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Search of human proteins with 14110420
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
(355 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 738 0.0
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 687 0.0
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 595 e-170
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 544 e-155
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 404 e-113
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 399 e-111
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 328 3e-90
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 200 2e-51
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 199 2e-51
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 198 7e-51
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 196 3e-50
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 196 3e-50
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 195 5e-50
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 195 5e-50
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 178 7e-45
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 178 7e-45
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 177 1e-44
gi|20373175 musashi 2 isoform a [Homo sapiens] 171 7e-43
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 168 6e-42
gi|25121993 musashi 2 isoform b [Homo sapiens] 167 1e-41
gi|4505255 musashi 1 [Homo sapiens] 164 9e-41
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 150 1e-36
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 150 1e-36
gi|6678271 TAR DNA binding protein [Homo sapiens] 117 1e-26
gi|55956788 nucleolin [Homo sapiens] 83 3e-16
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 83 4e-16
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 83 4e-16
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 83 4e-16
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 76 4e-14
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 75 1e-13
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 738 bits (1906), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
Sbjct: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 687 bits (1773), Expect = 0.0
Identities = 336/355 (94%), Positives = 336/355 (94%), Gaps = 19/355 (5%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ
Sbjct: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 281
Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY
Sbjct: 282 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 595 bits (1535), Expect = e-170
Identities = 305/355 (85%), Positives = 306/355 (86%), Gaps = 49/355 (13%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 284
Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 285 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 306
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 544 bits (1402), Expect = e-155
Identities = 286/355 (80%), Positives = 287/355 (80%), Gaps = 68/355 (19%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
Query: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
Query: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 265
Query: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 266 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 287
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 404 bits (1038), Expect = e-113
Identities = 215/348 (61%), Positives = 251/348 (72%), Gaps = 41/348 (11%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
Query: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
Query: 260 KEQYQQQQQWGSRGGFAGRARGR--------GGGPSQNWNQGYSNYWNQGYGNYGYNSQG 311
KE Y QQQQ+GS GG R RG GGG SQ+WNQGY NYWNQGYG QG
Sbjct: 232 KEVY-QQQQYGS-GGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYG----YQQG 285
Query: 312 YG-GYGGYDYTGYNNYYGYG---DYSNQQSGYGKVSRRGGHQNSYKPY 355
YG GYGGYDY+ Y YYGYG DYS + YGK RRGGHQN+YKPY
Sbjct: 286 YGPGYGGYDYSPY-GYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY 332
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 399 bits (1026), Expect = e-111
Identities = 199/307 (64%), Positives = 235/307 (76%), Gaps = 33/307 (10%)
Query: 63 SEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGE 122
+EG+KI+ASKN++D+G KMFIGGLSWDT+KKDL +Y S+FGE
Sbjct: 133 AEGSKINASKNQQDDG-------------------KMFIGGLSWDTSKKDLTEYLSRFGE 173
Query: 123 VVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVK 182
VVDCT+K DP+TGRSRGFGFVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP K
Sbjct: 174 VVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPK 233
Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
K+FVGGLSPDT EE+I+EYFG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 243 KYHNVGLSKCEIKVAMSKEQY--QQQQQWGSRG---GFAGRARGRGGGPSQNWNQGYSNY 297
+YH +G KCEIKVA KE Y QQQQQ G RG G G RGRG G QNWNQG++NY
