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Search of human proteins with 7110661
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens] 676 0.0
gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens] 666 0.0
gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens] 666 0.0
gi|194097365 FtsJ homolog 3 [Homo sapiens] 158 7e-39
gi|7019377 FtsJ homolog 2 [Homo sapiens] 120 2e-27
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap... 49 8e-06
gi|153792086 FtsJ methyltransferase domain containing 1 [Homo sa... 41 0.002
gi|153791865 FtsJ methyltransferase domain containing 1 [Homo sa... 41 0.002
gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens] 34 0.16
gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens] 34 0.16
gi|21493045 A-kinase anchor protein 6 [Homo sapiens] 32 0.60
gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ... 32 0.78
gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ... 32 0.78
gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens] 31 1.7
gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo ... 31 1.7
gi|5031887 LIM domain containing preferred translocation partner... 31 1.7
gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific ... 30 3.9
gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo ... 30 3.9
gi|197313748 SET domain containing 2 [Homo sapiens] 30 3.9
gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens] 30 3.9
gi|238859653 pleckstrin homology domain containing family A memb... 29 5.0
gi|238859651 pleckstrin homology domain containing family A memb... 29 5.0
gi|109689723 abl interactor 2 [Homo sapiens] 29 5.0
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 29 6.6
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 29 6.6
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 29 6.6
gi|161019170 mucin 5AC [Homo sapiens] 28 8.6
gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens] 28 8.6
gi|242247075 bromodomain containing 9 isoform 2 [Homo sapiens] 28 8.6
gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Ho... 28 8.6
>gi|7110661 FtsJ homolog 1 isoform a [Homo sapiens]
Length = 329
Score = 676 bits (1744), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD 240
KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD 240
Query: 241 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 300
LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
Sbjct: 241 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 300
Query: 301 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 329
DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 301 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 329
>gi|29029591 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 666 bits (1718), Expect = 0.0
Identities = 327/329 (99%), Positives = 327/329 (99%), Gaps = 2/329 (0%)
Query: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD 240
KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY DFNQLDGPTRIIVPFVTCGD
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY--DFNQLDGPTRIIVPFVTCGD 238
Query: 241 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 300
LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
Sbjct: 239 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 298
Query: 301 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 329
DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 299 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 327
>gi|29029589 FtsJ homolog 1 isoform b [Homo sapiens]
Length = 327
Score = 666 bits (1718), Expect = 0.0
Identities = 327/329 (99%), Positives = 327/329 (99%), Gaps = 2/329 (0%)
Query: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD
Sbjct: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
