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Search of human proteins with 7110679
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7110679 tetratricopeptide repeat domain 33 [Homo sapiens]
(262 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7110679 tetratricopeptide repeat domain 33 [Homo sapiens] 522 e-148
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 57 2e-08
gi|24308141 small glutamine-rich tetratricopeptide repeat (TPR)-... 50 3e-06
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 50 3e-06
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 47 2e-05
gi|83415184 transmembrane and tetratricopeptide repeat containin... 45 6e-05
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens] 44 1e-04
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens] 44 1e-04
gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens] 43 2e-04
gi|5453958 protein phosphatase 5, catalytic subunit [Homo sapiens] 41 0.001
gi|19923193 heat shock 70kD protein binding protein [Homo sapiens] 41 0.001
gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled... 40 0.003
gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa p... 39 0.004
gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo sapi... 39 0.004
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi... 39 0.004
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi... 39 0.004
gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens] 39 0.006
gi|118766328 transmembrane and tetratricopeptide repeat containi... 38 0.008
gi|118766330 transmembrane and tetratricopeptide repeat containi... 38 0.008
gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled... 38 0.008
gi|27262638 sperm associated antigen 1 [Homo sapiens] 37 0.013
gi|27262636 sperm associated antigen 1 [Homo sapiens] 37 0.013
gi|21361356 translocase of outer mitochondrial membrane 34 [Homo... 37 0.013
gi|42476022 tetratricopeptide repeat domain 27 [Homo sapiens] 37 0.013
gi|115529449 upstream binding transcription factor, RNA polymera... 36 0.030
gi|115529451 upstream binding transcription factor, RNA polymera... 36 0.030
gi|7657671 upstream binding transcription factor, RNA polymerase... 36 0.030
gi|225735593 RNA polymerase II associated protein 3 isoform 2 [H... 35 0.051
gi|225735591 RNA polymerase II associated protein 3 isoform 1 [H... 35 0.051
gi|196259776 peroxisomal biogenesis factor 5 isoform d [Homo sap... 35 0.051
>gi|7110679 tetratricopeptide repeat domain 33 [Homo sapiens]
Length = 262
Score = 522 bits (1344), Expect = e-148
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MASFGWKRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSK 60
MASFGWKRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSK
Sbjct: 1 MASFGWKRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSK 60
Query: 61 QLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAV 120
QLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAV
Sbjct: 61 QLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAV 120
Query: 121 QQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQKV 180
QQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQKV
Sbjct: 121 QQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQKV 180
Query: 181 AQRIKKSEAPAEVTHFSPKSIPDYDFESDEIVAVCAAIAEKEKTVSANKTMVIVSASGAI 240
AQRIKKSEAPAEVTHFSPKSIPDYDFESDEIVAVCAAIAEKEKTVSANKTMVIVSASGAI
Sbjct: 181 AQRIKKSEAPAEVTHFSPKSIPDYDFESDEIVAVCAAIAEKEKTVSANKTMVIVSASGAI 240
Query: 241 ETVTEKEDGATPPDGSVFIKAR 262
ETVTEKEDGATPPDGSVFIKAR
Sbjct: 241 ETVTEKEDGATPPDGSVFIKAR 262
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 56.6 bits (135), Expect = 2e-08
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 58 KSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAE 117
++ QL+ EG L ++ A+ K++EA++L PND LY +SQ+ +L A+H AE
Sbjct: 242 RASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAE 301
Query: 118 MAVQQNPHSWESWQTLGRAQLGLGEIILAIRSF 150
+A + P +++ +A LG++ A+R F
Sbjct: 302 IACKLRPMGFKAHFRKAQALATLGKVEEALREF 334
