Guide to the Human Genome
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Name: MRPS18C Sequence: fasta or formatted (142aa) NCBI GI: 7705630
Description:

mitochondrial ribosomal protein S18C

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          8           2
 C cysteine            4.9          7           1
 D aspartate           2.8          4           1
 E glutamate           3.5          5           1
 F phenylalanine       2.1          3           1
 G glycine             7.7         11           2
 H histidine           3.5          5           1
 I isoleucine          5.6          8           1
 K lysine             10.6         15           2
 L leucine             8.5         12           2
 M methionine          2.8          4           1
 N asparagine          2.8          4           1
 P proline             5.6          8           1
 Q glutamine           4.2          6           2
 R arginine            4.9          7           2
 S serine              4.9          7           2
 T threonine           6.3          9           1
 V valine              8.5         12           2
 W tryptophan          0.7          1           1
 Y tyrosine            4.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein S18C 
LOC100133779          0.839   PREDICTED: similar to mitochondrial ribosomal prote...
LOC100288560          0.839   PREDICTED: hypothetical protein XP_002344238 
LOC100294048          0.835   PREDICTED: similar to mitochondrial ribosomal prote...
MRPS18B               0.095   mitochondrial ribosomal protein S18B 
MRPS18A               0.070   mitochondrial ribosomal protein S18A 
SSH2                  0.029   slingshot 2 
CRYZL1                0.015   crystallin, zeta-like 1 
RNF207                0.011   ring finger protein 207 
ZFP62                 0.007   zinc finger protein 62 homolog 
ZNF782                0.007   zinc finger protein 782 
ZNF266                0.007   zinc finger protein 266 
ZNF266                0.007   zinc finger protein 266 
TOPBP1                0.007   topoisomerase (DNA) II binding protein 1 
TRRAP                 0.004   transformation/transcription domain-associated protei...
TBC1D4                0.004   TBC1 domain family, member 4 
STARD8                0.004   StAR-related lipid transfer (START) domain containi...
STARD8                0.004   StAR-related lipid transfer (START) domain containi...
STARD8                0.004   StAR-related lipid transfer (START) domain containin...
ZSWIM6                0.004   zinc finger, SWIM-type containing 6 
ZNF333                0.004   zinc finger protein 333 
ZNF285A               0.004   zinc finger protein 285 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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