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Search of human proteins with 70887661
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|70887661 hypothetical protein LOC284009 [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|70887661 hypothetical protein LOC284009 [Homo sapiens] 325 1e-89
gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens] 32 0.22
gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo ... 32 0.22
gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo ... 32 0.22
gi|169167057 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|239757068 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|169163903 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|239751578 PREDICTED: hypothetical protein [Homo sapiens] 28 3.2
gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo ... 28 3.2
gi|239746090 PREDICTED: hypothetical protein XP_002343655 [Homo ... 28 3.2
gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo ... 28 4.2
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 28 4.2
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 28 4.2
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 28 4.2
gi|198041688 syntaxin 16 isoform c [Homo sapiens] 28 4.2
gi|40288288 coactivator-associated arginine methyltransferase 1 ... 27 5.5
gi|66932941 XC chemokine receptor 1 [Homo sapiens] 27 5.5
gi|4885339 XC chemokine receptor 1 [Homo sapiens] 27 5.5
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo... 27 7.1
gi|153791946 hypothetical protein LOC57462 [Homo sapiens] 27 7.1
gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 27 7.1
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens] 27 7.1
gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens] 27 7.1
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 27 9.3
>gi|70887661 hypothetical protein LOC284009 [Homo sapiens]
Length = 157
Score = 325 bits (833), Expect = 1e-89
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MLSVSRPCFSQGAFLGRTLGSVWAQGGSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGAR 60
MLSVSRPCFSQGAFLGRTLGSVWAQGGSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGAR
Sbjct: 1 MLSVSRPCFSQGAFLGRTLGSVWAQGGSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGAR 60
Query: 61 GRKEHRLRRSDLGSRPVPFLAQGIPDIVIRLLCLSAGSASSHQASDPLSSAAATLAAELD 120
GRKEHRLRRSDLGSRPVPFLAQGIPDIVIRLLCLSAGSASSHQASDPLSSAAATLAAELD
Sbjct: 61 GRKEHRLRRSDLGSRPVPFLAQGIPDIVIRLLCLSAGSASSHQASDPLSSAAATLAAELD 120
Query: 121 WALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWLPG 157
WALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWLPG
Sbjct: 121 WALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWLPG 157
>gi|239756897 PREDICTED: similar to hCG1994130 [Homo sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 105 SDPLSSAAATLAAELDWALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWLP 156
S+P SS A+ + SQ SSE P++ + ++ T CP PR LP
Sbjct: 62 SEPRSSRASAQTCARSKSPPSQHSSETRGVPTVPASSAGYIETGCPRPRPLP 113
>gi|239751393 PREDICTED: hypothetical protein XP_002347835 [Homo
sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 105 SDPLSSAAATLAAELDWALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWLP 156
S+P SS A+ + SQ SSE P++ + ++ T CP PR LP
Sbjct: 62 SEPRSSRASAQTCARSKSPPSQHSSETRGVPTVPASSAGYIETGCPRPRPLP 113
>gi|239745900 PREDICTED: hypothetical protein XP_002343613 [Homo
sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 105 SDPLSSAAATLAAELDWALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWLP 156
S+P SS A+ + SQ SSE P++ + ++ T CP PR LP
Sbjct: 62 SEPRSSRASAQTCARSKSPPSQHSSETRGVPTVPASSAGYIETGCPRPRPLP 113
>gi|169167057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 29.6 bits (65), Expect = 1.1
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 68 RRSDLGSRPVPF-LAQGIPDIV------IRLLCLSAGSASSHQASDPLSSAAATLAAELD 120
RR G+ P LAQG P + +++ AS+ ++DP + A A
Sbjct: 26 RRGTAGNLPRRLPLAQGSPRCCRFCKGSVSTATVTSSGASAPGSADPTLGSTAARRASAP 85
Query: 121 WALVSQKSSEDLAPPSLLLNCISFLITQCPHPR 153
WA +S ++ L L L PH R
Sbjct: 86 WASLSTRADSGLRHLDRLRKAARLLFVNTPHVR 118
