Search of human proteins with 14141193

Search of human proteins with 14141193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14141193 ribosomal protein S9 [Homo sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14141193 ribosomal protein S9 [Homo sapiens]                       387   e-108
gi|8922794 U3 snoRNP protein 3 homolog [Homo sapiens]                  59   2e-09
gi|118722349 RNA binding motif protein 12B [Homo sapiens]              37   0.014
gi|170650705 transforming growth factor beta regulator 1 [Homo s...    29   2.9  
gi|4758646 kinesin family member 3B [Homo sapiens]                     28   3.7  
gi|101943240 general transcription factor IIIC, polypeptide 1, a...    28   3.7  
gi|157743275 calneuron 1 isoform 1 [Homo sapiens]                      28   6.4  
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula...    28   6.4  
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni...    28   6.4  
gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]            27   8.4  

>gi|14141193 ribosomal protein S9 [Homo sapiens]
          Length = 194

 Score =  387 bits (993), Expect = e-108
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 60
           MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
Sbjct: 1   MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 60

Query: 61  LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120
           LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
Sbjct: 61  LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120

Query: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
           KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180

Query: 181 GQGGAGAGDDEEED 194
           GQGGAGAGDDEEED
Sbjct: 181 GQGGAGAGDDEEED 194


>gi|8922794 U3 snoRNP protein 3 homolog [Homo sapiens]
          Length = 184

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 28  ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 87
           EL+++  Y L+ + +  R       +R+ AR L  L E+D  R+    ALL +L  +G++
Sbjct: 30  ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89

Query: 88  D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145
              G ++L D++       F  RRL T + KL +A+ +  A   + Q H+RV   VV  P
Sbjct: 90  PTRGSLELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDP 146

Query: 146 SFIV 149
           +F+V
Sbjct: 147 AFLV 150


>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
          Length = 1001

 Score = 36.6 bits (83), Expect = 0.014
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 23/126 (18%)

Query: 61  LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120
           L++DE+D R  F G  L    +R    DE + +  +++   ++D+              A
Sbjct: 293 LSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDY------------NTA 340

Query: 121 KSIHHARVLIRQRHIR--VRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNA 178
            S+H   +  R  HI    RKQ++    FI R + ++             RPG V +K +
Sbjct: 341 LSLHKTVLQYRPVHIDPISRKQML---KFIARYEKKR------SGSLERDRPGHVSQKYS 391

Query: 179 KKGQGG 184
           ++G  G
Sbjct: 392 QEGNSG 397


>gi|170650705 transforming growth factor beta regulator 1 [Homo
          sapiens]
          Length = 411

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 18/90 (20%)

Query: 15 TPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAR-----------ELLTL 63
          +PR P + S+   +     +   +++ E +R+K+   ++RKAA+           E+  L
Sbjct: 10 SPRAPLQSSKARMK-----KLPKKSQNEKYRLKYL--RLRKAAKATVFENAAICDEIARL 62

Query: 64 DEKDPRRLFEGNALLRRLVRIGVLDEGKMK 93
          +EK  +   E   LL++L+++  L EG+++
Sbjct: 63 EEKFLKAKEERRYLLKKLLQLQALTEGEVQ 92


>gi|4758646 kinesin family member 3B [Homo sapiens]
          Length = 747

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 171 GRVKRKNAKKGQGGAGAGDDEEED 194
           GR KR+  ++  GG+G G +EEE+
Sbjct: 375 GRRKRREKRREGGGSGGGGEEEEE 398


>gi|101943240 general transcription factor IIIC, polypeptide 1,
           alpha 220kDa [Homo sapiens]
          Length = 2109

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 106 LERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPS-----FIVRLDSQKHID 158
           L+R L T  FK+   K  +H ++L +   I ++  V+ +P+      I+ L ++ H+D
Sbjct: 193 LQRDLHTTAFKVDAGKLHYHRKILNKNGLITMQSHVIRLPTGAQQHSILLLLNRFHVD 250


>gi|157743275 calneuron 1 isoform 1 [Homo sapiens]
          Length = 261

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 169 RPGRVKRKNAKKGQGGAGAGDDE 191
           +PG  K +N KKG GGA  G +E
Sbjct: 6   QPGEGKPENEKKGDGGALGGGEE 28


>gi|239757810 PREDICTED: similar to protein phosphatase 1,
           regulatory (inhibitor) subunit 3F [Homo sapiens]
          Length = 724

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 164 PYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
           P+GG  PG  K   A    GG G G DE++D
Sbjct: 56  PWGG--PGAGKMAAAAGQDGGGGGGADEDDD 84


>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
           3F [Homo sapiens]
          Length = 799

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 164 PYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
           P+GG  PG  K   A    GG G G DE++D
Sbjct: 56  PWGG--PGAGKMAAAAGQDGGGGGGADEDDD 84


>gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]
          Length = 478

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 46  VKFTLAKIRKAARELLTLDEK---DPRRLFEGNALLRRLVRIGVLDEGKMKL----DYIL 98
           VK TL+KIR   RE+ +L E+   +P  +        +LV  G L +   KL      +L
Sbjct: 355 VKLTLSKIRSLKREMRSLSEECSLEPVTVAMAYVYFEKLVLQGKLSKQNRKLCAGACVLL 414

Query: 99  GLKIEDFLERRLQTQV 114
             KI   L +   TQ+
Sbjct: 415 AAKISSDLRKSGVTQL 430


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.142    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,282,897
Number of Sequences: 37866
Number of extensions: 301891
Number of successful extensions: 927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 14
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.