Sbjct: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNY 353
Query: 298 WNQGYGNYGY---NSQGYGGYGGYDYTGYN--NY---YGYGDYSNQQSGYGKVSRRGG-H 348
++QGYGNY Q Y GYGGYDYTGYN NY GY DYS QQS YGK SR GG H
Sbjct: 354 YDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNH 413
Query: 349 QNSYKPY 355
QN+Y+PY
Sbjct: 414 QNNYQPY 420
Score = 61.6 bits (148), Expect = 1e-09
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
Query: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
D T + RGF F+ FK+ V K++E K H +
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 328 bits (842), Expect = 3e-90
Identities = 181/336 (53%), Positives = 216/336 (64%), Gaps = 64/336 (19%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGH 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED G
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAG- 70
Query: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
KMF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRG
Sbjct: 71 ------------------KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112
Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 199
FGF+LFK++ SV+KV+DQKEH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIR
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIR 171
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYFG FGE+E+IELPMD K NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA
Sbjct: 172 EYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQP 231
Query: 260 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 319
KE YQQQQ Y + G GN ++G GG GG
Sbjct: 232 KEVYQQQQ-----------------------------YGSGGRGNRNRGNRGSGGGGGGG 262
Query: 320 YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
G NY GK RRGGHQN+YKPY
Sbjct: 263 GQGSTNY-------------GKSQRRGGHQNNYKPY 285
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 200 bits (508), Expect = 2e-51
Identities = 114/298 (38%), Positives = 165/298 (55%), Gaps = 32/298 (10%)
Query: 69 DASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTL 128
D+ + G P+ E K+FIGGLS++TT L+++F K+G + DC +
Sbjct: 13 DSGRRRRRRGEEGHDPKEPEQLR------KLFIGGLSFETTDDSLREHFEKWGTLTDCVV 66
Query: 129 KLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VK 182
DP T RSRGFGFV + E VD M + HK++G+V++PKRA + + VK
Sbjct: 67 MRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVK 126
Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
KIFVGG+ DT E +R+YF +G++E+IE+ D ++ K+RGF F+TF + + V KI+ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRG---GGPSQNWNQGYSNYWN 299
KYH + CE+K A+SK++ Q RGG +G GRG GG N+ +G +
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGR 246
Query: 300 QGY--------GNYGYNSQGYGGYG--GYDY---TGYNNYYGYG----DYSNQQSGYG 340
GY G+YG GY G+G G +Y GY++ GYG Y NQ GYG
Sbjct: 247 GGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYG 304
Score = 29.3 bits (64), Expect = 5.6
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 273 GGFAGRARGRGGGPSQNWN---QGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYG 328
G F G G GG + N Q SNY G++G S G GGY G + YG
Sbjct: 316 GNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYG 374
Score = 28.9 bits (63), Expect = 7.3
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 199 bits (507), Expect = 2e-51
Identities = 108/287 (37%), Positives = 167/287 (58%), Gaps = 19/287 (6%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Query: 261 EQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNY-------WNQGYGNYGYNSQ 310
++ Q+ S G G RG G G + N+ +G N+ ++G G YG +
Sbjct: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNFSGRGGFGGSRGGGGYGGSGD 242
Query: 311 GYGGYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
GY G+G G ++ G +Y +G+Y+NQ S +G + S PY
Sbjct: 243 GYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
E V M + H V E K A+S+E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 198 bits (503), Expect = 7e-51
Identities = 112/280 (40%), Positives = 164/280 (58%), Gaps = 19/280 (6%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ + K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV +
Sbjct: 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+SK
Sbjct: 124 YFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183
Query: 261 EQY---QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGG 317
++ Q+ S G G RG G G + N+ +G N+ G G +G S+G GGYGG
Sbjct: 184 QEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRG-GNF--SGRGGFG-GSRGGGGYGG 239
Query: 318 Y--DYTGYNNYYGYG----DYSNQQSGYGKVSRRGGHQNS 351
Y G+ N GYG YS GYG + G+Q S
Sbjct: 240 SGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGS 279
Score = 59.3 bits (142), Expect = 5e-09
Identities = 31/95 (32%), Positives = 53/95 (55%)
Query: 171 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 230
++++ K E ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T+
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 231 KEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