>gi|24308141 small glutamine-rich tetratricopeptide repeat
(TPR)-containing, beta [Homo sapiens]
Length = 304
Score = 49.7 bits (117), Expect = 3e-06
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 58 KSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAE 117
K+ QLKDEG + + + Y A+ + +A++L PN+A Y ++ L A+ E
Sbjct: 84 KADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCE 143
Query: 118 MAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWA 171
A+ + +++ +G A L + A+ S+Q AL + P N + +K +L A
Sbjct: 144 KAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPEN-DSYKSNLKIA 196
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 49.7 bits (117), Expect = 3e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 58 KSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAE 117
++ QL+ EG L ++ A+ K++EA++L PND LY +SQ+ +L A+H AE
Sbjct: 242 RASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAE 301
Query: 118 MAVQQNP 124
+A + P
Sbjct: 302 IACKLRP 308
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 47.0 bits (110), Expect = 2e-05
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 46 RRKEILLEGCAEKS-------KQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEM 98
RR ++L G EK ++L + SL ++ A+ + D+AL+L P+D +L +
Sbjct: 177 RRVNVVLSGLLEKCFPAECRLRRLAGQARSLQRQQQPEAALLRCDQALELAPDDNSLLLL 236
Query: 99 KSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYP 158
++++ +++ A+ A A Q P + Q +A GLG ++ F L+
Sbjct: 237 RAELYLTMKNYEQALQDASAACQNEPLLIKGHQVKAQALSGLGRSKEVLKEF---LYCLA 293
Query: 159 MNPE 162
+NPE
Sbjct: 294 LNPE 297
>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
[Homo sapiens]
Length = 774
Score = 45.1 bits (105), Expect = 6e-05
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 38 GNWLHAIKRRKEILLE--GCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPND--- 92
G A K I+ E GC E + L A ++ + + +A+ D+ALQL P D
Sbjct: 623 GQTKEAEKMTNHIVSEETGCLECYRLLS---AIYSKQENHDKALDAIDKALQLKPKDPKV 679
Query: 93 -ATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQ 151
+ L+ K L + + A + +AVQ NP ++W +G Q G+ + A ++
Sbjct: 680 ISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYVSARAYYE 739
Query: 152 VALHIYPMNPEIWKEDLSWARTLQEQQKVAQRIKKSE 188
AL + P + ++ KE+L+ L +K Q +++ +
Sbjct: 740 RALQLVP-DSKLLKENLA---KLDRLEKRLQEVREKD 772
Score = 34.3 bits (77), Expect = 0.11
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 38 GNWLHAIKRRKEI--LLEGCAEKSKQLKDEGASLA----ENKRYREAIQKWDEALQLTPN 91
GN L + ++++E LL+ + + D +SLA E +R++EA + + ++ P+
Sbjct: 447 GNLLKSQEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPD 506
Query: 92 DATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQ 151
+ L+ L+ AV + A++ +P + LGR LGE +A ++
Sbjct: 507 SSDLHNNYGVFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYK 566
Query: 152 VALHI 156
AL +
Sbjct: 567 RALQV 571
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/111 (25%), Positives = 45/111 (40%)
Query: 56 AEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHA 115
A K++ L GA RY EA+Q + EA L P+ L +QVL + + A
Sbjct: 572 AHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKM 631
Query: 116 AEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKE 166
V + E ++ L A+ + AL + P +P++ E
Sbjct: 632 TNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKALQLKPKDPKVISE 682
>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
Length = 1036
Score = 44.3 bits (103), Expect = 1e-04
Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 33 VDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPND 92
+ ++GN A++ ++ L E E + + + L + + +EA+ + EA++++P
Sbjct: 326 IKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 384
Query: 93 ATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQV 152
A Y L + ++ A+ A+Q NP ++ L G I AI S++
Sbjct: 385 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 444
Query: 153 ALHIYPMNPEIW-------KEDLSWARTLQEQQK----VAQRIKKSEAPAEVTHFSPKSI 201
AL + P P+ + + W + +K VA +++K+ P+ H S
Sbjct: 445 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYP 504
