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Search of human proteins with 7019499
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7019499 peroxisome proliferator-activated receptor gamma,
coactivator 1 alpha [Homo sapiens]
(798 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7019499 peroxisome proliferator-activated receptor gamma, coa... 1631 0.0
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 209 6e-54
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 207 3e-53
gi|50083281 KIAA1853 protein [Homo sapiens] 58 3e-08
gi|62460633 RNA-binding motif protein 16 [Homo sapiens] 58 4e-08
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 57 5e-08
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 56 1e-07
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 55 3e-07
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 55 3e-07
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 54 4e-07
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 54 4e-07
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 53 1e-06
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 53 1e-06
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 53 1e-06
gi|52426743 cisplatin resistance-associated overexpressed protei... 53 1e-06
gi|19923485 cisplatin resistance-associated overexpressed protei... 53 1e-06
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 52 2e-06
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 52 3e-06
gi|24762236 PRP38 pre-mRNA processing factor 38 (yeast) domain c... 52 3e-06
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 51 4e-06
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 51 4e-06
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 51 4e-06
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H... 51 5e-06
gi|116812577 LUC7-like 2 [Homo sapiens] 51 5e-06
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 50 6e-06
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 50 6e-06
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 50 6e-06
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 50 8e-06
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 50 8e-06
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 50 1e-05
>gi|7019499 peroxisome proliferator-activated receptor gamma,
coactivator 1 alpha [Homo sapiens]
Length = 798
Score = 1631 bits (4224), Expect = 0.0
Identities = 798/798 (100%), Positives = 798/798 (100%)
Query: 1 MAWDMCNQDSESVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSD 60
MAWDMCNQDSESVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSD
Sbjct: 1 MAWDMCNQDSESVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSD 60
Query: 61 QSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTD 120
QSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTD
Sbjct: 61 QSEIISNQYNNEPSNIFEKIDEENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTD 120
Query: 121 NEASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNP 180
NEASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNP
Sbjct: 121 NEASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECSGLSTQNHANHNHRIRTNP 180
Query: 181 AIVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKK 240
AIVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKK
Sbjct: 181 AIVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKK 240
Query: 241 KSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTP 300
KSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTP
Sbjct: 241 KSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTP 300
Query: 301 PHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQLSK 360
PHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQLSK
Sbjct: 301 PHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQLSK 360
Query: 361 SSVLTGGHEERKTKRPSLRLFGDHDYCQSINSKTEILINISQELQDSRQLENKDVSSDWQ 420
SSVLTGGHEERKTKRPSLRLFGDHDYCQSINSKTEILINISQELQDSRQLENKDVSSDWQ
Sbjct: 361 SSVLTGGHEERKTKRPSLRLFGDHDYCQSINSKTEILINISQELQDSRQLENKDVSSDWQ 420
Query: 421 GQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADK 480
GQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADK
Sbjct: 421 GQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADK 480
Query: 481 TGELRDSDFSNEQFSKLPMFINSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSC 540
TGELRDSDFSNEQFSKLPMFINSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSC
Sbjct: 481 TGELRDSDFSNEQFSKLPMFINSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSC 540
Query: 541 SSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSC 600
SSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSC
Sbjct: 541 SSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSC 600
Query: 601 YYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESE 660
YYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESE
Sbjct: 601 YYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESE 660
Query: 661 RAKQRERQRQKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFI 720
RAKQRERQRQKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFI
Sbjct: 661 RAKQRERQRQKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFI 720
Query: 721 TYRYTCDAFAALENGYTLRRSNETDFELYFCGRKQFFKSNYADLDSNSDDFDPASTKSKY 780
TYRYTCDAFAALENGYTLRRSNETDFELYFCGRKQFFKSNYADLDSNSDDFDPASTKSKY
Sbjct: 721 TYRYTCDAFAALENGYTLRRSNETDFELYFCGRKQFFKSNYADLDSNSDDFDPASTKSKY 780
Query: 781 DSLDFDSLLKEAQRSLRR 798
DSLDFDSLLKEAQRSLRR
Sbjct: 781 DSLDFDSLLKEAQRSLRR 798
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 209 bits (533), Expect = 6e-54