E V M + H V E K A+S+E Q+
Sbjct: 63 ATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 270 GSRGGFAGRARGR-GGGPSQN----WNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYN 324
G GGF G + GGG S N +N SN+ GN+G S G G GG +
Sbjct: 293 GGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPR 352
Query: 325 NYYGYGDYSNQQSGYGKVSR 344
N GYG S+ S YG R
Sbjct: 353 NQGGYGG-SSSSSSYGSGRR 371
Score = 30.4 bits (67), Expect = 2.5
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
Query: 56 TEGGSAESEGAKIDASKN 73
GGS G + S N
Sbjct: 307 GGGGSYNDFGNYNNQSSN 324
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 196 bits (498), Expect = 3e-50
Identities = 115/321 (35%), Positives = 173/321 (53%), Gaps = 53/321 (16%)
Query: 88 EAATAQREEW-KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
E ++E++ K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFGFV F
Sbjct: 11 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIRE 200
VD M + H ++G+V++PKRA A + VKK+FVGG+ DT E +R+
Sbjct: 71 SMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRD 130
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
YF +G++++IE+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++ A+S+
Sbjct: 131 YFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 190
Query: 261 EQYQQ-QQQWGSRGGFAGRARGRGG------GPSQNWNQGYSNY-----WNQGYGNY--- 305
++ Q+ Q RGG G RGG GP N+ G Y + GY Y
Sbjct: 191 QEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGG 250
Query: 306 ------------------------GYNSQGYGGYGGYD-YTGYN----NYYGYGDYSNQQ 336
GY +QG G GGYD Y G N NY +G+Y+ Q
Sbjct: 251 PGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQP 310
Query: 337 SGYG--KVSRRGGHQNSYKPY 355
S YG K GG +N PY
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPY 331
Score = 33.1 bits (74), Expect = 0.39
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 273 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 322
GG+ G GGG N+NQ SNY GN+G + G YGG +Y G
Sbjct: 281 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 340
Query: 323 YNNYYGYGDYS 333
GYG S
Sbjct: 341 SGGSGGYGGRS 351
Score = 28.9 bits (63), Expect = 7.3
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 20 GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79
GG G G G G G G G GG GG ++ G S N D G+
Sbjct: 249 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 305
Query: 80 SNSSP 84
N P
Sbjct: 306 YNQQP 310
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 196 bits (497), Expect = 3e-50
Identities = 113/310 (36%), Positives = 167/310 (53%), Gaps = 52/310 (16%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFGFV F VD M
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 158 KEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
+ H ++G+V++PKRA A + VKK+FVGG+ DT E +R+YF +G++++I
Sbjct: 70 RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ-QQQWG 270
E+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++ A+S+++ Q+ Q
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189
Query: 271 SRGGFAGRARGRGG------GPSQNWNQGYSNY-----WNQGYGNY-------------- 305
RGG G RGG GP N+ G Y + GY Y
Sbjct: 190 GRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPG 249
Query: 306 -------------GYNSQGYGGYGGYD-YTGYN----NYYGYGDYSNQQSGYG--KVSRR 345
GY +QG G GGYD Y G N NY +G+Y+ Q S YG K
Sbjct: 250 YGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNF 309
Query: 346 GGHQNSYKPY 355
GG +N PY
Sbjct: 310 GGSRNMGGPY 319
Score = 56.6 bits (135), Expect = 3e-08
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 176 KTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEP 235
+ KE +K+F+GGLS +T EE +R Y+ +G++ + D + + RGF F+TF
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 236 VKKIMEKKYHNVGLSKCEIKVAMSKEQ 262
V M + H++ E K A+++E+
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREE 89
Score = 33.1 bits (74), Expect = 0.39
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 273 GGFAGRARGRGGG--------PSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDY--TG 322
GG+ G GGG N+NQ SNY GN+G + G YGG +Y G
Sbjct: 269 GGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG 328
Query: 323 YNNYYGYGDYS 333
GYG S
Sbjct: 329 SGGSGGYGGRS 339
Score = 28.9 bits (63), Expect = 7.3
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 20 GGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGH 79
GG G G G G G G G GG GG ++ G S N D G+
Sbjct: 237 GGPGGGNFGGSPGYGGGRGGYGGGGPGYGN---QGGGYGGGYDNYGGGNYGSGNYNDFGN 293
Query: 80 SNSSP 84
N P
Sbjct: 294 YNQQP 298
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 195 bits (496), Expect = 5e-50
Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 17/275 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV + E VD M+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+YF +G++E I
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQW 269