Query: 202 PDYDFESDEIVAVCAAIAEKEKTVSANKTMVI 233
+ F AIAE+ + +K V+
Sbjct: 505 LSHGFRK--------AIAERHGNLCLDKINVL 528
Score = 33.1 bits (74), Expect = 0.25
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 78 AIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQ 137
A+Q + ALQ P+ + +L +L + A A++ P+ +W LG
Sbjct: 132 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 191
Query: 138 LGLGEIILAIRSFQVALHIYP 158
GEI LAI F+ A+ + P
Sbjct: 192 NAQGEIWLAIHHFEKAVTLDP 212
Score = 29.3 bits (64), Expect = 3.6
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 64 DEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQN 123
D G L R EA + +A++ PN A + V + E++ A+H E AV +
Sbjct: 152 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 211
Query: 124 PHSWESWQTLGRAQLGLGEIILAIRSFQVALHIY 157
P+ + A + LG ++ R F A+ Y
Sbjct: 212 PNFLD-------AYINLGNVLKEARIFDRAVAAY 238
Score = 28.9 bits (63), Expect = 4.8
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 78 AIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQ 137
AI + A++L P+ Y + L + A A++ P +S L +
Sbjct: 268 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 327
Query: 138 LGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQKVAQRI 184
G I A+R ++ AL ++ PE + A LQ+Q K+ + +
Sbjct: 328 REQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEAL 371
>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
Length = 1046
Score = 44.3 bits (103), Expect = 1e-04
Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 33 VDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPND 92
+ ++GN A++ ++ L E E + + + L + + +EA+ + EA++++P
Sbjct: 336 IKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 394
Query: 93 ATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQV 152
A Y L + ++ A+ A+Q NP ++ L G I AI S++
Sbjct: 395 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 454
Query: 153 ALHIYPMNPEIW-------KEDLSWARTLQEQQK----VAQRIKKSEAPAEVTHFSPKSI 201
AL + P P+ + + W + +K VA +++K+ P+ H S
Sbjct: 455 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYP 514
Query: 202 PDYDFESDEIVAVCAAIAEKEKTVSANKTMVI 233
+ F AIAE+ + +K V+
Sbjct: 515 LSHGFRK--------AIAERHGNLCLDKINVL 538
Score = 33.1 bits (74), Expect = 0.25
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 78 AIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQ 137
A+Q + ALQ P+ + +L +L + A A++ P+ +W LG
Sbjct: 142 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 201
Query: 138 LGLGEIILAIRSFQVALHIYP 158
GEI LAI F+ A+ + P
Sbjct: 202 NAQGEIWLAIHHFEKAVTLDP 222
Score = 29.3 bits (64), Expect = 3.6
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 64 DEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQN 123
D G L R EA + +A++ PN A + V + E++ A+H E AV +
Sbjct: 162 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 221
Query: 124 PHSWESWQTLGRAQLGLGEIILAIRSFQVALHIY 157
P+ + A + LG ++ R F A+ Y
Sbjct: 222 PNFLD-------AYINLGNVLKEARIFDRAVAAY 248
Score = 28.9 bits (63), Expect = 4.8
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 78 AIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQ 137
AI + A++L P+ Y + L + A A++ P +S L +
Sbjct: 278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 337
Query: 138 LGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQKVAQRI 184
G I A+R ++ AL ++ PE + A LQ+Q K+ + +
Sbjct: 338 REQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEAL 381
>gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens]
Length = 519
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/104 (30%), Positives = 50/104 (48%)
Query: 51 LLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMF 110
LL ++S++L G S A+N Y EA+ + +AL+L P D L+ +S L +
Sbjct: 297 LLAAALQQSQELAKLGTSFAQNGFYHEAVVLFTQALKLNPQDHRLFGNRSFCHERLGQPA 356
Query: 111 PAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVAL 154
A+ A++A+ P LG+A +GL A FQ L
Sbjct: 357 WALADAQVALTLRPGWPRGLFRLGKALMGLQRFREAAAVFQETL 400
>gi|5453958 protein phosphatase 5, catalytic subunit [Homo sapiens]
Length = 499