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.5 bits (62), Expect = 2.5
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 11 QGAFLGR-----TLGSVWAQGGSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGARGRKEH 65
+GA GR G WA LP + GRPA +H+ A + R R
Sbjct: 137 EGAGAGRGTPATMAGGEWAAEPLHLP-------QRGRPAPLHLPEREATEARPRRRRARR 189
Query: 66 RLRRSDLGSRPVPFLAQGIPDIVIRLLCLSAGSASSHQASDPLSSAAATLA 116
RLR L P L +GI + ++ ++A H S P SA A+ A
Sbjct: 190 RLR--VLEPHPPARLGRGIGRVWVK--GITAWGLEGHIFSAPRISATASTA 236
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.5 bits (62), Expect = 2.5
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 11 QGAFLGR-----TLGSVWAQGGSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGARGRKEH 65
+GA GR G WA LP + GRPA +H+ A + R R
Sbjct: 137 EGAGAGRGTPATMAGGEWAAEPLHLP-------QRGRPAPLHLPEREATEARPRRRRARR 189
Query: 66 RLRRSDLGSRPVPFLAQGIPDIVIRLLCLSAGSASSHQASDPLSSAAATLA 116
RLR L P L +GI + ++ ++A H S P SA A+ A
Sbjct: 190 RLR--VLEPHPPARLGRGIGRVWVK--GITAWGLEGHIFSAPRISATASTA 236
>gi|239757068 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 28.1 bits (61), Expect = 3.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 27 GSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGARGRKEH 65
G R+P C W GR V +GGE AR G RGR H
Sbjct: 164 GDRVPGCGWM----GR--VPGLGGEDARCGGGPRGRGAH 196
>gi|169163903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 28.1 bits (61), Expect = 3.2
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 32 LCFWYRIRCGRPAVV-HIGGEGARWEKGARGRKEHRLRRSDLGSRPVPFLAQGIPDIVIR 90
LCF R A+V H+ + KG G EH +R GS F++ IP +
Sbjct: 5 LCFIKHFRVVDAAIVEHLLDDQP---KGEGGDVEHVQQRGFAGSH---FVSMVIPKAWKK 58
Query: 91 LLCLS------AGSASSHQASDPLSSAAATLAAELDWALVSQKSS 129
+ AG+ +SH A P +AA TL A + +L+S +SS
Sbjct: 59 EVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLAS-NMSLISVRSS 102
>gi|239751578 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 28.1 bits (61), Expect = 3.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 27 GSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGARGRKEH 65
G R+P C W GR V +GGE AR G RGR H
Sbjct: 164 GDRVPGCGWM----GR--VPGLGGEDARCGGGPRGRGAH 196
>gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo
sapiens]
Length = 113
Score = 28.1 bits (61), Expect = 3.2
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 32 LCFWYRIRCGRPAVV-HIGGEGARWEKGARGRKEHRLRRSDLGSRPVPFLAQGIPDIVIR 90
LCF R A+V H+ + KG G EH +R GS F++ IP +
Sbjct: 5 LCFIKHFRVVDAAIVEHLLDDQP---KGEGGDVEHVQQRGFAGSH---FVSMVIPKAWKK 58
Query: 91 LLCLS------AGSASSHQASDPLSSAAATLAAELDWALVSQKSS 129
+ AG+ +SH A P +AA TL A + +L+S +SS
Sbjct: 59 EVFSGPRPVFWAGTVTSHGAMAPARAAAGTLLAS-NMSLISVRSS 102
>gi|239746090 PREDICTED: hypothetical protein XP_002343655 [Homo
sapiens]
Length = 312
Score = 28.1 bits (61), Expect = 3.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 27 GSRLPLCFWYRIRCGRPAVVHIGGEGARWEKGARGRKEH 65
G R+P C W GR V +GGE AR G RGR H
Sbjct: 164 GDRVPGCGWM----GR--VPGLGGEDARCGGGPRGRGAH 196
>gi|239741578 PREDICTED: hypothetical protein XP_002342256 [Homo
sapiens]
Length = 113
Score = 27.7 bits (60), Expect = 4.2
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 57 KGARGRKEHRLRRSDLGSRPVPFLAQGIPDIVIRLLCLS------AGSASSHQASDPLSS 110
KG G EH +R GS F++ IP + + AG+ +SH A P +
Sbjct: 28 KGEGGDVEHVQQRGFAGSH---FVSMVIPKAWKKEVFSGPRPVFWAGTVTSHGAMAPARA 84
Query: 111 AAATLAAELDWALVSQKSS 129
AA TL A + +L+S +SS
Sbjct: 85 AAGTLLAS-NMSLISVRSS 102
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 27.7 bits (60), Expect = 4.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 49 GGEGARWEKGARGRKEHRLRRSDLGSR-----PVPFLAQGIP 85
G GA E GARG + H + D G+R P P QG+P
Sbjct: 1034 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP 1075
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 27.7 bits (60), Expect = 4.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 49 GGEGARWEKGARGRKEHRLRRSDLGSR-----PVPFLAQGIP 85
G GA E GARG + H + D G+R P P QG+P
Sbjct: 1013 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP 1054