Query: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
Query: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGD 240
KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY DFNQLDGPTRIIVPFVTCGD
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSY--DFNQLDGPTRIIVPFVTCGD 238
Query: 241 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 300
LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV
Sbjct: 239 LSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRV 298
Query: 301 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 329
DTFPQPLAAPQCHTLLAPEMEDNEMSCSP
Sbjct: 299 DTFPQPLAAPQCHTLLAPEMEDNEMSCSP 327
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 158 bits (399), Expect = 7e-39
Identities = 88/202 (43%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Query: 2 GRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQ 61
G+ K +RD +Y LAKE G+R+RSAFKL+QL++ FQ Q +DLCAAPG W QV ++
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAK 64
Query: 62 KIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
+ S +V VDL + PLP VV +Q DIT + + + K D+V+ DGAP+V
Sbjct: 65 FM--PVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNV 122
Query: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
D Y QA L L AL +A L GG F+ K+FR RD L Q F V K
Sbjct: 123 GASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATK 182
Query: 182 PRSSRNSSIEAFAVCQGYDPPE 203
P++SR+ S E F VCQG+ P+
Sbjct: 183 PQASRHESAEIFVVCQGFLAPD 204
>gi|7019377 FtsJ homolog 2 [Homo sapiens]
Length = 246
Score = 120 bits (301), Expect = 2e-27
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 7/205 (3%)
Query: 9 RDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS 68
RD + + AK +R RSAFKLL++++ Q+ + R +D AAPG+WSQV QK+ G+
Sbjct: 40 RDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGT 99
Query: 69 ------GHVVAVDLQAMAPLPGVVQI-QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDV 121
G V+ VDL + PL G + D+T T++ I++ G AD+++ D AP+
Sbjct: 100 DPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNA 159
Query: 122 TGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAK 181
TG D+D L L L++ +L+PGG F+ K + G L +L F +V K
Sbjct: 160 TGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIK 219
Query: 182 PRSSRNSSIEAFAVCQGYDPPEGFI 206
P +SR S E + + Y +G +
Sbjct: 220 PEASRKESSEVYFLATQYHGRKGTV 244
>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
sapiens]
Length = 835
Score = 48.5 bits (114), Expect = 8e-06
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 32/196 (16%)
Query: 28 KLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVL--SQKIGGQGSGHVV------------A 73
K L D+E +L D+CA PG +S+ + +K +G G + +
Sbjct: 260 KPLVKDREAELLY----FADVCAGPGGFSEYVLWRKKWHAKGFGMTLKGPNDFKLEDFYS 315
Query: 74 VDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPAD--------LVVCDGAPDVTGLH 125
+ P G I GD T E I F+ D ++ DG V G
Sbjct: 316 ASSELFEPYYGEGGIDGDGD--ITRPENISAFRNFVLDNTDRKGVHFLMADGGFSVEGQE 373
Query: 126 DVDEYMQAQLLLAALNIATHVLKPGGCFVAK---IFRGRDVTLLYSQLQVFFSSVLCAKP 182
++ E + QLLL +A +++ GG F+ K +F V L+Y L F V KP
Sbjct: 374 NLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSVGLVY-LLYCCFERVCLFKP 432
Query: 183 RSSRNSSIEAFAVCQG 198
+SR ++ E + VC+G
Sbjct: 433 ITSRPANSERYVVCKG 448
>gi|153792086 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 112 LVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRD---VTLLYS 168
LV DG+ D G E + + L + A L GG FV K+F + + L+Y
Sbjct: 231 LVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYL 290
Query: 169 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLD 215
L F V KP +S+ + E + VC Y E P LSK L+
Sbjct: 291 -LNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLN 336
>gi|153791865 FtsJ methyltransferase domain containing 1 [Homo
sapiens]
Length = 770