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/112 (20%), Positives = 54/112 (48%)
Query: 47 RKEILLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSL 106
R E +G +++++LK + + K Y AI+ + +A++L P++A Y +S +
Sbjct: 16 RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT 75
Query: 107 HEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYP 158
A+ A A++ + + + + + LG+ A+R ++ + + P
Sbjct: 76 ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 127
>gi|19923193 heat shock 70kD protein binding protein [Homo sapiens]
Length = 369
Score = 40.8 bits (94), Expect = 0.001
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 35/206 (16%)
Query: 6 WKRKIGEKVSKVTSQQFEAEAADEK---------DVVDNDEGNWLHAIKRRKEILLEGCA 56
W +G KV T + E E+ D+ ++ + ++ KE ++E
Sbjct: 34 WVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLKADEPSSEESDLEIDKEGVIEPDT 93
Query: 57 EKSKQLKDEGASLAENK------------------RYREAIQKWDEALQLTPNDATLYEM 98
+ +++ DE A + E ++AI + +A++L P A LY
Sbjct: 94 DAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAK 153
Query: 99 KSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYP 158
++ V + L + A+ + A++ NP S + ++ G+A LG A +A +
Sbjct: 154 RASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKL-- 211
Query: 159 MNPEIWKEDLSWARTLQEQQKVAQRI 184
+ ED S L+E Q AQ+I
Sbjct: 212 ----DYDEDAS--AMLKEVQPRAQKI 231
>gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 1 isoform 1 [Homo sapiens]
Length = 1861
Score = 39.7 bits (91), Expect = 0.003
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 60 KQLKDEGASLAENKRYREAIQKWDEALQLTPNDA-------------TLYEMKSQVLMSL 106
++L +EG + + + +EA Q++ AL+ P + +LY S+
Sbjct: 1290 QKLMEEGNVMYKKGKMKEAAQRYQYALRKFPREGFGEDMRPFNELRVSLYLNLSRCRRKT 1349
Query: 107 HEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKE 166
++ A A A++ P S+E++ RA+ + + A+ Q A+ + P N E+
Sbjct: 1350 NDFGMAEEFASKALELKPKSYEAFYARARAKRNSRQFVAALADLQEAVKLCPTNQEV--- 1406
Query: 167 DLSWARTLQEQQKVAQRIKKSEAPAEVTHFSPKSIPDYDFESDE 210
R L ++ +++++S+ + P P D E++E
Sbjct: 1407 ----KRLLARVEEECKQLQRSQQQKQQ---GPLPAPLNDSENEE 1443
>gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa
protein [Homo sapiens]
Length = 406
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 17/148 (11%)
Query: 35 NDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKRY--------------REAIQ 80
N E WL A+K E E++++L + S A R R A
Sbjct: 105 NSEEIWLAAVKLESE---NDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQD 161
Query: 81 KWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGL 140
+EAL+ + L+ MK Q+ M A A +++ PHS W L R + +
Sbjct: 162 LCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKI 221
Query: 141 GEIILAIRSFQVALHIYPMNPEIWKEDL 168
G++ A + + P NP +W E +
Sbjct: 222 GQLTRARAILEKSRLKNPKNPGLWLESV 249
>gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo
sapiens]
Length = 941
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 17/148 (11%)
Query: 35 NDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAENKRY--------------REAIQ 80
N E WL A+K E E++++L + S A R R A
Sbjct: 640 NSEEIWLAAVKLESE---NDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQD 696
Query: 81 KWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGL 140
+EAL+ + L+ MK Q+ M A A +++ PHS W L R + +
Sbjct: 697 LCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKI 756
Query: 141 GEIILAIRSFQVALHIYPMNPEIWKEDL 168
G++ A + + P NP +W E +
Sbjct: 757 GQLTRARAILEKSRLKNPKNPGLWLESV 784
>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
sapiens]
Length = 830
Score = 39.3 bits (90), Expect = 0.004
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 78 AIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQ 137
AI+ + A+Q+ PN A Y + + E+ A+ A++ NP + +W LG
Sbjct: 592 AIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 651
Query: 138 LGLGEIILAIRSFQVALHIYPMN 160
+ LA FQ AL I P +
Sbjct: 652 YKQEKFSLAEMHFQKALDINPQS 674
Score = 29.3 bits (64), Expect = 3.6
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 69 LAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNP 124