Identities = 181/550 (32%), Positives = 257/550 (46%), Gaps = 106/550 (19%)
Query: 255 PTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFRASP 314
P L L L+ P F K+ E+TL+VEL GTAGLTPPTTPP+K +++PF+
Sbjct: 571 PRCLMLALSQSDPT------FGKKSFEQTLTVELCGTAGLTPPTTPPYKPTEEDPFKPDI 624
Query: 315 KLKSSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQLSKSSVLTGGHEERKTK 374
K + + PS + +++ + KK PE+SEL + L ++ +K
Sbjct: 625 KHSLGKEIALSLPSPEGLSLKATPGAAHKLPKKHPERSELLSHLRHATAQPASQAGQK-- 682
Query: 375 RPSLRLFGDHDYCQSINSKTEILINISQELQDSR-QLENKDVSSDWQGQICSSTDSDQCY 433
RP FGDHDYCQ + + + + + + S LE DW Q ++ Q
Sbjct: 683 RPFSCSFGDHDYCQVLRPEGVLQRKVLRSWEPSGVHLE------DWPQQGAPWAEA-QAP 735
Query: 434 LRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDE--ADKTGE----LRDS 487
RE + +P L+D EIRA L KHFG A+ +++ + K+ E DS
Sbjct: 736 GREEDRSCDAGAPPKDSTLLRDHEIRASLTKHFGLLETALEEEDLASCKSPEYDTVFEDS 795
Query: 488 DFSNEQFSKLPMFINSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPC 547
S+ + S LP ++ E+E ++ + S VSP+CS + P
Sbjct: 796 SSSSGESSFLP-------------EEEEEEGEEEEEDDEEEDS----GVSPTCSD-HCPY 837
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSH 607
+ SPP S+ +++ SRSRS S C S SP +R +
Sbjct: 838 Q---SPP----SKANRQLCSRSRSSSGSSPC--------HSWSPATRRN----------- 871
Query: 608 YRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRER 667
R SR P S D +H R +RE
Sbjct: 872 ------------FRCESRGPCS-----DRTPSIRHARKRRE------------------- 895
Query: 668 QRQKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDD-GDSYGFITYRYTC 726
KAI E RV+Y+ + D + EL+ RFEVFGEIEEC V R+ G+ YGFITYR +
Sbjct: 896 ---KAIGEGRVVYIQNLSSDMSSRELKRRFEVFGEIEECEVLTRNRRGEKYGFITYRCSE 952
Query: 727 DAFAALENGYTLRRSNETDFELYFCGRKQFFKSNYADLDSNSDDFDPASTKSKYDSLDFD 786
A +L G LR+ NE F+L + G + F Y D DSNS++ PAS KSKY+++DFD
Sbjct: 953 HAALSLTKGAALRKRNEPSFQLSYGGLRHFCWPRYTDYDSNSEEALPASGKSKYEAMDFD 1012
Query: 787 SLLKEAQRSL 796
SLLKEAQ+SL
Sbjct: 1013 SLLKEAQQSL 1022
Score = 114 bits (285), Expect = 4e-25
Identities = 82/202 (40%), Positives = 114/202 (56%), Gaps = 19/202 (9%)
Query: 24 GEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEE 83
GE+Q L D PELDLS+LD +D D+ + G L+WC + SE NQY+ + S +F+ ID E
Sbjct: 31 GEEQ-LYADFPELDLSQLDASDFDSATCFGELQWCPENSETEPNQYSPDDSELFQ-IDSE 88
Query: 84 NEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTDNEASP---SSMPDGTP-----PP 135
NEA LLA LT+TLD +P D+ GL +F AL GD + ASP S+ P P P
Sbjct: 89 NEA-LLAELTKTLDDIPEDDVGLAAFPALDGGDALSCTSASPAPSSAPPSPAPEKPSAPA 147
Query: 136 QEAEEPSLLKKLLLAPA-NTQLSYNECSGLSTQNHANHNHRIRTNPAIVKTENSWSNKAK 194
E +E SLL+KLLLA + T S + G + + R ++ VK +++ KA
Sbjct: 148 PEVDELSLLQKLLLATSYPTSSSDTQKEGTAWR---QAGLRSKSQRPCVKADSTQDKKA- 203
Query: 195 SICQQQKPQRRPCSELLKYLTT 216
+ Q R C+EL K+LT+
Sbjct: 204 ---PMMQSQSRSCTELHKHLTS 222
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 207 bits (527), Expect = 3e-53
Identities = 118/235 (50%), Positives = 152/235 (64%), Gaps = 18/235 (7%)
Query: 567 SRSRSFSRHRSCSRSP-YSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSR 625
S S S SR RS S SP + R R S S SR C SS + +S RSRSR
Sbjct: 1445 SSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSR 1504
Query: 626 SPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRER--QRQKAIEERRVIYVGK 683
SP RR R + RR Y S QR+R Q+++AIEERRV+++GK
Sbjct: 1505 SPSPRR---------------RSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGK 1549
Query: 684 IRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITYRYTCDAFAALENGYTLRRSNE 743
I TR+EL+ RF VFGEIEECT++ R GD+YGF+TYRY +AFAA+E+G+ LR+++E
Sbjct: 1550 IPGRMTRSELKQRFSVFGEIEECTIHFRVQGDNYGFVTYRYAEEAFAAIESGHKLRQADE 1609
Query: 744 TDFELYFCGRKQFFKSNYADLDSNSDDFDPASTKSKYDSLDFDSLLKEAQRSLRR 798
F+L F GR+QF K +Y+DLDSN +DFDPA KSK+DSLDFD+LLK+AQ++LRR
Sbjct: 1610 QPFDLCFGGRRQFCKRSYSDLDSNREDFDPAPVKSKFDSLDFDTLLKQAQKNLRR 1664
Score = 40.0 bits (92), Expect = 0.009
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 24/121 (19%)
Query: 274 PFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRY 333
P E + ++R + EL+ AGLTPP TPPH+ + P A L +K P+
Sbjct: 1208 PQEKRPLDRLQAPELANVAGLTPPATPPHQLWK--PLAAVSLLAK---------AKSPKS 1256
Query: 334 SESSGTQGNNSTKKGPEQSELYAQLSKSSVLTGGHEERKTKRPSLRLFGDHDYCQSINSK 393
+ GT + + + Q G H + S GDHDYC + S+
Sbjct: 1257 TAQEGTLKPEGVTEAKHPAAVRLQ-------EGVHGPSRVHVGS----GDHDYC--VRSR 1303
Query: 394 T 394
T
Sbjct: 1304 T 1304
Score = 35.4 bits (80), Expect = 0.21
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 29 LCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQSEIISNQYNNEPSNIFEKIDEENEANL 88
L P L + DL E++ L ++ LG ++ D S I + ++++NE +L
Sbjct: 69 LGPSLRDKDL-EMEELMLQDETLLGTMQSYMDASLISLIEDFGSLGESRLSLEDQNEVSL 127
Query: 89 LAVLTETLDSLPVDEDGLPSFDALTDGDV 117
L LTE LD+ D + L FD++ D ++
Sbjct: 128 LTALTEILDN--ADSENLSPFDSIPDSEL 154
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 58.2 bits (139), Expect = 3e-08
Identities = 123/527 (23%), Positives = 183/527 (34%), Gaps = 76/527 (14%)
Query: 186 ENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKSHTQ 245
E W K++ RP S ++ +T P T+P N + ++
Sbjct: 13 EKFWRGTFKAVATP-----RPESIIVASITARKPLPRTEPQNN------PVVPAQDGPSE 61
Query: 246 SQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKAN 305
QHL +P L S K + + T S LTPP + K
Sbjct: 62 KLGQHLATEP------LGTNSWERDKTC----RELGATRGHSASHDKDLTPPPSSRGKKK 111
Query: 306 QDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQLSKSSVLT 365
+ R + SS P P KK + S + S K S + +
Sbjct: 112 KKKSTRKKRRRSSSYS---PSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSPKSKRRDEKR 168