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 112 LVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRD---VTLLYS 168
LV DG+ D G E + + L + A L GG FV K+F + + L+Y
Sbjct: 231 LVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYL 290
Query: 169 QLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLD 215
L F V KP +S+ + E + VC Y E P LSK L+
Sbjct: 291 -LNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLN 336
>gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 34.3 bits (77), Expect = 0.16
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 44 RAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQ 103
R +D+C APG + ++Q + + +G ++A D A + + G++ +L II
Sbjct: 383 RILDMCCAPGGKTSYMAQLM--KNTGVILANDANA----ERLKSVVGNLHRLGVTNTIIS 436
Query: 104 HFKGCP-------ADLVVCDGAPDVTGLHDVD---------------EYMQAQLLLAALN 141
H+ G D V+ D TG+ D ++Q +LLL+A++
Sbjct: 437 HYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAID 496
Query: 142 IATHVLKPGGCFV 154
K GG V
Sbjct: 497 SVNATSKTGGYLV 509
>gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 34.3 bits (77), Expect = 0.16
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 28/133 (21%)
Query: 44 RAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQ 103
R +D+C APG + ++Q + + +G ++A D A + + G++ +L II
Sbjct: 383 RILDMCCAPGGKTSYMAQLM--KNTGVILANDANA----ERLKSVVGNLHRLGVTNTIIS 436
Query: 104 HFKGCP-------ADLVVCDGAPDVTGLHDVD---------------EYMQAQLLLAALN 141
H+ G D V+ D TG+ D ++Q +LLL+A++
Sbjct: 437 HYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAID 496
Query: 142 IATHVLKPGGCFV 154
K GG V
Sbjct: 497 SVNATSKTGGYLV 509
>gi|21493045 A-kinase anchor protein 6 [Homo sapiens]
Length = 2319
Score = 32.3 bits (72), Expect = 0.60
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 208 DLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEY--KYTPP 265
D+S L+ S + + N LD + ++P + G+ S+ D D GGS+Y T P
Sbjct: 1223 DISNKLI--SLNEESNDLDQELQPVIPSLKLGETSNEDPGYDEEADNHGGSQYASNITAP 1280
Query: 266 TQPPISPPY 274
+ P I Y
Sbjct: 1281 SSPHIYQVY 1289
>gi|40254823 SH2 containing inositol phosphatase isoform b [Homo
sapiens]
Length = 1188
Score = 32.0 bits (71), Expect = 0.78
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 263 TPPTQPPISPPYQEACTLKR-KGQLAKEIRPQDCPISRVDTFPQ---PLAAPQ 311
TPP QPPISP T R +E RP D + DT PQ PL P+
Sbjct: 962 TPPGQPPISPKKFLPSTANRGLPPRTQESRPSDLGKNAGDTLPQEDLPLTKPE 1014
>gi|64085167 SH2 containing inositol phosphatase isoform a [Homo
sapiens]
Length = 1189
Score = 32.0 bits (71), Expect = 0.78
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 263 TPPTQPPISPPYQEACTLKR-KGQLAKEIRPQDCPISRVDTFPQ---PLAAPQ 311
TPP QPPISP T R +E RP D + DT PQ PL P+
Sbjct: 963 TPPGQPPISPKKFLPSTANRGLPPRTQESRPSDLGKNAGDTLPQEDLPLTKPE 1015
>gi|239754889 PREDICTED: similar to hCG2036697 [Homo sapiens]
Length = 1029
Score = 30.8 bits (68), Expect = 1.7
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 32 LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
L KEF +F + V L +A + L Q + Q G V Q+ V +I
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395
Query: 92 ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
I + K + + + DG D TG DVD + + + L +I+ +K G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESMKSPG 448
Query: 152 CFVAKIFRGRDVTLLYSQ 169
FV G+ ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466
>gi|239749428 PREDICTED: hypothetical protein XP_002347033 [Homo
sapiens]
Length = 1029
Score = 30.8 bits (68), Expect = 1.7
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 10/138 (7%)
Query: 32 LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
L KEF +F + V L +A + L Q + Q G V Q+ V +I
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395
Query: 92 ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
I + K + + + DG D TG DVD + + + L +I+ +K G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESMKSPG 448