E+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+ K++ Q
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
Query: 270 GSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNSQGYGGYG--GYDY 320
G RG G G RG G G + N+ +G + G+ G YG + GY G+G G ++
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254
Query: 321 TGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
G +Y +G+Y+NQ S +G + S PY
Sbjct: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M H V E K A+S+E Q+
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 195 bits (496), Expect = 5e-50
Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 17/275 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV + E VD M+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
HK++G+V++PKRA + + + VKKIFVGG+ DT E +R+YF +G++E I
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQY--QQQQQW 269
E+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+ K++ Q
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194
Query: 270 GSRG-GFAGRARGRGGGPSQNWNQGYSNYWNQGY------GNYGYNSQGYGGYG--GYDY 320
G RG G G RG G G + N+ +G + G+ G YG + GY G+G G ++
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254
Query: 321 TGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
G +Y +G+Y+NQ S +G + S PY
Sbjct: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
Score = 57.8 bits (138), Expect = 1e-08
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGLS +T +E +R +F +G + + D T + RGF F+T
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M H V E K A+S+E Q+
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQR 97
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 178 bits (451), Expect = 7e-45
Identities = 99/277 (35%), Positives = 163/277 (58%), Gaps = 20/277 (7%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
Query: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQGYG 313
++ Q+ G F G GRGGG S N N G+ ++ G+ G++G ++ GY
Sbjct: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240
Query: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348
G+G G ++ G ++Y +G+ +NQ S +G + +GG+
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
Score = 55.8 bits (133), Expect = 6e-08
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M + H +G E K A+S+E Q+
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 178 bits (451), Expect = 7e-45
Identities = 99/277 (35%), Positives = 163/277 (58%), Gaps = 20/277 (7%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
Query: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWN--QGY-GNYGYNSQGYG 313
++ Q+ G F G GRGGG S N N G+ ++ G+ G++G ++ GY
Sbjct: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYN 240
Query: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348
G+G G ++ G ++Y +G+ +NQ S +G + +GG+
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
Score = 55.8 bits (133), Expect = 6e-08
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M + H +G E K A+S+E Q+
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 177 bits (450), Expect = 1e-44
Identities = 100/277 (36%), Positives = 162/277 (58%), Gaps = 20/277 (7%)
Query: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
SE+ ++ K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV +
Sbjct: 4 SESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYV 63
Query: 147 ESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIRE 200
E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +R+
Sbjct: 64 TVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPLRD 123
Query: 201 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260
Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+SK
Sbjct: 124 YYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKALSK 183
Query: 261 EQY----QQQQQWGSRGGFAGRARGRGGGPSQNWNQGY-SNYWNQG--YGNYGYNSQGYG 313
++ Q+ G F G GRGGG S N N G+ N+ G G++G ++ GY
Sbjct: 184 QKMASAPSSQRSRSGSGNFGG---GRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYN 240
Query: 314 GYG--GYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 348
G+G G ++ G ++Y +G+ +NQ S +G + +GG+
Sbjct: 241 GFGNDGKNFGGGSSYNDFGNCNNQSSNFGPM--KGGN 275
Score = 55.8 bits (133), Expect = 6e-08
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 172 AKAMKTKEP--VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229
+K+ KEP ++K+F+GGL +T +E +R + +G + + D TN+ RGF F+
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQ 265
+ E V M + H +G E K A+S+E Q+
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQR 97
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 171 bits (434), Expect = 7e-43
Identities = 101/252 (40%), Positives = 130/252 (51%), Gaps = 19/252 (7%)
Query: 80 SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139
+ S A +Q + KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRG
Sbjct: 4 NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
Query: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPE 195