Query: 366 GGHEERKTKRPSLRLFGDHDYCQSINSKTEILINISQELQDSRQLENKDVSSDWQGQICS 425
H+++ RP H C S + +E + + R E S + CS
Sbjct: 169 --HKKQSRSRPRKSHRHRHHRCPSRSQSSESRPSSCESRHRGRSPEEGQKSRRRHSRRCS 226
Query: 426 STDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQA-VFDDEAD----K 480
T +++ EA P + L R + G S A +F A
Sbjct: 227 KT-----LCKDSPEAQSSRPPSQPLQMLGYLSARGVIT---GSGSAADLFTKTASPLTTS 278
Query: 481 TGELRDSDFSNEQFSKLPMFINS--------GLAMDGLFDDSEDESDKLSYPWDGTQSYS 532
G ++ D N+ S +S G GL E S S + + S
Sbjct: 279 RGRSQEYDSGNDTSSPPSTQTSSARSRGQEKGSPSGGLSKSRELNSGNTSDSGNSFTTSS 338
Query: 533 -------LFNVSPSCSS-----FNSPCRDSVSPPKSLF-----SQRPQRMRSRSRSFSRH 575
L N+SP+ F SPC + KS P + SRS S++
Sbjct: 339 PQNKGAMLENLSPTSRGRESRGFQSPCLECAEVKKSSLVPSTARSSPMKGCSRSSSYAST 398
Query: 576 RSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLY-VRSRSRSP---YSRR 631
RS S S SRSP R+S R +S + R++ SP Y +S RSP SR
Sbjct: 399 RSSSHS------SRSPNPRASPRYTQSRSTSSEK-RSYSRSPSYSSKSGKRSPPSRSSRS 451
Query: 632 PRYDSYEEYQHERLKREEY-RREYEKRESERAKQRERQRQKAIEERR 677
R SY Y R + +Y ++ ++RE ERA++R R + RR
Sbjct: 452 RRSPSYSRYSPSRERDPKYSEKDSQQRERERARRRRRSYSPMRKRRR 498
Score = 45.8 bits (107), Expect = 2e-04
Identities = 110/525 (20%), Positives = 183/525 (34%), Gaps = 98/525 (18%)
Query: 192 KAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKSHTQ------ 245
K K ++ +RR S+ ++ +++ P +K + + + + +KSH
Sbjct: 133 KKKKKSSKKHKRRRSFSKKRRHSSSS---PKSKRRDEKRHKKQSRSRPRKSHRHRHHRCP 189
Query: 246 SQSQHLQAKPTTLSLPLTPESPND-PKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKA 304
S+SQ +++P++ SP + K ++ +TL + PP+ P
Sbjct: 190 SRSQSSESRPSSCESRHRGRSPEEGQKSRRRHSRRCSKTLCKDSPEAQSSRPPSQPLQML 249
Query: 305 NQDNPFRASPKLKSSC----KTVVPPPSKKPRYSE-SSG--------TQGNNSTKKGPEQ 351
+ S+ KT P + + R E SG TQ +++ +G E+
Sbjct: 250 GYLSARGVITGSGSAADLFTKTASPLTTSRGRSQEYDSGNDTSSPPSTQTSSARSRGQEK 309
Query: 352 SELYAQLSKSSVLTGGHEERKTKRPSLRLFGDHDYCQSINSKTEILINISQELQDSRQLE 411
LSKS L G+ G+ S +K +L N+S SR E
Sbjct: 310 GSPSGGLSKSRELNSGNTSDS---------GNSFTTSSPQNKGAMLENLSPT---SRGRE 357
Query: 412 NKDVSSDWQGQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQ 471
++ +Q + + L + S + CS + H S+
Sbjct: 358 SRG----FQSPCLECAEVKKSSLVPSTARSSPMKGCSRSSSYAS-------TRSSSHSSR 406
Query: 472 AVFDDEADKTGELRDSDFSNEQFSKLPMFINSGLAMDGLFDDSEDESDKLSYPWDGTQSY 531
+ + + + R + +S+ P + +S K S P ++S
Sbjct: 407 SPNPRASPRYTQSRSTSSEKRSYSRSPSY--------------SSKSGKRSPPSRSSRSR 452
Query: 532 SLFNVSPSCSSFN-SPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRS--------- 581
SPS S ++ S RD K + +R R R RS+S R R
Sbjct: 453 R----SPSYSRYSPSRERDPKYSEKDSQQRERERARRRRRSYSPMRKRRRDSPSHLEARR 508
Query: 582 ---------PYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRP 632
PY R S GS SS+ S Y SS R+ Y RSRSRS RR
Sbjct: 509 ITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRS------YSRSRSRSRSRRRS 562
Query: 633 RYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEERR 677
R R R R++ R R R ++ + R
Sbjct: 563 R---------TRTSSSSSSRSPSPGSRSRSRSRSRSRSRSRSQSR 598
Score = 30.0 bits (66), Expect = 8.8
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 11/135 (8%)
Query: 556 SLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRN 615
S +S P + + + S R S S R S SP S+ + +S ++HR+
Sbjct: 124 SSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSPKSKRRDEKRHKKQSRSRPRKSHRH 183
Query: 616 SPLYVRSRSRSPYSR------RPRYDSYEEYQ-----HERLKREEYRREYEKRESERAKQ 664
SRS+S SR R R S EE Q H R + ++ + +S R
Sbjct: 184 RHHRCPSRSQSSESRPSSCESRHRGRSPEEGQKSRRRHSRRCSKTLCKDSPEAQSSRPPS 243
Query: 665 RERQRQKAIEERRVI 679
+ Q + R VI
Sbjct: 244 QPLQMLGYLSARGVI 258
>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
Length = 1271
Score = 57.8 bits (138), Expect = 4e-08
Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 44/185 (23%)
Query: 555 KSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHR 614
+ +F Q +++ RSRS + RS SRSP R R SRS SR R HR
Sbjct: 384 EEVFEQEAKKVAVRSRSRTHSRSRSRSP----RKRRSRSRSGSRK-----------RKHR 428
Query: 615 NSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIE 674
RSRSRS +R SY E+R ER K+R+++ I
Sbjct: 429 K-----RSRSRSRERKRKSSRSYSS---------------ERRAREREKERQKKGLPPIR 468
Query: 675 ERRV------IYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITYRYTCDA 728
+ + ++VG++ T+ +L + FE FG+IE + + G +Y + +R DA
Sbjct: 469 SKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINM-IPPRGCAYVCMVHRQ--DA 525
Query: 729 FAALE 733
F AL+
Sbjct: 526 FRALQ 530
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 57.4 bits (137), Expect = 5e-08
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 544 NSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPY---SRSRSRSPG-SRSSSRS 599
+SP ++S +++ RSRS + +R RS SRSPY RSRSRSP +R SRS
Sbjct: 381 SSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRS 440
Query: 600 CYYYESSHYRHRTHRNSPLYVR--SRSRSPYSRRPRYDS---YEEYQHERLKREEYRREY 654
Y++ R R+ SP R SRSRSP R R S +E H +L R++
Sbjct: 441 RSPYKA---RDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDH 497
Query: 655 EKRESERAKQRERQRQKAIEER 676
+ S +++ RQ + + +ER
Sbjct: 498 RRSRSPSKERQCRQSRSSSKER 519
Score = 57.0 bits (136), Expect = 7e-08
Identities = 140/619 (22%), Positives = 230/619 (37%), Gaps = 109/619 (17%)
Query: 124 SPSSMPDGTPPPQEA---------------EEPSLLKKLLLAPANTQLSYNECSGLSTQN 168
S SSMP P P + +P+ + +++P++++ + + + + N
Sbjct: 17 SGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRAPSN 76
Query: 169 HANHNHRIRTN---PAIVKTENSWSNKAKSI---CQQQK--------PQRRPCSELLKYL 214
+ R+R+ P+ V T+ S +K+ C Q++ P RR +
