Guide to the Human Genome
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Name: GAPDH Sequence: fasta or formatted (335aa) NCBI GI: 7669492
Description:

glyceraldehyde-3-phosphate dehydrogenase

Referenced in:

Glycolysis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         31           2
 C cysteine            0.9          3           1
 D aspartate           6.0         20           2
 E glutamate           3.9         13           1
 F phenylalanine       4.2         14           1
 G glycine             9.9         33           2
 H histidine           3.0         10           1
 I isoleucine          6.6         22           2
 K lysine              7.8         26           2
 L leucine             5.7         19           1
 M methionine          3.0         10           1
 N asparagine          5.7         19           1
 P proline             3.6         12           1
 Q glutamine           2.1          7           1
 R arginine            3.0         10           1
 S serine              6.3         21           2
 T threonine           6.3         21           2
 V valine              9.6         32           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glyceraldehyde-3-phosphate dehydrogenase 
GAPDHS                0.676   glyceraldehyde-3-phosphate dehydrogenase, spermatogen...
LOC100134235          0.080   PREDICTED: similar to hCG1642820 
DNAH7                 0.011   dynein, axonemal, heavy chain 7 
TCN1                  0.009   transcobalamin I precursor 
ZBTB37                0.008   zinc finger and BTB domain containing 37 isoform a ...
MUC12                 0.006   PREDICTED: mucin 12 
MUC12                 0.005   PREDICTED: mucin 12 
CCDC52                0.005   coiled-coil domain containing 52 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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