FGFV F + SVDKV+ Q H+L+ K IDPK R K KKIFVGGLS +T
Sbjct: 64 FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
Query: 196 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 255
E +++YF FG+VE L D TN+ RGF F+TF+ E+ V+K+ E +H + E K
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
Query: 256 VAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQG 311
A KE F RGR G + GY N YG G
Sbjct: 184 KAQPKEVM-----------FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPG 232
Query: 312 YGGYGGYDYTGY 323
+ GY + G+
Sbjct: 233 FAPSYGYQFPGF 244
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 168 bits (426), Expect = 6e-42
Identities = 102/266 (38%), Positives = 139/266 (52%), Gaps = 15/266 (5%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 158 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 211
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQ-YQQQQQWG 270
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE Y G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
Query: 271 SRGGFAGR-ARGRGGGPSQNWNQGYSNYWNQGYGNY-GYNSQGYGGYGGYDYTGYNNYYG 328
SR GR RGRGGG QN G S GY +Y GY G GGY Y G + YG
Sbjct: 188 SRSSRGGRGGRGRGGGRDQN---GLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYG 244
Query: 329 YGDYSNQQSGYGKVSRRGGHQNSYKP 354
DY N G+G S+ HQ+SY P
Sbjct: 245 GSDYGNGFGGFGSYSQ---HQSSYGP 267
Score = 28.9 bits (63), Expect = 7.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 167 bits (424), Expect = 1e-41
Identities = 98/234 (41%), Positives = 123/234 (52%), Gaps = 19/234 (8%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM---------- 187
Query: 274 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQGYGGYGGYDYTGY 323
F RGR G + GY N YG G+ GY + Y
Sbjct: 188 -FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240
Score = 61.2 bits (147), Expect = 1e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 180 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 239
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 240 MEKKYHNVGLSKCEIKVAMSK 260
+ + +H + + KVA +
Sbjct: 75 LGQPHHELDSKTIDPKVAFPR 95
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 164 bits (416), Expect = 9e-41
Identities = 98/236 (41%), Positives = 126/236 (53%), Gaps = 19/236 (8%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV+ Q
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 158 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+ L
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML 140
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 273
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 141 MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP-------- 192
Query: 274 GFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTGYNNYYGY 329
G ARGR S+ G + G G GY Y YTG Y Y
Sbjct: 193 --TGSARGR----SRVMPYGMDAFM-LGIGMLGYPGFQATTYASRSYTGLAPGYTY 241
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 150 bits (380), Expect = 1e-36
Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 30/245 (12%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V V+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
+ H L+G+ IDPK R K K P KIFVGG+ + E ++R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 260 KEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGNYGYN 308
++ Q QWGSR A G G P W QGY W Q G YG
Sbjct: 191 RDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 249
Query: 309 SQGYG 313
G G
Sbjct: 250 PAGRG 254
Score = 55.8 bits (133), Expect = 6e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
+ + K+FVGGL T +E +R YF +GEV + D TN+ RGF F+ FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
++ + H N+ C + M E+ + ++ W
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 150 bits (380), Expect = 1e-36
Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 30/245 (12%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
K+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V V+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
+ H L+G+ IDPK R K K P KIFVGG+ + E ++R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
Query: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
EYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
Query: 260 KEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGNYGYN 308
++ Q QWGSR A G G P W QGY W Q G YG
Sbjct: 191 RDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 249
Query: 309 SQGYG 313
G G
Sbjct: 250 PAGRG 254
Score = 55.8 bits (133), Expect = 6e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
+ + K+FVGGL T +E +R YF +GEV + D TN+ RGF F+ FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
++ + H N+ C + M E+ + ++ W
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 117 bits (294), Expect = 1e-26
Identities = 79/248 (31%), Positives = 133/248 (53%), Gaps = 19/248 (7%)
Query: 71 SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL 130