Sbjct: 77 RPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSP 136
Query: 215 TTNDDPPHTK--------------PTENRNSSRDKCTSKKKSHTQSQSQHLQAKPTTLSL 260
+ P + PT + SR K + ++ + +S ++P LS
Sbjct: 137 SRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSD---SQPRNLS- 192
Query: 261 PLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFRASP-KLKSS 319
+S P GS + L+V S TA PT P K DNP +S K+KS
Sbjct: 193 ---KKSYRPPGGSGIGRSS---ELAVTPS-TAKCQTPTGIPSKEKSDNPSPSSSRKVKSY 245
Query: 320 CKTVVPPPSKK--PRYSESSGTQGNNSTKKGPEQSELYAQLSKSSVLTGGHEERKTKRPS 377
+ ++P K P S N ++ + QS ++ + S +G + ++ S
Sbjct: 246 GQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRS-RSGSQKRTHSRVRS 304
Query: 378 LRLFGDHDYCQSINSKTEILINISQELQDSRQLENKDVSSDWQGQICSSTDSDQCYLRET 437
+H +S ++ IL + + Q + K S Q + S +
Sbjct: 305 HSWKRNHSRARS-RTRKGILSQMGRHSQSRSHSKGK---SQNQSRTPRRGRSHNWSRNPS 360
Query: 438 LEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADKTGELRDSDFSNEQFSKL 497
E S S S++++ D + K G + + D + + + S+
Sbjct: 361 KERSHSHSRSSSKER--DHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRS 418
Query: 498 PMFINSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSP--CRD---SVS 552
P D S S N + CS SP RD S S
Sbjct: 419 PYKAR---------DRSRSRSP---------------NKARDCSRSRSPYKARDRSRSRS 454
Query: 553 PPKSLFSQRPQ-----RMRSRSRSFSRHRSCSR--SPYSRSRSRSPGSRSSSRSCYYYES 605
P K+ R + R RSRSRS S+ R S+ SP R S S R C S
Sbjct: 455 PNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRS 514
Query: 606 SHYRHRTHRNS--PLYVRSR--SRSPYSRRPRYDSY---EEYQHERLKREEYRREYEKRE 658
S + R HR S P R R SRSP R R S EE +H + + R+ +R
Sbjct: 515 SS-KERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERD-RRRW 572
Query: 659 SERAKQRERQRQKAIEERR 677
+K+RER++ ++ E R
Sbjct: 573 RSPSKERERRQSRSSSEER 591
Score = 40.0 bits (92), Expect = 0.009
Identities = 46/132 (34%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 547 CRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYS---RSRSRSPGSRSSSRSCYYY 603
CR S S K +R R RSRS S R R SRSP RS+SRSP R
Sbjct: 509 CRQSRSSSK----ERDHR-RSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQS--R 561
Query: 604 ESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEK-RESERA 662
S R R SP S+ R RR S EE H R + + Y + R S +
Sbjct: 562 SPSKERDRRRWRSP----SKER---ERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKE 614
Query: 663 KQRERQRQKAIE 674
K R R + E
Sbjct: 615 KAHSRSRTPSKE 626
Score = 35.0 bits (79), Expect = 0.27
Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 3/161 (1%)
Query: 528 TQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSR 587
T + SL P+ S + S KS ++R R SRS R ++ + S S
Sbjct: 39 TPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDT 98
Query: 588 SRSPGSRSSSRSCYYYESSHYRHRT--HRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERL 645
S S++S C+ +H R RT R S RS SR+ R R R+
Sbjct: 99 RTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMASRV 158
Query: 646 KREEYRREYEKRESERAKQRERQRQKAIEERRVIYVGKIRP 686
R ++ R + R R+++ + R + RP
Sbjct: 159 -RTPTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYRP 198
Score = 32.3 bits (72), Expect = 1.8
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPL 618
S+ +R +SRS S R S SRSP +S P R+SS+ E +H R RT
Sbjct: 576 SKERERRQSRSSSEERDHSRSRSPNKQSGYSRP--RASSK-----EKAHSRSRTPSKEGN 628
Query: 619 YVRSRSRSPYS 629
+ +SR+ S S
Sbjct: 629 HSQSRTSSKES 639
Score = 31.6 bits (70), Expect = 3.0
Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 14/184 (7%)
Query: 203 QRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCTSKKKSHTQSQS-----QHLQAKPTT 257
+ R C + D P++ R + + +K++ +QS+S +H Q++
Sbjct: 505 KERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSR--- 561
Query: 258 LSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFRASPKLK 317
+P D + +K ER S S + +P ++ P RAS K K
Sbjct: 562 -----SPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRP-RASSKEK 615
Query: 318 SSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQLSKSSVLTGGHEERKTKRPS 377
+ ++ P S +S + + S P + +++S L+ KT S
Sbjct: 616 AHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHS 675
Query: 378 LRLF 381
F
Sbjct: 676 PSTF 679
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 56.2 bits (134), Expect = 1e-07
Identities = 53/167 (31%), Positives = 72/167 (43%), Gaps = 11/167 (6%)
Query: 525 WDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYS 584
W +++ S S S R + +S +R RSRSR+ +R RS SR+P
Sbjct: 542 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTR 601
Query: 585 R-SRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHE 643
R SRSR+P R SRS + R R+ SP+ RSRSRSP R R S +
Sbjct: 602 RRSRSRTPARRGRSRS-----RTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRG 656
Query: 644 RLKREEYRREYEKRESERAKQRERQRQKAIEERRVIYVGKIRPDTTR 690
R + R R A++ R R + R G+ R T R
Sbjct: 657 RSRSRTPARRGRSRSRTPARRSGRSRSRTPARR-----GRSRSRTPR 698
Score = 54.3 bits (129), Expect = 4e-07
Identities = 49/127 (38%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 555 KSLFSQRPQRMRS-------RSRSFSRHRSCSRSPYS--RSRSRSPGSRSSSRSCYYYES 605
+S QRP RS RSRS R RS SRSP + RSRSR+P R SRS
Sbjct: 533 RSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRS-----R 587
Query: 606 SHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQR 665
+ R R+ +P RSRSR+P +RR R S + R RR R R R
Sbjct: 588 TPARRRSRSRTPTRRRSRSRTP-ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGR 646
Query: 666 ERQRQKA 672
R R A
Sbjct: 647 SRSRTPA 653
Score = 50.4 bits (119), Expect = 6e-06
Identities = 128/590 (21%), Positives = 208/590 (35%), Gaps = 97/590 (16%)