Query: 152 CFVAKIFRGRDVTLLYSQ 169
FV G+ ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466
>gi|5031887 LIM domain containing preferred translocation partner in
lipoma [Homo sapiens]
Length = 612
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 245 DSDRSYPLDLEGGSEYKYTPP-------TQPPISPPY----------QEACTLKRKGQLA 287
DS S DLE S YK PP PP+S P Q T +K L
Sbjct: 122 DSLTSILADLECSSPYKPRPPQSSTGSTASPPVSTPVTGHKRMVIPNQPPLTATKKSTLK 181
Query: 288 KEIRPQ--DCPISRVDTF-PQPLAAPQCHT 314
+ PQ P++ + T PQP P +T
Sbjct: 182 PQPAPQAGPIPVAPIGTLKPQPQPVPASYT 211
>gi|226371750 terminal uridylyl transferase 1, U6 snRNA-specific
[Homo sapiens]
Length = 912
Score = 29.6 bits (65), Expect = 3.9
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 221 DFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPP-TQPPISPPYQEACT 279
D L+ P P + S DS + PLD + + +PP +QPP SP EA
Sbjct: 260 DLGDLEEPQ----PVPKAPESPSLDSALASPLDPQALACTPASPPDSQPPASPQDSEALD 315
Query: 280 LKRKGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAPEMEDNE 324
+ P S + LA+PQ +P +ED E
Sbjct: 316 FETPSSSLAPQTPDSALAS------ETLASPQSLPPASPLLEDRE 354
>gi|239743562 PREDICTED: hypothetical protein XP_002342894 [Homo
sapiens]
Length = 1029
Score = 29.6 bits (65), Expect = 3.9
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 32 LDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGSGHVVAVDLQAMAPLPGVVQIQGD 91
L KEF +F + V L +A + L Q + Q G V Q+ V +I
Sbjct: 339 LSKEFVIF---VKGVFLNSAVVLLATSLCQALCLQPDGSCTGVGSQSEKSYWKVHKISSG 395
Query: 92 ITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVLKPGG 151
I + K + + + DG D TG DVD + + + L +I+ K G
Sbjct: 396 ICMFESVKNAQMYLR-------IKDGRCDGTGTGDVDCHFKIKKNLKNASISLESTKSPG 448
Query: 152 CFVAKIFRGRDVTLLYSQ 169
FV G+ ++Y++
Sbjct: 449 LFVGLQSDGQAKPMIYTK 466
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 29.6 bits (65), Expect = 3.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 263 TPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTFPQPL 307
+PP+ PP PP +A TL + + + PI+ + P PL
Sbjct: 185 SPPSSPPPPPPPAQATTLSSPAPVTEPVALPHTPITVLMAAPVPL 229
>gi|28274709 zinc finger, X-linked, duplicated A [Homo sapiens]
Length = 799
Score = 29.6 bits (65), Expect = 3.9
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 252 LDLEGGSEYKYTPPT---QPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTF----- 303
L E G TPP +P +P Q C + + + P DCP R D
Sbjct: 174 LRFENGVLTLATPPPHAWEPGAAPAQQPRCLIAPQAGFPQAAHPGDCPELRSDLLLAEPA 233
Query: 304 -PQPLAAPQ 311
P P APQ
Sbjct: 234 EPAPAPAPQ 242
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 29.3 bits (64), Expect = 5.0
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 217 SYDPDFNQLD---GPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP--IS 271
S P+ +L G R++ P T S R+ DL +TP ++PP +S
Sbjct: 192 SESPEVTRLSRGRGRPRLLTPSPTTDLHSGLQMRRARSPDL-------FTPLSRPPSPLS 244
Query: 272 PPYQEACTLKR----KGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAP 318
P + +R G A RP P+SR+D P PQ TL P
Sbjct: 245 LPRPRSAPARRPPAPSGDTAPPARPHT-PLSRIDVRPPLDWGPQRQTLSRP 294
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 29.3 bits (64), Expect = 5.0
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 217 SYDPDFNQLD---GPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP--IS 271
S P+ +L G R++ P T S R+ DL +TP ++PP +S
Sbjct: 192 SESPEVTRLSRGRGRPRLLTPSPTTDLHSGLQMRRARSPDL-------FTPLSRPPSPLS 244
Query: 272 PPYQEACTLKR----KGQLAKEIRPQDCPISRVDTFPQPLAAPQCHTLLAP 318
P + +R G A RP P+SR+D P PQ TL P
Sbjct: 245 LPRPRSAPARRPPAPSGDTAPPARPHT-PLSRIDVRPPLDWGPQRQTLSRP 294
>gi|109689723 abl interactor 2 [Homo sapiens]
Length = 475
Score = 29.3 bits (64), Expect = 5.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 253 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCPISRVDTFPQP 306
