Guide to the Human Genome
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Name: VN1R1 Sequence: fasta or formatted (353aa) NCBI GI: 10190668
Description:

vomeronasal 1 receptor 1

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         18           2
 C cysteine            3.4         12           2
 D aspartate           2.8         10           1
 E glutamate           1.1          4           1
 F phenylalanine       9.1         32           2
 G glycine             4.8         17           1
 H histidine           3.1         11           1
 I isoleucine          4.8         17           1
 K lysine              4.2         15           1
 L leucine            12.7         45           3
 M methionine          3.7         13           1
 N asparagine          5.4         19           2
 P proline             4.2         15           1
 Q glutamine           3.1         11           2
 R arginine            4.2         15           1
 S serine             10.5         37           2
 T threonine           5.4         19           2
 V valine              7.4         26           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.4         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vomeronasal 1 receptor 1 
VN1R2                 0.307   vomeronasal 1 receptor 2 
VN1R4                 0.307   vomeronasal 1 receptor 4 
LOC100129315          0.110   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.110   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.110   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100131688          0.066   PREDICTED: similar to hCG2041551 
LOC100131688          0.066   PREDICTED: similar to hCG2041551 
VN1R5                 0.057   vomeronasal 1 receptor 5 
FKSG83                0.050   FKSG83 
LOC100294489          0.049   PREDICTED: similar to hCG1817096 
LOC100133928          0.039   PREDICTED: similar to vomeronasal 1 receptor, A5 [H...
TAS2R14               0.036   taste receptor, type 2, member 14 
TAS2R10               0.026   taste receptor, type 2, member 10 
TRHR                  0.023   thyrotropin-releasing hormone receptor 
TAS2R1                0.020   taste receptor T2R1 
LOC100129126          0.019   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.019   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.019   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.019   PREDICTED: hypothetical LOC100129126 
TAS2R16               0.017   taste receptor T2R16 
TAS2R9                0.016   taste receptor, type 2, member 9 
GPR37                 0.014   G protein-coupled receptor 37 
SLC44A3               0.010   solute carrier family 44, member 3 isoform 1 
SLC44A3               0.010   solute carrier family 44, member 3 isoform 2 
PPYR1                 0.010   pancreatic polypeptide receptor 1 
TAS2R19               0.010   taste receptor, type 2, member 19 
PORCN                 0.009   porcupine isoform B 
PORCN                 0.007   porcupine isoform E 
PORCN                 0.007   porcupine isoform D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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