Query: 120 DNEASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECS---------GLSTQNHA 170
D+ P ++P P + L L P + S +E S L ++ +
Sbjct: 1481 DSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRER-SGSESSVDQKTVARTPLGQRSRS 1539
Query: 171 NHNHRIRTNPAIVKTENSWSN-----KAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKP 225
+ + P+ E S S+ KAK+ ++ R S + D P
Sbjct: 1540 GSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEV------DSKSRLSP 1593
Query: 226 TENRNSS----RDKCTSKKKSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIE 281
+R+ S +DK + ++ + S S P +LP S + KG + E
Sbjct: 1594 RRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKG---RGPSPE 1650
Query: 282 RTLSVELSGTAGLTPPTTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQG 341
+ S E S P PP R+SP+ K+ +T PP ++
Sbjct: 1651 GSSSTESS-------PEHPPKSRTARRGSRSSPEPKTKSRT---PPRRR----------- 1689
Query: 342 NNSTKKGPEQSELYAQLSKSSVLTGGHEERKTKRP-----SLRLFGDHDYCQSINSKTEI 396
S++ PE + A+LS+ S E +++ P S + +S +S+
Sbjct: 1690 --SSRSSPELTRK-ARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRR 1746
Query: 397 LINISQELQDSRQLENKDVSSDWQGQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQ 456
+ + SR+ + S +G S + S + R T + S ST ++ Q
Sbjct: 1747 SASSPRTKTTSRR--GRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRS 1804
Query: 457 EIRAELNKH----FGHPSQAVFDDEADKTGELRDSDFSNEQFSKLPMFINSGLAMDGLFD 512
R+ + + G+ S++ E+ +T R G +
Sbjct: 1805 RSRSRVTRRRRGGSGYHSRSPARQESSRTSSRR----------------RRGRSRTPPTS 1848
Query: 513 DSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSF 572
S PW ++S + SP S ++ R +R RSR+
Sbjct: 1849 RKRSRSRTSPAPWKRSRSRA------------SPATHRRSRSRTPLISR-RRSRSRTSPV 1895
Query: 573 SRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSP-LYVRSRSRSPYSRR 631
SR RS SR+ +R RSRS S S R R R+ +P RSRSR+P R
Sbjct: 1896 SRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTR 1955
Query: 632 PRYDSYEEYQHERLKREE----YRREYEKRESERAKQRERQRQKAIEERR 677
R S R R RR R S ++R R R + RR
Sbjct: 1956 RRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRR 2005
Score = 48.1 bits (113), Expect = 3e-05
Identities = 43/124 (34%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPY---SRSRSRSPGSRSSSRSCYYYESSHYRHRT--- 612
S+ P R RSR+RS R RS SRSP RSRSR+P R SRS R RT
Sbjct: 617 SRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPAR 676
Query: 613 ------HRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRE 666
R RSRSR+P R R S + + R + K R
Sbjct: 677 RSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRT 736
Query: 667 RQRQ 670
QR+
Sbjct: 737 SQRR 740
Score = 45.8 bits (107), Expect = 2e-04
Identities = 112/470 (23%), Positives = 162/470 (34%), Gaps = 46/470 (9%)
Query: 234 DKCTSKKKSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAG 293
D K+ T+S S H ++ + ++ S N SP + + RT S E S +A
Sbjct: 1366 DPSLDMKEQSTRS-SGHSSSELSPDAVEKAGMSSNQSISSPVLD-AVPRTPSRERSSSAS 1423
Query: 294 LTP-----PTTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSG--------TQ 340
P TP ++ + SP L+ T PS+ S G ++
Sbjct: 1424 SPEMKDGLPRTPSRRSRSGS----SPGLRDGSGT----PSRHSLSGSSPGMKDIPRTPSR 1475
Query: 341 GNNSTKKGPEQSEL-YAQLSKSSVLTGGHEERKTKRPSLRLFGDHDYCQSINSKTEILIN 399
G + PE L +S + K P G S++ KT
Sbjct: 1476 GRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSGSES---SVDQKTVARTP 1532
Query: 400 ISQELQDSRQLENKDVSSDWQGQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIR 459
+ Q + E DV Q S +DS +T +Q S + ++ D + R
Sbjct: 1533 LGQRSRSGSSQE-LDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEV-DSKSR 1590
Query: 460 AELNKHFGHPSQAVFDDEADKTGELRDSDFSNEQFSKLPMFI----NSGLAMDGLFDDSE 515
+ S V D SD S E + P + SG + G E
Sbjct: 1591 LSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPE 1650
Query: 516 DESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRH 575
S S P +S + S S P S +PP+ S+ + ++R R
Sbjct: 1651 GSSSTESSPEHPPKSRTARRGSRSSPE---PKTKSRTPPRRRSSRSSPELTRKARLSRRS 1707
Query: 576 RSCSRSPYSRSRS-----RSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSR 630
RS S SP +RSR+ RSP S SS SS R R RSP S
Sbjct: 1708 RSASSSPETRSRTPPRHRRSP-SVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSP-SP 1765
Query: 631 RPRYDSYEEYQHERLKREEYRREYEKRESE---RAKQRERQRQKAIEERR 677
+PR + R K RR S+ R +QR R R + RR
Sbjct: 1766 KPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRR 1815
Score = 44.3 bits (103), Expect = 5e-04
Identities = 55/193 (28%), Positives = 76/193 (39%), Gaps = 29/193 (15%)
Query: 529 QSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRP-----------QRMRSRSRS----FS 573
+S S+ + P+ S +S R S S P++ + R QR RSRSR +
Sbjct: 1726 RSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTT 1785
Query: 574 RHRSCSRSPYS------RSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSP 627
R R S S S RSRSRS +R Y+ S R + R S R RSR+P
Sbjct: 1786 RRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTP 1845
Query: 628 YSRRPRYDSYEEYQHERLKREEYRREYEKRESER----AKQRERQRQKAIEERRVIYVGK 683
+ R R S + R +R R +++R R R + RR +
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRR----SR 1901
Query: 684 IRPDTTRTELRDR 696
R TR R R
Sbjct: 1902 SRTSVTRRRSRSR 1914
Score = 42.4 bits (98), Expect = 0.002
Identities = 46/141 (32%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 561 RPQRMRSRSRSFSRHRSCSRSPYS----RSRSRSPGSRSSSRS-CYYYESSHYRHRTHRN 615
R +R +S S + SR SRSP + RSRSR+P R SRS + S R R+
Sbjct: 466 RAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRS 525
Query: 616 SPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEE 675