L N++Y+ A+Q+ +E Q+ P ++ +Y + +V L + A+ A+ +P
Sbjct: 719 LFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDP 774
>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
sapiens]
Length = 824
Score = 39.3 bits (90), Expect = 0.004
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 78 AIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQ 137
AI+ + A+Q+ PN A Y + + E+ A+ A++ NP + +W LG
Sbjct: 586 AIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 645
Query: 138 LGLGEIILAIRSFQVALHIYPMN 160
+ LA FQ AL I P +
Sbjct: 646 YKQEKFSLAEMHFQKALDINPQS 668
Score = 29.3 bits (64), Expect = 3.6
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 69 LAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNP 124
L N++Y+ A+Q+ +E Q+ P ++ +Y + +V L + A+ A+ +P
Sbjct: 713 LFANEKYKSALQELEELKQIVPKESLVYFLIGKVYKKLGQTHLALMNFSWAMDLDP 768
>gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens]
Length = 705
Score = 38.5 bits (88), Expect = 0.006
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 45 KRRKE--ILLEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQV 102
KRR+E +L + EK + EG Y AI ++ E L+ + LY ++Q
Sbjct: 97 KRRRENKVLADALKEKGNEAFAEG-------NYETAILRYSEGLEKLKDMKVLYTNRAQA 149
Query: 103 LMSLHEMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPE 162
M L + A+ E A++ + +++ +G+A L L ++ ++ L I NP+
Sbjct: 150 YMKLEDYEKALVDCEWALKCDEKCTKAYFHMGKANLALKNYSVSRECYKKILEI---NPK 206
Query: 163 IWKEDLSWARTLQEQQKVAQRIKKS 187
+ + + + Q+K + K++
Sbjct: 207 LQTQVKGYLNQVDLQEKADLQEKEA 231
>gi|118766328 transmembrane and tetratricopeptide repeat containing
4 isoform 2 [Homo sapiens]
Length = 741
Score = 38.1 bits (87), Expect = 0.008
Identities = 27/103 (26%), Positives = 44/103 (42%)
Query: 52 LEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFP 111
L C +K + G +LA+ AI+ + EA++L P +L +E+
Sbjct: 475 LSVCPLNAKVHYNIGKNLADKGNQTAAIRYYREAVRLNPKYVHAMNNLGNILKERNELQE 534
Query: 112 AVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVAL 154
A +AVQ P +W LG Q L A +S++ A+
Sbjct: 535 AEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEAAEQSYRTAI 577
>gi|118766330 transmembrane and tetratricopeptide repeat containing
4 isoform 1 [Homo sapiens]
Length = 760
Score = 38.1 bits (87), Expect = 0.008
Identities = 27/103 (26%), Positives = 44/103 (42%)
Query: 52 LEGCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFP 111
L C +K + G +LA+ AI+ + EA++L P +L +E+
Sbjct: 494 LSVCPLNAKVHYNIGKNLADKGNQTAAIRYYREAVRLNPKYVHAMNNLGNILKERNELQE 553
Query: 112 AVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVAL 154
A +AVQ P +W LG Q L A +S++ A+
Sbjct: 554 AEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEAAEQSYRTAI 596
>gi|157739945 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 2 [Homo sapiens]
Length = 1990
Score = 38.1 bits (87), Expect = 0.008
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 61 QLKDEGASLAENKRYREAIQKWDEALQLTPNDA------TLYEMKSQVLMSL-------H 107
+L +EG + + +EA Q++ AL+ P + T E+K +L++L +
Sbjct: 1246 KLMEEGDMFYKKGKVKEAAQRYQYALKKFPREGFGEDLKTFRELKVSLLLNLSRCRRKMN 1305
Query: 108 EMFPAVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKED 167
+ A A A++ P S+E++ RA+ + A+ A+ + P N EI +
Sbjct: 1306 DFGMAEEFATKALELKPKSYEAYYARARAKRSSRQFAAALEDLNEAIKLCPNNREIQRLL 1365
Query: 168 LSWARTLQEQQKVAQ 182
L ++ Q+ Q
Sbjct: 1366 LRVEEECRQMQQPQQ 1380
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 37.4 bits (85), Expect = 0.013
Identities = 28/129 (21%), Positives = 54/129 (41%)
Query: 60 KQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMA 119
K LK+EG +K Y++A+ K+ E L++ + +Y ++ + L + A + A
Sbjct: 624 KALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQA 683
Query: 120 VQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQK 179
+Q + +++ A GL ++ + + P E E R L + K
Sbjct: 684 LQLADGNVKAFYRRALAHKGLKNYQKSLIDLNKVILLDPSIIEAKMELEEVTRLLNLKDK 743
Query: 180 VAQRIKKSE 188
A K+ E
Sbjct: 744 TAPFNKEKE 752
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 37.4 bits (85), Expect = 0.013