+++ G + TPPTQ P SPP TL R + + P P+ D P P
Sbjct: 159 NMKMGGLPRTTPPTQKPPSPPMSGKGTLGRHSPY-RTLEPVRPPVVPNDYVPSP 211
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 28.9 bits (63), Expect = 6.6
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 14/147 (9%)
Query: 178 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVT 237
L A+P + S ++ A+ Q P +P L K HS + Q D ++ P
Sbjct: 747 LPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQV 806
Query: 238 CGDLSSYDSDRSYPLDLEGGSEYK-YTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCP 296
G L + P L+ K + P QPP+ ++ L K+++P P
Sbjct: 807 QGPLGKIMPVKQ-PYYLQTQDPIKLFEPSLQPPV----------MQQQPLEKKMKP--FP 853
Query: 297 ISRVDTFPQPLAAPQCHTLLAPEMEDN 323
+ + P + P+ + + M DN
Sbjct: 854 MEPYNHNPSEVKVPEFYWDSSYSMADN 880
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 28.9 bits (63), Expect = 6.6
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 14/147 (9%)
Query: 178 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVT 237
L A+P + S ++ A+ Q P +P L K HS + Q D ++ P
Sbjct: 659 LPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQV 718
Query: 238 CGDLSSYDSDRSYPLDLEGGSEYK-YTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCP 296
G L + P L+ K + P QPP+ ++ L K+++P P
Sbjct: 719 QGPLGKIMPVKQ-PYYLQTQDPIKLFEPSLQPPV----------MQQQPLEKKMKP--FP 765
Query: 297 ISRVDTFPQPLAAPQCHTLLAPEMEDN 323
+ + P + P+ + + M DN
Sbjct: 766 MEPYNHNPSEVKVPEFYWDSSYSMADN 792
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 28.9 bits (63), Expect = 6.6
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 14/147 (9%)
Query: 178 LCAKPRSSRNSSIEAFAVCQGYDPPEGFIPDLSKPLLDHSYDPDFNQLDGPTRIIVPFVT 237
L A+P + S ++ A+ Q P +P L K HS + Q D ++ P
Sbjct: 701 LPAQPTAQSTSQLQVQALTQQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQV 760
Query: 238 CGDLSSYDSDRSYPLDLEGGSEYK-YTPPTQPPISPPYQEACTLKRKGQLAKEIRPQDCP 296
G L + P L+ K + P QPP+ ++ L K+++P P
Sbjct: 761 QGPLGKIMPVKQ-PYYLQTQDPIKLFEPSLQPPV----------MQQQPLEKKMKP--FP 807
Query: 297 ISRVDTFPQPLAAPQCHTLLAPEMEDN 323
+ + P + P+ + + M DN
Sbjct: 808 MEPYNHNPSEVKVPEFYWDSSYSMADN 834
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 28.5 bits (62), Expect = 8.6
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 263 TPPTQPPISPPYQEACTLKRKGQLAK--EIRPQDCPISRV-----DTFPQPLAAPQCHTL 315
T P P+ PP QE+ + +G RPQ C + TFP L C T
Sbjct: 5826 TCPQSLPVCPPGQESICTQEEGDCCPTFRCRPQLCSYNGTFYGVGATFPGALPCHMC-TC 5884
Query: 316 LAPEMEDNEMSC 327
L+ + +D + C
Sbjct: 5885 LSGDTQDPTVQC 5896
>gi|237649104 bromodomain containing 9 isoform 1 [Homo sapiens]
Length = 597
Score = 28.5 bits (62), Expect = 8.6
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 91 DITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQA 133
+++ LS A E QH G P+ L V + PDVT HD E++Q+
Sbjct: 549 NLSSLSNASERDQHHLGSPSRLSVGE-QPDVT--HDPYEFLQS 588
>gi|242247075 bromodomain containing 9 isoform 2 [Homo sapiens]
Length = 544
Score = 28.5 bits (62), Expect = 8.6
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 91 DITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQA 133
+++ LS A E QH G P+ L V + PDVT HD E++Q+
Sbjct: 496 NLSSLSNASERDQHHLGSPSRLSVGE-QPDVT--HDPYEFLQS 535
>gi|169201757 PREDICTED: chromosome 10 open reading frame 134 [Homo
sapiens]
Length = 626
Score = 28.5 bits (62), Expect = 8.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 253 DLEGGSEYKYTPPTQPPISPPYQEACTLKRKGQ 285
+LE EY P PP+ PP K+KGQ
Sbjct: 178 ELEKSLEYSTVPTPLPPVPPPPPPPPPTKKKGQ 210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,381,645
Number of Sequences: 37866
Number of extensions: 695254
Number of successful extensions: 2064
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2037
Number of HSP's gapped (non-prelim): 46
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.