R RSRSP +RP + Q R + RR S + R R R A
Sbjct: 526 RSPQRRGRSRSP--QRPGWSRSRNTQ-RRGRSRSARRGRSHSRSPATRGRSRSRTPARRG 582
Query: 676 RRVIYVGKIRPDTTRTELRDR 696
R R +RT R R
Sbjct: 583 RSRSRTPARRRSRSRTPTRRR 603
Score = 40.0 bits (92), Expect = 0.009
Identities = 39/111 (35%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 563 QRMRSRSRSFSRHRSCSR-SPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYV- 620
+R RSR+ +R RS SR SP +R RSRS S + R S R R+ +P +
Sbjct: 1968 RRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR 2027
Query: 621 -RSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYE-KRESERAKQRERQR 669
RSRSR+P R R S R R R KR R+ R+R
Sbjct: 2028 RRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRR 2078
Score = 36.2 bits (82), Expect = 0.12
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 559 SQRPQRMRSRSRSFSRH-RSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSP 617
S+ P+R RSRSRS R RS SR+P R RS S R + +S R R++ +SP
Sbjct: 694 SRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKS-----RTSQRRSRSN-SSP 747
Query: 618 LYVRSRSRSPYSR 630
+SR S SR
Sbjct: 748 EMKKSRISSRRSR 760
Score = 32.7 bits (73), Expect = 1.4
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 537 SPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSS 596
S S SS S + +S +SL P + R RS S P ++SR+ SRSS
Sbjct: 759 SRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSS 818
Query: 597 SRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQ-HERLKREEYRREYE 655
S +S ++H +S + + +S +P PR S Q +E+ + R +E
Sbjct: 819 SSPPPKQKSKTPSRQSHSSSSPHPKVKSGTP----PRQGSITSPQANEQSVTPQRRSCFE 874
Query: 656 KRESERAKQRERQR 669
K R R
Sbjct: 875 SSPDPELKSRTPSR 888
Score = 32.3 bits (72), Expect = 1.8
Identities = 30/74 (40%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 563 QRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRS 622
+R RSRSR+ R RS SRS R RS S + RS SS R R S RS
Sbjct: 688 RRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRS----GSSSERKNKSRTSQRRSRS 743
Query: 623 RSRSPYSRRPRYDS 636
S SP ++ R S
Sbjct: 744 NS-SPEMKKSRISS 756
Score = 31.6 bits (70), Expect = 3.0
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 529 QSYSLFNVSPSCSSFNSPCRDSVSPPK----SLFSQRPQRMRS------RSRSFSRHRSC 578
QS+S + P S P + S++ P+ S+ QR S +SR+ SRH SC
Sbjct: 833 QSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRH-SC 891
Query: 579 SRSPYSRSRSRSPGSRSSSRS 599
S S R +S +P +S SRS
Sbjct: 892 SGSSPPRVKSSTPPRQSPSRS 912
Score = 30.8 bits (68), Expect = 5.2
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGS--------RSSSRSCYYYESSHYRH 610
S P+R R +S +HRS S S + RS +P S R SRS S H
Sbjct: 202 SSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAH 261
Query: 611 RT----HRNSPLYVRSRSRS 626
R+ +S RSRSRS
Sbjct: 262 RSTSADSASSSDTSRSRSRS 281
Score = 30.8 bits (68), Expect = 5.2
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 524 PWDGTQSYSLFNVSPSCSSFNS------------PCRDSVSPPKSLFSQRPQRMRSRSRS 571
P G+QS S V+ + SS P D PP S +Q+P + + +
Sbjct: 2468 PVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPA 2527
Query: 572 FSRHRSCSRSPYSRSRSRSPGSRSSSRS 599
R S S S S S S S S SSS S
Sbjct: 2528 KERRSSSSSSSSSSSSSSSSSSSSSSSS 2555
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 55.1 bits (131), Expect = 3e-07
Identities = 63/192 (32%), Positives = 80/192 (41%), Gaps = 27/192 (14%)
Query: 442 KQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADKTGELRDSDFSNEQFSKLPMFI 501
K V P S K+++D+E E S+ D++ D+ D+D S
Sbjct: 137 KAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED----DADLSKYNLDA----- 187
Query: 502 NSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQR 561
+ ED + K S ++S S + S S SS S R S S +S S
Sbjct: 188 ----------SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSR-SRSRSRSRSSSS 236
Query: 562 PQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVR 621
Q SRSRS SR RS SR SRS SRS SS R Y SS R + S R
Sbjct: 237 SQ---SRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRS----R 289
Query: 622 SRSRSPYSRRPR 633
SRS S R+ R
Sbjct: 290 SRSSSSGDRKKR 301
Score = 53.9 bits (128), Expect = 6e-07
Identities = 54/148 (36%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 512 DDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQ-RPQRMRSRSR 570
D+ ED++D Y D ++ N S S R S S S S R RSRSR
Sbjct: 172 DEDEDDADLSKYNLDASEEEDS-NKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSR 230
Query: 571 SFSRHRSCSRS-PYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYS 629
S S S SRS SR RSRS GS+S S S + SS R R++ +S S SP
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSS-------SSSPER 283
Query: 630 RRPRYDSYEEYQHERLKREEYRREYEKR 657
R R S +R KR R E+R
Sbjct: 284 NRKRSRSRSSSSGDRKKRRTRSRSPERR 311
Score = 45.8 bits (107), Expect = 2e-04
Identities = 69/260 (26%), Positives = 101/260 (38%), Gaps = 25/260 (9%)
Query: 416 SSDWQGQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFD 475
++DWQ + CS+ + + R + + + C+T K + +E R F +
Sbjct: 66 ANDWQCKTCSNVN----WARRS-----ECNMCNTPKYAKLEE-RTGYGGGFNERENVEYI 115
Query: 476 DEADKTGELRDSDFSNEQFSKL---PMFINSGLAMDGLFDDSEDESDKLS-YPWDGTQSY 531
+ + GE + +++ P I + + EDE + LS Y D +
Sbjct: 116 EREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDE 175
Query: 532 SLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYS-RSRSRS 590
S +N + K S R R +SRS S SR S S SP S RSRSRS
Sbjct: 176 D----DADLSKYNLDASEEEDSNKKK-SNRRSRSKSRS-SHSRSSSRSSSPSSSRSRSRS 229
Query: 591 PGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPY-SRRPRYDSYEEYQHERLKREE 649
SSS SS R R+ + RS SRS S PR SY + +
