Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PHF16 Sequence: fasta or formatted (823aa) NCBI GI: 7662006
Description:

PHD finger protein 16

Referenced in:

PHD Finger Proteins

Other entries for this name:
alt mRNA [823aa] PHD finger protein 16
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         36           2
 C cysteine            3.5         29           1
 D aspartate           5.1         42           2
 E glutamate           8.9         73           3
 F phenylalanine       2.8         23           1
 G glycine             4.4         36           2
 H histidine           3.8         31           2
 I isoleucine          4.1         34           2
 K lysine              7.8         64           2
 L leucine             7.9         65           2
 M methionine          2.7         22           1
 N asparagine          4.1         34           2
 P proline             6.4         53           3
 Q glutamine           4.1         34           2
 R arginine            5.7         47           2
 S serine             10.8         89           4
 T threonine           4.1         34           2
 V valine              5.2         43           1
 W tryptophan          1.5         12           1
 Y tyrosine            2.7         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PHD finger protein 16 
PHF16                 1.000   PHD finger protein 16 
PHF17                 0.391   PHD finger protein 17 long isoform 
PHF17                 0.360   PHD finger protein 17 short isoform 
PHF15                 0.347   PHD finger protein 15 
BRPF1                 0.119   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.119   bromodomain and PHD finger-containing protein 1 isof...
BRD1                  0.115   bromodomain containing protein 1 
BRPF3                 0.110   bromodomain and PHD finger containing, 3 
MLLT10                0.068   myeloid/lymphoid or mixed-lineage leukemia transloca...
MLLT10                0.068   myeloid/lymphoid or mixed-lineage leukemia translocat...
MLLT6                 0.067   myeloid/lymphoid or mixed-lineage leukemia (trithora...
PHF14                 0.061   PHD finger protein 14 isoform 2 
PHF14                 0.061   PHD finger protein 14 isoform 1 
KDM4B                 0.047   jumonji domain containing 2B 
KDM4C                 0.046   jumonji domain containing 2C isoform 2 
KDM4C                 0.046   jumonji domain containing 2C isoform 1 
KDM4A                 0.041   jumonji domain containing 2A 
KDM4C                 0.026   jumonji domain containing 2C isoform 3 
KDM4C                 0.026   jumonji domain containing 2C isoform 4 
PHF1                  0.017   PHD finger protein 1 isoform a 
PHF1                  0.017   PHD finger protein 1 isoform b 
MLL4                  0.016   myeloid/lymphoid or mixed-lineage leukemia 4 
MTF2                  0.016   metal response element binding transcription factor 2...
WHSC1L1               0.013   WHSC1L1 protein isoform long 
PHF10                 0.013   PHD finger protein 10 isoform b 
PHF10                 0.013   PHD finger protein 10 isoform a 
WHSC1                 0.012   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.012   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.012   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press