+K + DE ++S+ + A + + + GL W TT++DLK+YFS FGEV+ +K
Sbjct: 81 NKRKMDETDASSAVKVKRAVQKTSD---LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK-EPV--KKIFVG 187
D TG S+GFGFV F E E+ KVM Q+ H ++G+ D K + +++ EP+ +K+FVG
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVG 196
Query: 188 GLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK----K 243
+ D E+++RE+F +G+V + +P R F F+TF +++ + + + K
Sbjct: 197 RCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFADDQIAQSLCGEDLIIK 251
Query: 244 YHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF---AGRARGRGGGPSQNWNQGYSNYWNQ 300
+V +S E K +++ + + G+ GGF G RGGG NQG +
Sbjct: 252 GISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGM 311
Query: 301 GYGNYGYN 308
+G + N
Sbjct: 312 NFGAFSIN 319
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 83.2 bits (204), Expect = 3e-16
Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 26/272 (9%)
Query: 62 ESEGAKIDA---SKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
E +G +ID S E N R + +T E + + LS+ T++ L++ F
Sbjct: 448 EKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 507
Query: 119 KFGEVVDCTLKLDPIT--GRSRGFGFVLFKESESVDKVMDQ-KEHKLNGKVI----DPKR 171
K T P G+S+G+ F+ F E + ++ + ++ G+ I R
Sbjct: 508 K------ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 561
Query: 172 AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 231
+P K +FV GLS DT EE ++E F G + D +T +GF F+ F
Sbjct: 562 GSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIV---TDRETGSSKGFGFVDFN 618
Query: 232 EEEPVKKIME-KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNW 290
EE K E + + +K + A K + + G RGGF GR GRGG
Sbjct: 619 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGG------ 672
Query: 291 NQGYSNYWNQGYGNYGYNSQGYGGYGGYDYTG 322
G+ G+G G G GG G + G
Sbjct: 673 RGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQG 704
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 82.8 bits (203), Expect = 4e-16
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 72 KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
+N +EG NSS + E + EE + +FI L++DTT++ LK+ FSK G V
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
C++ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818
Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
R K + K+ KI V + +IRE F FGE++++ LP T RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878
Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
+ F ++ K+ H+ L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900
Score = 48.1 bits (113), Expect = 1e-05
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 59 GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
G+ + +G + E + E T + + G ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315
Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
V ++ G G+ FV F E V + + + G+ I+ R K + T
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373
Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
+ K +FV L + EE + + F +G + +
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
P+D+ T K +GF FITF E K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 42.0 bits (97), Expect = 8e-04
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
E ++F+ L + +T++DL+ FSK+G + + +D +T + +GF F+ F E K
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 155 MDQ 157
+
Sbjct: 460 YSE 462
Score = 35.0 bits (79), Expect = 0.10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 158 KEHKLNGKVIDPKR 171
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 241 EKKYHNVGLSKCEIKVAMSK 260
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 82.8 bits (203), Expect = 4e-16
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 72 KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
+N +EG NSS + E + EE + +FI L++DTT++ LK+ FSK G V
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
C++ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818
Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
R K + K+ KI V + +IRE F FGE++++ LP T RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878
Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
+ F ++ K+ H+ L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900
Score = 48.1 bits (113), Expect = 1e-05
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 59 GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
G+ + +G + E + E T + + G ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315
Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
V ++ G G+ FV F E V + + + G+ I+ R K + T
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373
Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
+ K +FV L + EE + + F +G + +
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
P+D+ T K +GF FITF E K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 42.0 bits (97), Expect = 8e-04
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