Sbjct: 230 RSRSSSSSQSRSRSSSRERSRSRGSKS---RSSSRSHRGSSSPRKRSYSSSSSSPERNRK 286
Query: 650 YRREYEKRESERAKQRERQR 669
R +R K+R R R
Sbjct: 287 RSRSRSSSSGDRKKRRTRSR 306
Score = 37.4 bits (85), Expect = 0.055
Identities = 37/96 (38%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 514 SEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQR---PQRMRSRSR 570
S S S ++ S S S SS S R S SP K +S P+R R RSR
Sbjct: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH-RGSSSPRKRSYSSSSSSPERNRKRSR 289
Query: 571 SFS-------RHRSCSRSPYSRSRSRSPGSRSSSRS 599
S S + R+ SRSP R RS S S S SRS
Sbjct: 290 SRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRS 325
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 55.1 bits (131), Expect = 3e-07
Identities = 63/192 (32%), Positives = 80/192 (41%), Gaps = 27/192 (14%)
Query: 442 KQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADKTGELRDSDFSNEQFSKLPMFI 501
K V P S K+++D+E E S+ D++ D+ D+D S
Sbjct: 137 KAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED----DADLSKYNLDA----- 187
Query: 502 NSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQR 561
+ ED + K S ++S S + S S SS S R S S +S S
Sbjct: 188 ----------SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSR-SRSRSRSRSSSS 236
Query: 562 PQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVR 621
Q SRSRS SR RS SR SRS SRS SS R Y SS R + S R
Sbjct: 237 SQ---SRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRS----R 289
Query: 622 SRSRSPYSRRPR 633
SRS S R+ R
Sbjct: 290 SRSSSSGDRKKR 301
Score = 45.8 bits (107), Expect = 2e-04
Identities = 69/260 (26%), Positives = 101/260 (38%), Gaps = 25/260 (9%)
Query: 416 SSDWQGQICSSTDSDQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFD 475
++DWQ + CS+ + + R + + + C+T K + +E R F +
Sbjct: 66 ANDWQCKTCSNVN----WARRS-----ECNMCNTPKYAKLEE-RTGYGGGFNERENVEYI 115
Query: 476 DEADKTGELRDSDFSNEQFSKL---PMFINSGLAMDGLFDDSEDESDKLS-YPWDGTQSY 531
+ + GE + +++ P I + + EDE + LS Y D +
Sbjct: 116 EREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDE 175
Query: 532 SLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYS-RSRSRS 590
S +N + K S R R +SRS S SR S S SP S RSRSRS
Sbjct: 176 D----DADLSKYNLDASEEEDSNKKK-SNRRSRSKSRS-SHSRSSSRSSSPSSSRSRSRS 229
Query: 591 PGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPY-SRRPRYDSYEEYQHERLKREE 649
SSS SS R R+ + RS SRS S PR SY + +
Sbjct: 230 RSRSSSSSQSRSRSSSRERSRSRGSKS---RSSSRSHRGSSSPRKRSYSSSSSSPERNRK 286
Query: 650 YRREYEKRESERAKQRERQR 669
R +R K+R R R
Sbjct: 287 RSRSRSSSSGDRKKRRTRSR 306
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 54.3 bits (129), Expect = 4e-07
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 554 PKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPG-SRSSSRSCYYYESSHYRHRT 612
P+S S + RSRS + S+ RS S+S R RS+S SRS +RS S + R
Sbjct: 295 PESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRS-----RSRQKDRR 349
Query: 613 HRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKA 672
SP RS+SR R R H R KR++ R + +++E + K RE++R++
Sbjct: 350 RSKSPHKKRSKSRERRKSRSR-------SHSRDKRKDTREKIKEKERVKEKDREKERERE 402
Query: 673 IEERRVIYVGKIRPDTTRTELRDR 696
E + GK D + +DR
Sbjct: 403 KEREKEKERGK-NKDRDKEREKDR 425
Score = 46.6 bits (109), Expect = 9e-05
Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 15/178 (8%)
Query: 515 EDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQ-RMRSRSRSFS 573
E ES K + G + S S S +S + S S +S R + R + R RS S
Sbjct: 294 EPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKS 353
Query: 574 RHRSCSRSPY---SRSRSRSPGSRSSSRSCYYY---------ESSHYRHRTHRNSPLYVR 621
H+ S+S SRSRS S R +R E R + +
Sbjct: 354 PHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGK 413
Query: 622 SRSRSPYSRRPRY-DSYEEYQHERLKREEYRREYEK-RESERAKQRERQRQKAIEERR 677
++ R + R D ++ + ER K E R+ EK +E ++ K+RE+ R K I+E+R
Sbjct: 414 NKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKR 471
Score = 45.4 bits (106), Expect = 2e-04
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSP-----YSRSRSRSPGSRSSSRSCYY 602
+ S +PP+S + R R SR R R RS SRSP R SRSP RS ++
Sbjct: 475 KKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKK--- 531
Query: 603 YESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHER----LKREEYRREYEKRE 658
+ + R H + R R RS R+ D + + E+ LK +E+ +E +
Sbjct: 532 -DKKREKERDHISER---RERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSV 587
Query: 659 SERAKQRERQRQKAIEERRVIYVGKIRPD----TTRTE 692
S+ ++ R EE ++ + G + + +T+TE
Sbjct: 588 SKEVDDKDAPR---TEENKIQHNGNCQLNEENLSTKTE 622
Score = 35.0 bits (79), Expect = 0.27
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 563 QRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRS 622
+R + RS+ R + + RS + RS S S R R R S RS
Sbjct: 458 EREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSS---------RERRRRRS----RS 504
Query: 623 RSRSPYSRRP--RYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEERRVIY 680
SRSP + + R S R K+++ R EK +++RER+R ++ +
Sbjct: 505 SSRSPRTSKTIKRKSSRSPSPRSRNKKDKKR---EKERDHISERRERERSTSMRKSSNDR 561
Query: 681 VGKIRPDTTRTELRDR 696
GK + + T L+++
Sbjct: 562 DGKEKLEKNSTSLKEK 577
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 54.3 bits (129), Expect = 4e-07
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 554 PKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPG-SRSSSRSCYYYESSHYRHRT 612
P+S S + RSRS + S+ RS S+S R RS+S SRS +RS S + R
Sbjct: 179 PESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRS-----RSRQKDRR 233
Query: 613 HRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKA 672