Identities = 28/129 (21%), Positives = 54/129 (41%)
Query: 60 KQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMA 119
K LK+EG +K Y++A+ K+ E L++ + +Y ++ + L + A + A
Sbjct: 624 KALKEEGNQCVNDKNYKDALSKYSECLKINNKECAIYTNRALCYLKLCQFEEAKQDCDQA 683
Query: 120 VQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKEDLSWARTLQEQQK 179
+Q + +++ A GL ++ + + P E E R L + K
Sbjct: 684 LQLADGNVKAFYRRALAHKGLKNYQKSLIDLNKVILLDPSIIEAKMELEEVTRLLNLKDK 743
Query: 180 VAQRIKKSE 188
A K+ E
Sbjct: 744 TAPFNKEKE 752
>gi|21361356 translocase of outer mitochondrial membrane 34 [Homo
sapiens]
Length = 309
Score = 37.4 bits (85), Expect = 0.013
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 54 GCAEKSKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAV 113
G EK++ LK+EG L + +++AI+K+ E+L + ++ Y ++ + L + AV
Sbjct: 188 GDVEKARVLKEEGNELVKKGNHKKAIEKYSESLLCSNLESATYSNRALCYLVLKQYTEAV 247
Query: 114 HAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMN 160
A++ + + +++ +A L + + L I P N
Sbjct: 248 KDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEPRN 294
>gi|42476022 tetratricopeptide repeat domain 27 [Homo sapiens]
Length = 843
Score = 37.4 bits (85), Expect = 0.013
Identities = 19/94 (20%), Positives = 46/94 (48%)
Query: 72 NKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQ 131
NK ++E ++ ++ ++++ P ++ ++L + + A + V P + E+W
Sbjct: 540 NKEFQECVECFERSVKINPMQLGVWFSLGCAYLALEDYQGSAKAFQRCVTLEPDNAEAWN 599
Query: 132 TLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWK 165
L + + L + + A R+ Q AL + +IW+
Sbjct: 600 NLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWE 633
Score = 29.6 bits (65), Expect = 2.8
Identities = 16/82 (19%), Positives = 36/82 (43%)
Query: 75 YREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQTLG 134
Y+ + + + + L P++A + S + L + A + A++ N W+ W+
Sbjct: 577 YQGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNYEHWQIWENYI 636
Query: 135 RAQLGLGEIILAIRSFQVALHI 156
+GE AI+++ L +
Sbjct: 637 LTSTDVGEFSEAIKAYHRLLDL 658
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 36.2 bits (82), Expect = 0.030
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 15/199 (7%)
Query: 7 KRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEG 66
+R +GE+ +++ A +K + +G KR + EK +QL++E
Sbjct: 334 QRVLGEEKMLNINKKQATSPASKKPAQEGGKGG-SEKPKRPVSAMFIFSEEKRRQLQEER 392
Query: 67 ASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMA-VQQNP- 124
L+E++ R + W++ L+ Y+ + L + E P E + ++P
Sbjct: 393 PELSESELTRLLARMWND---LSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPK 449
Query: 125 HSWESWQTLGRAQLGLGEIILAIRSFQV-ALHIYPM--NPEIWKEDLSWARTLQEQQKVA 181
+ E WQ Q +G+ + ++ +V AL M N KE L W + E QK
Sbjct: 450 RAEEIWQ-----QSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRY 504
Query: 182 QR-IKKSEAPAEVTHFSPK 199
+R + + AP T+ S K
Sbjct: 505 ERELSEMRAPPAATNSSKK 523
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 36.2 bits (82), Expect = 0.030
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 15/199 (7%)
Query: 7 KRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEG 66
+R +GE+ +++ A +K + +G KR + EK +QL++E
Sbjct: 334 QRVLGEEKMLNINKKQATSPASKKPAQEGGKGG-SEKPKRPVSAMFIFSEEKRRQLQEER 392
Query: 67 ASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMA-VQQNP- 124
L+E++ R + W++ L+ Y+ + L + E P E + ++P
Sbjct: 393 PELSESELTRLLARMWND---LSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPK 449
Query: 125 HSWESWQTLGRAQLGLGEIILAIRSFQV-ALHIYPM--NPEIWKEDLSWARTLQEQQKVA 181
+ E WQ Q +G+ + ++ +V AL M N KE L W + E QK
Sbjct: 450 RAEEIWQ-----QSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRY 504
Query: 182 QR-IKKSEAPAEVTHFSPK 199
+R + + AP T+ S K
Sbjct: 505 ERELSEMRAPPAATNSSKK 523
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 36.2 bits (82), Expect = 0.030
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 15/199 (7%)
Query: 7 KRKIGEKVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEG 66
+R +GE+ +++ A +K + +G KR + EK +QL++E
Sbjct: 371 QRVLGEEKMLNINKKQATSPASKKPAQEGGKGG-SEKPKRPVSAMFIFSEEKRRQLQEER 429
