TRPV1 35506

Name: TRPV1	Sequence: fasta or formatted (839aa)		NCBI GI: 74315348
Description: transient receptor potential cation channel, subfamily V, member 1		Referenced in: Calcium and TRP Cation Channels
Other entries for this name: alt mRNA [839aa] transient receptor potential cation channel, subfamily V, member 1 alt mRNA [839aa] transient receptor potential cation channel, subfamily V, member 1 alt mRNA [839aa] transient receptor potential cation channel, subfamily V, member 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 56 3 C cysteine 1.9 16 1 D aspartate 5.5 46 2 E glutamate 5.8 49 2 F phenylalanine 5.6 47 3 G glycine 5.7 48 2 H histidine 1.5 13 1 I isoleucine 4.5 38 2 K lysine 6.0 50 2 L leucine 12.2 102 3 M methionine 2.7 23 1 N asparagine 3.9 33 2 P proline 4.5 38 3 Q glutamine 3.3 28 2 R arginine 5.2 44 2 S serine 7.3 61 3 T threonine 6.6 55 2 V valine 5.7 48 2 W tryptophan 1.3 11 1 Y tyrosine 3.9 33 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 transient receptor potential cation channel, subfami... TRPV1 1.000 transient receptor potential cation channel, subfami... TRPV1 1.000 transient receptor potential cation channel, subfami... TRPV1 1.000 transient receptor potential cation channel, subfami... TRPV4 0.397 transient receptor potential cation channel, subfami... TRPV2 0.364 transient receptor potential cation channel, subfami... TRPV3 0.311 transient receptor potential cation channel, subfami... TRPV4 0.209 transient receptor potential cation channel, subfami... TRPV6 0.130 transient receptor potential cation channel, subfami... TRPV5 0.129 transient receptor potential cation channel, subfami... ANK3 0.017 ankyrin 3 isoform 1 TRPC5 0.016 transient receptor potential cation channel, subfamil... TRPC4 0.015 transient receptor potential cation channel, subfam... TRPC4 0.015 transient receptor potential cation channel, subfam... TRPC4 0.015 transient receptor potential cation channel, subfam... TRPC4 0.015 transient receptor potential cation channel, subfam... TRPC4 0.015 transient receptor potential cation channel, subfamil... ANKRD27 0.015 ankyrin repeat domain 27 (VPS9 domain) TRPA1 0.014 ankyrin-like protein 1 ANKRD54 0.014 ankyrin repeat domain 54 ANK2 0.013 ankyrin 2 isoform 3 ANK2 0.013 ankyrin 2 isoform 2 ANK2 0.013 ankyrin 2 isoform 1 TRPC1 0.013 transient receptor potential cation channel, subfamil... ANK1 0.013 ankyrin 1 isoform 9 ANK1 0.013 ankyrin 1 isoform 1 ANK1 0.013 ankyrin 1 isoform 3 ANK1 0.013 ankyrin 1 isoform 2 ANK1 0.013 ankyrin 1 isoform 4 TRPC4 0.013 transient receptor potential cation channel, subfam... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.