Guide to the Human Genome
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Name: GAPDHS Sequence: fasta or formatted (408aa) NCBI GI: 7657116
Description:

glyceraldehyde-3-phosphate dehydrogenase, spermatogenic

Referenced in:

Glycolysis
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         36           3
 C cysteine            1.5          6           1
 D aspartate           4.9         20           1
 E glutamate           5.1         21           2
 F phenylalanine       2.7         11           1
 G glycine             6.4         26           1
 H histidine           2.2          9           1
 I isoleucine          5.1         21           2
 K lysine              5.6         23           1
 L leucine             5.4         22           2
 M methionine          2.9         12           1
 N asparagine          3.7         15           1
 P proline            10.0         41           5
 Q glutamine           2.9         12           1
 R arginine            5.1         21           1
 S serine              6.4         26           2
 T threonine           5.6         23           2
 V valine             11.0         45           2
 W tryptophan          0.7          3           1
 Y tyrosine            3.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glyceraldehyde-3-phosphate dehydrogenase, spermatogen... 
GAPDH                 0.545   glyceraldehyde-3-phosphate dehydrogenase 
LOC100134235          0.040   PREDICTED: similar to hCG1642820 
ZNF219                0.032   zinc finger protein 219 
ZNF219                0.032   zinc finger protein 219 
ZNF219                0.032   zinc finger protein 219 
SETD1B                0.031   SET domain containing 1B 
LOC100291797          0.029   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.029   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.029   PREDICTED: hypothetical protein XP_002342316 
ENAH                  0.029   enabled homolog isoform a 
ENAH                  0.029   enabled homolog isoform b 
BRD4                  0.029   bromodomain-containing protein 4 isoform long 
ACR                   0.027   acrosin precursor 
PRR12                 0.027   proline rich 12 
LOC645529             0.027   PREDICTED: similar to Putative acrosin-like proteas...
HTT                   0.026   huntingtin 
DIAPH1                0.026   diaphanous 1 isoform 2 
DIAPH1                0.026   diaphanous 1 isoform 1 
FMNL1                 0.026   formin-like 1 
TTN                   0.025   titin isoform N2-A 
WAS                   0.025   Wiskott-Aldrich syndrome protein 
FMNL2                 0.025   formin-like 2 
CPSF7                 0.025   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.025   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
CPSF7                 0.025   pre-mRNA cleavage factor I, 59 kDa subunit isoform ...
MYST3                 0.025   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.025   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.025   MYST histone acetyltransferase (monocytic leukemia)...
USP51                 0.025   ubiquitin specific protease 51 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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