLPVTEDNFVKLQVKACAL-----SQINTKLLAEMKMKKDLFPVGREIAGIVLDVGSKV 77
Query: 108 TKAIKRAQIMGFMPVTYKDP 127
+ +++G +P+ +DP
Sbjct: 78 SFFQPDDEVVGILPLDSEDP 97
>gi|124487387 ring finger protein 207 [Homo sapiens]
Length = 634
Score = 28.1 bits (61), Expect = 2.6
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 51 PISMENPYKEPLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITG 98
P S++ P PL C LC HV Y+ LL F GC+ GR G
Sbjct: 12 PSSLDAPSIHPLV-CPLC--HVQYERPCLLDCFHDFCAGCLRGRATDG 56
>gi|154800445 zinc finger protein 62 homolog [Homo sapiens]
Length = 840
Score = 27.3 bits (59), Expect = 4.4
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 8 CGGLGRKKLTHLVTAAVSLTHPGT--HTVLWRRGCSQQVSSNEDLPISMENPYKEPLKKC 65
C G+ ++H THPG HT C + S+ L E KC
Sbjct: 615 CDVCGKAYISHSSLINHKSTHPGKTPHTC---DECGKAFFSSRTLISHKRVHLGEKPFKC 671
Query: 66 ILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGK 102
+ CGK Y + LLSQ TG ++ CGK
Sbjct: 672 VECGKSFSYSS--LLSQHKRIHTG--EKPYVCDRCGK 704
>gi|48717244 zinc finger protein 782 [Homo sapiens]
Length = 699
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 39 GCSQQVSSNEDLPISMENPYKEPLKKCILCGKHVDYKNVQLLSQ 82
GC + S+ L I E +C CGK +YK++ ++ Q
Sbjct: 426 GCDKAFSAKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQ 469
>gi|37622343 zinc finger protein 266 [Homo sapiens]
Length = 549
Score = 27.3 bits (59), Expect = 4.4
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 8 CGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKEPLKKCIL 67
C G+ + H TH G W+ C + + DL + ++ E KC
Sbjct: 158 CSDSGKSFINHSHLQGHLRTHNGESLHEWKE-CGRGFIHSTDLAVRIQTHRSEKPYKCKE 216
Query: 68 CGKHVDY 74
CGK Y
Sbjct: 217 CGKGFRY 223
>gi|37622349 zinc finger protein 266 [Homo sapiens]
Length = 549
Score = 27.3 bits (59), Expect = 4.4
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 8 CGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKEPLKKCIL 67
C G+ + H TH G W+ C + + DL + ++ E KC
Sbjct: 158 CSDSGKSFINHSHLQGHLRTHNGESLHEWKE-CGRGFIHSTDLAVRIQTHRSEKPYKCKE 216
Query: 68 CGKHVDY 74
CGK Y
Sbjct: 217 CGKGFRY 223
>gi|194440660 topoisomerase (DNA) II binding protein 1 [Homo
sapiens]
Length = 1522
Score = 26.9 bits (58), Expect = 5.7
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 31/130 (23%)
Query: 7 VCGGLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNEDLPISMENPYKEPLKKCI 66
+ G +G KK + P LW + ++++ D I+ME+ +K P+
Sbjct: 147 IAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEKKITRYTD--INMED-FKCPI---- 199
Query: 67 LCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKR--AQIMGFMPVTY 124
F GCI +TGLCG +KE+ + + Q MG + +
Sbjct: 200 --------------------FLGCIIC--VTGLCGLDRKEVQQLTVKHGGQYMGQLKMNE 237
Query: 125 KDPAYLKDPK 134
+++PK
Sbjct: 238 CTHLIVQEPK 247
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 26.2 bits (56), Expect = 9.7
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 58 YKEP--LKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITK--AIKR 113
+KEP L C+L +Y +++LL Q + FTG + ++T L ++EI K +I +
Sbjct: 1672 WKEPKLLAYCLLNYCKRNYGDIELLFQLLRAFTG-RFLCNMTFLKEYMEEEIPKNYSIAQ 1730
Query: 114 AQIMGFMPVTYKDPAY 129
+ + F V + DP +
Sbjct: 1731 KRALFFRFVDFNDPNF 1746
>gi|114688046 TBC1 domain family, member 4 [Homo sapiens]
Length = 1298
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 59 KEPLKKCILCGKHVDYKNVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKR 113
K +K C C H +K + + P + RH++ L +Q +I + +++
Sbjct: 447 KTQIKLCEACPMHSLHKLCERIEGLYPPRAKLVIQRHLSSLTDNEQADIFERVQK 501
>gi|215820652 StAR-related lipid transfer (START) domain containing 8
isoform b [Homo sapiens]
Length = 1023
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 10 GLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNED 49
GLGR +LTH+ A + P + ++ C+ +V+ D
Sbjct: 970 GLGRSRLTHICRADLRGRSPDWYNKVFGHLCAMEVAKIRD 1009
>gi|215820650 StAR-related lipid transfer (START) domain containing 8
isoform a [Homo sapiens]
Length = 1103
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 10 GLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNED 49
GLGR +LTH+ A + P + ++ C+ +V+ D
Sbjct: 1050 GLGRSRLTHICRADLRGRSPDWYNKVFGHLCAMEVAKIRD 1089
>gi|31543659 StAR-related lipid transfer (START) domain containing 8
isoform b [Homo sapiens]
Length = 1023
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 10 GLGRKKLTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNED 49
GLGR +LTH+ A + P + ++ C+ +V+ D
Sbjct: 970 GLGRSRLTHICRADLRGRSPDWYNKVFGHLCAMEVAKIRD 1009
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 16 LTHLVTAAVSLTHPGTHTVLWRRGCSQQVSSNE 48
+THL + THP + VLW S + NE
Sbjct: 1054 MTHLNLSYNQDTHPAINDVLWACALSHSLGKNE 1086
>gi|20336724 zinc finger protein 333 [Homo sapiens]
Length = 665
Score = 26.2 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 28 HPGTHTVLWRRGCSQQVSSNEDLPISMENPYKEPL 62
H + TV R ++ N LP+SM +PY PL
Sbjct: 629 HSSSLTVHKRTHVGRETIRNGSLPLSMSHPYCGPL 663
>gi|140560957 zinc finger protein 285 [Homo sapiens]
Length = 590
Score = 26.2 bits (56), Expect = 9.7
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 40 CSQQVSSNEDLPISMENPYKEPLKKCILCGKHVDYKNVQLLSQFV----SPFTGCIYGRH 95
C + S N DL + + +E KC CGK + L Q V + +T C G+
Sbjct: 517 CGKGFSRNSDLNVHLRVHTRERPYKCKACGKGFSRNSYLLAHQRVHIDETQYTHCERGKD 576
Query: 96 I 96
+
Sbjct: 577 L 577
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,782,109
Number of Sequences: 37866
Number of extensions: 237158
Number of successful extensions: 543
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 23
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.