Guide to the Human Genome
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Name: PRELID1 Sequence: fasta or formatted (219aa) NCBI GI: 7019509
Description:

PRELI domain containing 1

Referenced in:

Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         21           2
 C cysteine            0.9          2           1
 D aspartate           3.2          7           1
 E glutamate           7.3         16           2
 F phenylalanine       4.6         10           1
 G glycine             2.7          6           1
 H histidine           1.8          4           1
 I isoleucine          2.3          5           1
 K lysine              8.2         18           2
 L leucine             7.8         17           2
 M methionine          2.3          5           1
 N asparagine          4.1          9           1
 P proline             3.2          7           1
 Q glutamine           6.4         14           6
 R arginine            6.4         14           2
 S serine              7.3         16           3
 T threonine           7.3         16           2
 V valine              9.1         20           2
 W tryptophan          2.7          6           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRELI domain containing 1 
SLMO2                 0.135   slowmo homolog 2 
SLMO1                 0.104   slowmo homolog 1 isoform 1 
SLMO1                 0.104   slowmo homolog 1 isoform 1 
SEC14L5               0.070   SEC14-like 5 
SEC14L1               0.068   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.068   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.068   SEC14 (S. cerevisiae)-like 1 isoform b 
SEC14L1               0.068   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.060   SEC14 (S. cerevisiae)-like 1 isoform c 
PRELID2               0.051   PRELI domain containing 2 isoform b 
PRELID2               0.041   PRELI domain containing 2 isoform a 
TRDN                  0.012   triadin 
THUMPD3               0.012   THUMP domain containing 3 
THUMPD3               0.012   THUMP domain containing 3 
RRBP1                 0.010   ribosome binding protein 1 
RRBP1                 0.010   ribosome binding protein 1 
FER                   0.010   fer (fps/fes related) tyrosine kinase 
DNAH10                0.007   dynein, axonemal, heavy chain 10 
C14orf4               0.007   chromosome 14 open reading frame 4 
MYH7                  0.007   myosin, heavy chain 7, cardiac muscle, beta 
CYTSB                 0.007   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.007   spectrin domain with coiled-coils 1 NSP5a3a 
CYTSB                 0.007   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.007   spectrin domain with coiled-coils 1 NSP5b3a 
BAZ1A                 0.007   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.007   bromodomain adjacent to zinc finger domain, 1A isofo...
AP1B1                 0.007   adaptor-related protein complex 1 beta 1 subunit iso...
AP1B1                 0.007   adaptor-related protein complex 1 beta 1 subunit iso...
LRRC45                0.007   leucine rich repeat containing 45 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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