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 27.7 bits (60), Expect = 4.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 49 GGEGARWEKGARGRKEHRLRRSDLGSR-----PVPFLAQGIP 85
G GA E GARG + H + D G+R P P QG+P
Sbjct: 1120 GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLP 1161
>gi|198041688 syntaxin 16 isoform c [Homo sapiens]
Length = 321
Score = 27.7 bits (60), Expect = 4.2
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 94 LSAGSASSHQASDPLSSAAATLAAELDWALVSQKSSEDLAPPSLLLNCISFLITQCPHPR 153
L A SSH S PL S + A+ ALVS S + A + +T+ P P+
Sbjct: 23 LLAEQVSSHITSSPLHSRSIAALADDRMALVSGISLDPEA---------AIGVTKRPPPK 73
Query: 154 WLPG 157
W+ G
Sbjct: 74 WVDG 77
>gi|40288288 coactivator-associated arginine methyltransferase 1
[Homo sapiens]
Length = 608
Score = 27.3 bits (59), Expect = 5.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 13 AFLGRTLGSVWAQGGSRLPLCFWYRIRC 40
AF+G + +VW PL WY++RC
Sbjct: 394 AFIGSIM-TVWLSTAPTEPLTHWYQVRC 420
>gi|66932941 XC chemokine receptor 1 [Homo sapiens]
Length = 333
Score = 27.3 bits (59), Expect = 5.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 121 WALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWL 155
W LV +S E L +L C+S L+ C P W+
Sbjct: 54 WVLVKYESLESLTNIFILNLCLSDLVFACLLPVWI 88
>gi|4885339 XC chemokine receptor 1 [Homo sapiens]
Length = 333
Score = 27.3 bits (59), Expect = 5.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 121 WALVSQKSSEDLAPPSLLLNCISFLITQCPHPRWL 155
W LV +S E L +L C+S L+ C P W+
Sbjct: 54 WVLVKYESLESLTNIFILNLCLSDLVFACLLPVWI 88
>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
sapiens]
Length = 674
Score = 26.9 bits (58), Expect = 7.1
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 59 ARGRKEHRLRRSDLGSRPVPFLAQGIPDIVIRLLCLSAGSASSHQASDPLSSAAATLAAE 118
AR R RLR L P+P L Q +P + + S A+ SSAAA A +
Sbjct: 611 ARARAWARLRNPPLA--PIPALTQTLPSSSVPSSPVQTTPLSQAVATPSRSSAAAAAALD 668
Query: 119 L 119
L
Sbjct: 669 L 669
>gi|153791946 hypothetical protein LOC57462 [Homo sapiens]
Length = 714
Score = 26.9 bits (58), Expect = 7.1
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 25/96 (26%)
Query: 8 CFSQGAFLGRTLGSVWAQGGSRLPLCFW------------YRIRCGRPA-------VVHI 48
C GA LG +L + LPL F+ YR+R A + +
Sbjct: 125 CSRDGALLGCSLTA------DGLPLHFFIQTVRPKDTVMCYRVRWEEAAPGRAVEHAMFL 178
Query: 49 GGEGARWEKGARGRKEHRLRRSDLGSRPVPFLAQGI 84
G A W GA R +H R D P PF+ +
Sbjct: 179 GDAAAHWYGGAEMRTQHWPIRLDGQQEPQPFVTSDV 214
>gi|21264337 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
3 [Homo sapiens]
Length = 1544
Score = 26.9 bits (58), Expect = 7.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 31 PLCFWYRIR-CGRPAVVHIGGEGARWEKGA-RGRKEHRLRRSDLGSR 75
P C +Y ++ G P G R +G +GR EHRL R DL +R
Sbjct: 201 PGCLYYGVQPVGTP-----GAPDRRESRGVCQGRAEHRLSRQDLEAR 242
>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
Length = 1693
Score = 26.9 bits (58), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 45 VVHIGG-EGARWEKGARGRKEHRLRRSDL 72
VVH+G E + W K +G EH LRR +
Sbjct: 759 VVHLGDKEQSNWAKEVQGISEHYLRRKGI 787
>gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
Length = 1706
Score = 26.9 bits (58), Expect = 7.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 45 VVHIGG-EGARWEKGARGRKEHRLRRSDL 72
VVH+G E + W K +G EH LRR +
Sbjct: 759 VVHLGDKEQSNWAKEVQGISEHYLRRKGI 787
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 26.6 bits (57), Expect = 9.3
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 36 YRIRCGRPAVVHIGGEGARWEKGA--RGRK-EHRLRRSDLGSRPVPFLAQGI-------P 85
Y+ R GRP VV +GGE + G GRK + L G R P A G+ P
Sbjct: 2129 YKDRDGRPQVVRVGGEESEVTVGGLEPGRKYKMHLYGLHEGRRVGPVSAVGVTAPEEESP 2188
Query: 86 DIVIRLLCLSAGSASSHQASDPLSSAAATLAAELDWALVSQKSSE 130
D + L L + SD LS + + D LV K+ +
Sbjct: 2189 DAPLAKLRLGQMTVRD-ITSDSLSLSWTVPEGQFDHFLVQFKNGD 2232
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,722,866
Number of Sequences: 37866
Number of extensions: 294278
Number of successful extensions: 854
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 29
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.