E ++F+ L + +T++DL+ FSK+G + + +D +T + +GF F+ F E K
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 155 MDQ 157
+
Sbjct: 460 YSE 462
Score = 35.0 bits (79), Expect = 0.10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 158 KEHKLNGKVIDPKR 171
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 241 EKKYHNVGLSKCEIKVAMSK 260
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 82.8 bits (203), Expect = 4e-16
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 72 KNEEDEGHSNSSPRHSEAATAQREEWK------MFIGGLSWDTTKKDLKDYFSKFGEVVD 125
+N +EG NSS + E + EE + +FI L++DTT++ LK+ FSK G V
Sbjct: 699 ENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKS 758
Query: 126 CTL---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------ID 168
C++ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 759 CSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVT 818
Query: 169 PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCF 227
R K + K+ KI V + +IRE F FGE++++ LP T RGF F
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878
Query: 228 ITFKEEEPVKKIMEKKYHNVGL 249
+ F ++ K+ H+ L
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHL 900
Score = 48.1 bits (113), Expect = 1e-05
Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 59 GSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFS 118
G+ + +G + E + E T + + G ++ T+K++ ++ +
Sbjct: 260 GAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTVKLR----GAPFNVTEKNVMEFLA 315
Query: 119 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 178
V ++ G G+ FV F E V + + + G+ I+ R K + T
Sbjct: 316 PLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTT 373
Query: 179 EPVKK-------------------------IFVGGLSPDTPEEKIREYFGGFGEVESIEL 213
+ K +FV L + EE + + F +G + +
Sbjct: 374 KGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHY 433
Query: 214 PMDNKTNKRRGFCFITFKEEEPVKK 238
P+D+ T K +GF FITF E K
Sbjct: 434 PIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 42.0 bits (97), Expect = 8e-04
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
E ++F+ L + +T++DL+ FSK+G + + +D +T + +GF F+ F E K
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459
Query: 155 MDQ 157
+
Sbjct: 460 YSE 462
Score = 35.0 bits (79), Expect = 0.10
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 158 KEHKLNGKVIDPKR 171
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 241 EKKYHNVGLSKCEIKVAMSK 260
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 76.3 bits (186), Expect = 4e-14
Identities = 57/176 (32%), Positives = 94/176 (53%), Gaps = 18/176 (10%)
Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
K+FVGGLS DT E+ + + F +G++ + + D +T + RGF F+TF+ + K M
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-M 65
Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFA-GRARGRGG-GPSQNWNQGYSNYWNQ 300
+ + +I+V + + + + G RGG A GR RGG G + +++G ++
Sbjct: 66 AMNGKSVDGRQIRVDQAGKSSDNRSR-GYRGGSAGGRGFFRGGRGRGRGFSRGGG---DR 121
Query: 301 GYGNYGYNSQGYGGYGG-YDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
GYG + S+ GGYGG DY Y++ G YS++ SG G +++SY Y
Sbjct: 122 GYGGNRFESRS-GGYGGSRDY--YSSRSQSGGYSDRSSG-------GSYRDSYDSY 167
Score = 62.8 bits (151), Expect = 5e-10
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
+E K+F+GGLS+DT ++ L+ FSK+G++ + + D T RSRGFGFV F E++D
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF---ENIDDA 60
Query: 155 MDQKEHKLNGKVIDPKRAK 173
D +NGK +D ++ +
Sbjct: 61 KDAM-MAMNGKSVDGRQIR 78
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 74.7 bits (182), Expect = 1e-13
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
K+FVGGL+ +T E+ + ++F FG + + + D +T + RGF FITF E M +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAM-R 65
Query: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSR-GGFAGRARGRG---GGPSQNWNQGYSNYW 298
+ L +I+V + + G+R GGF RGR GG Q + G Y+
Sbjct: 66 AMNGESLDGRQIRV-----DHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSG--RYY 118
Query: 299 NQGYGNYGYNSQGYG---GYGGYDYTGYNNYYGYGDY 332
+ G YGY GYG Y G + GY+ Y G G+Y
Sbjct: 119 DSRPGGYGY---GYGRSRDYNGRNQGGYDRYSG-GNY 151
Score = 59.3 bits (142), Expect = 5e-09
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
EE K+F+GGL+++T ++ L+D+FS FG + + + D T RSRGFGF+ F E
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 155 MDQKEHKLNGKVIDPKRAK 173
M +NG+ +D ++ +
Sbjct: 64 M----RAMNGESLDGRQIR 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,240,278
Number of Sequences: 37866
Number of extensions: 795994
Number of successful extensions: 13491
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 5995
Number of HSP's gapped (non-prelim): 4523
length of query: 355
length of database: 18,247,518
effective HSP length: 103
effective length of query: 252
effective length of database: 14,347,320
effective search space: 3615524640
effective search space used: 3615524640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.