Query: 67 ASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMA-VQQNP- 124
L+E++ R + W++ L+ Y+ + L + E P E + ++P
Sbjct: 430 PELSESELTRLLARMWND---LSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPK 486
Query: 125 HSWESWQTLGRAQLGLGEIILAIRSFQV-ALHIYPM--NPEIWKEDLSWARTLQEQQKVA 181
+ E WQ Q +G+ + ++ +V AL M N KE L W + E QK
Sbjct: 487 RAEEIWQ-----QSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRY 541
Query: 182 QR-IKKSEAPAEVTHFSPK 199
+R + + AP T+ S K
Sbjct: 542 ERELSEMRAPPAATNSSKK 560
>gi|225735593 RNA polymerase II associated protein 3 isoform 2 [Homo
sapiens]
Length = 631
Score = 35.4 bits (80), Expect = 0.051
Identities = 35/168 (20%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 8 RKIGEKVSKVTSQQFEAEAADEKDV------VDNDEGNWLHAIKRRKEILLEGC---AEK 58
+K E+ +K + ++ EA + DV +D D+ ++ + E +G ++K
Sbjct: 74 KKTREENTKNRIKSYDYEAWAKLDVDRILDELDKDDSTH-ESLSQESESEEDGIHVDSQK 132
Query: 59 SKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEM 118
+ LK++G + +Y EAI + + + P + L ++ L + A +
Sbjct: 133 ALVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNL 192
Query: 119 AVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKE 166
AV N +++ G A+ L ++ A + ++ L + P N E E
Sbjct: 193 AVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNE 240
Score = 30.0 bits (66), Expect = 2.1
Identities = 27/150 (18%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 13 KVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAEN 72
K+S+ + + + + V+ + EG RK+I + +++ KD G +
Sbjct: 243 KISQALASKENSYPKEADIVIKSTEGE-------RKQIEAQQNKQQAISEKDRGNGFFKE 295
Query: 73 KRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQT 132
+Y AI+ + + +A L ++ + + + A A+ + +++
Sbjct: 296 GKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFAR 355
Query: 133 LGRAQLGLGEIILAIRSFQVALHIYPMNPE 162
G A+ LG++ A + F+ L + P N +
Sbjct: 356 RGTARTFLGKLNEAKQDFETVLLLEPGNKQ 385
>gi|225735591 RNA polymerase II associated protein 3 isoform 1 [Homo
sapiens]
Length = 665
Score = 35.4 bits (80), Expect = 0.051
Identities = 35/168 (20%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 8 RKIGEKVSKVTSQQFEAEAADEKDV------VDNDEGNWLHAIKRRKEILLEGC---AEK 58
+K E+ +K + ++ EA + DV +D D+ ++ + E +G ++K
Sbjct: 74 KKTREENTKNRIKSYDYEAWAKLDVDRILDELDKDDSTH-ESLSQESESEEDGIHVDSQK 132
Query: 59 SKQLKDEGASLAENKRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEM 118
+ LK++G + +Y EAI + + + P + L ++ L + A +
Sbjct: 133 ALVLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNL 192
Query: 119 AVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMNPEIWKE 166
AV N +++ G A+ L ++ A + ++ L + P N E E
Sbjct: 193 AVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNE 240
Score = 30.0 bits (66), Expect = 2.1
Identities = 27/150 (18%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
Query: 13 KVSKVTSQQFEAEAADEKDVVDNDEGNWLHAIKRRKEILLEGCAEKSKQLKDEGASLAEN 72
K+S+ + + + + V+ + EG RK+I + +++ KD G +
Sbjct: 243 KISQALASKENSYPKEADIVIKSTEGE-------RKQIEAQQNKQQAISEKDRGNGFFKE 295
Query: 73 KRYREAIQKWDEALQLTPNDATLYEMKSQVLMSLHEMFPAVHAAEMAVQQNPHSWESWQT 132
+Y AI+ + + +A L ++ + + + A A+ + +++
Sbjct: 296 GKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFAR 355
Query: 133 LGRAQLGLGEIILAIRSFQVALHIYPMNPE 162
G A+ LG++ A + F+ L + P N +
Sbjct: 356 RGTARTFLGKLNEAKQDFETVLLLEPGNKQ 385
>gi|196259776 peroxisomal biogenesis factor 5 isoform d [Homo
sapiens]
Length = 639
Score = 35.4 bits (80), Expect = 0.051
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 112 AVHAAEMAVQQNPHSWESWQTLGRAQLGLGEIILAIRSFQVALHIYPMN 160
AV E AVQQ+P E+WQ LG Q + +LAI + + L + P N
Sbjct: 354 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 402
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.126 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,540,689
Number of Sequences: 37866
Number of extensions: 374006
Number of successful extensions: 1294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 137
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.