SP RS+SR R R H R KR++ R + +++E + K RE++R++
Sbjct: 234 RSKSPHKKRSKSRERRKSRSR-------SHSRDKRKDTREKIKEKERVKEKDREKERERE 286
Query: 673 IEERRVIYVGKIRPDTTRTELRDR 696
E + GK D + +DR
Sbjct: 287 KEREKEKERGK-NKDRDKEREKDR 309
Score = 46.6 bits (109), Expect = 9e-05
Identities = 50/178 (28%), Positives = 76/178 (42%), Gaps = 15/178 (8%)
Query: 515 EDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQ-RMRSRSRSFS 573
E ES K + G + S S S +S + S S +S R + R + R RS S
Sbjct: 178 EPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKS 237
Query: 574 RHRSCSRSPY---SRSRSRSPGSRSSSRSCYYY---------ESSHYRHRTHRNSPLYVR 621
H+ S+S SRSRS S R +R E R + +
Sbjct: 238 PHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGK 297
Query: 622 SRSRSPYSRRPRY-DSYEEYQHERLKREEYRREYEK-RESERAKQRERQRQKAIEERR 677
++ R + R D ++ + ER K E R+ EK +E ++ K+RE+ R K I+E+R
Sbjct: 298 NKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKR 355
Score = 45.4 bits (106), Expect = 2e-04
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSP-----YSRSRSRSPGSRSSSRSCYY 602
+ S +PP+S + R R SR R R RS SRSP R SRSP RS ++
Sbjct: 359 KKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKK--- 415
Query: 603 YESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHER----LKREEYRREYEKRE 658
+ + R H + R R RS R+ D + + E+ LK +E+ +E +
Sbjct: 416 -DKKREKERDHISER---RERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSV 471
Query: 659 SERAKQRERQRQKAIEERRVIYVGKIRPD----TTRTE 692
S+ ++ R EE ++ + G + + +T+TE
Sbjct: 472 SKEVDDKDAPR---TEENKIQHNGNCQLNEENLSTKTE 506
Score = 35.0 bits (79), Expect = 0.27
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 563 QRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRS 622
+R + RS+ R + + RS + RS S S R R R S RS
Sbjct: 342 EREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSS---------RERRRRRS----RS 388
Query: 623 RSRSPYSRRP--RYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEERRVIY 680
SRSP + + R S R K+++ R EK +++RER+R ++ +
Sbjct: 389 SSRSPRTSKTIKRKSSRSPSPRSRNKKDKKR---EKERDHISERRERERSTSMRKSSNDR 445
Query: 681 VGKIRPDTTRTELRDR 696
GK + + T L+++
Sbjct: 446 DGKEKLEKNSTSLKEK 461
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 53.1 bits (126), Expect = 1e-06
Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 30/137 (21%)
Query: 566 RSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTH------------ 613
RSRSRSFS+ RS SRS SRSR R SRS SRS Y +H R R H
Sbjct: 21 RSRSRSFSKSRSRSRS-LSRSRKRRLSSRSRSRS---YSPAHNRERNHPRVYQNRDFRGH 76
Query: 614 ---RNSPLYVRSRSRSPY-----------SRRPRYDSYEEYQHERLKREEYRREYEKRES 659
P Y R R+R Y + R + +Y + R R R + S
Sbjct: 77 NRGYRRPYYFRGRNRGFYPWGQYNRGGYGNYRSNWQNYRQAYSPRRGRSRSRSPKRRSPS 136
Query: 660 ERAKQRERQRQKAIEER 676
R++ R K+ +R
Sbjct: 137 PRSRSHSRNSDKSSSDR 153
Score = 32.3 bits (72), Expect = 1.8
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 562 PQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRS 599
P+R RSRSRS R S SP SRS SR+ SS RS
Sbjct: 120 PRRGRSRSRSPKRR---SPSPRSRSHSRNSDKSSSDRS 154
Score = 31.6 bits (70), Expect = 3.0
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 564 RMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHY---RHRTHRNSPLYV 620
R+ R + R R S S S RS E +H + + HR +
Sbjct: 718 RLDIERRKKHKERDLKRGKSRESVDSRDSSHSRERSAEKTEKTHKGSKKQKKHRRA---- 773
Query: 621 RSRSRSPYSRRPRYDSY--EEYQHERLKREEYRREYEK 656
R RSRS S SY EEY E +REE ++K
Sbjct: 774 RDRSRSSSSSSQSSHSYKAEEYTEETEEREESTTGFDK 811
Score = 30.8 bits (68), Expect = 5.2
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRHR-SCSRSPYSRSRSRSPGSRSSSRSCYYYESS 606
R+SV S S R RS ++ H+ S + + R+R RS S SSS+S + Y++
Sbjct: 738 RESVDSRDSSHS----RERSAEKTEKTHKGSKKQKKHRRARDRSRSSSSSSQSSHSYKAE 793
Query: 607 HYRHRT 612
Y T
Sbjct: 794 EYTEET 799
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 53.1 bits (126), Expect = 1e-06
Identities = 52/132 (39%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 542 SFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCY 601
SF+ R S S S FS R +R +SRSRS RH+ R YSRS SRS RS SRS
Sbjct: 38 SFSRSSR-SHSRVSSRFSSRSRRSKSRSRSRRRHQRKYRR-YSRSYSRS---RSRSRSRR 92
Query: 602 YYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKR-EEYRREYEKRESE 660
Y E + R + SP RSRSRS R R Y R +R + R E
Sbjct: 93 YRERRYGFTRRYYRSPSRYRSRSRSRSRSRGRSYCGRAYAIARGQRYYGFGRTVYPEEHS 152
Query: 661 RAKQRERQRQKA 672
R + R R R ++
Sbjct: 153 RWRDRSRTRSRS 164
Score = 47.0 bits (110), Expect = 7e-05
Identities = 47/122 (38%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSH 607
+DS S +S S R RSRSRSFSR SR SRS S+S SRS
Sbjct: 16 KDSPSTSRSGGSSRLSS-RSRSRSFSRSSRSHSRVSSRFSSRSRRSKSRSRS-----RRR 69
Query: 608 YRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRER 667
++ + R S Y RSRSRS SRR R Y R YR R R++ R R
Sbjct: 70 HQRKYRRYSRSYSRSRSRS-RSRRYRERRY------GFTRRYYRSPSRYRSRSRSRSRSR 122
Query: 668 QR 669
R
Sbjct: 123 GR 124
Score = 37.4 bits (85), Expect = 0.055
Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 33/130 (25%)
Query: 567 SRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRS 626
S SRS R SRS RSRS S SRS SR SS + R+ R+ +SRSRS
Sbjct: 20 STSRSGGSSRLSSRS---RSRSFSRSSRSHSRV-----SSRFSSRSRRS-----KSRSRS 66
Query: 627 PYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEERRVIYVGKIRP 686
R ++R+Y + ++ R R R + ERR + +
Sbjct: 67 --------------------RRRHQRKYRRYSRSYSRSRSRSRSRRYRERRYGFTRRYYR 106
Query: 687 DTTRTELRDR 696
+R R R
Sbjct: 107 SPSRYRSRSR 116
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 52.8 bits (125), Expect = 1e-06
Identities = 55/147 (37%), Positives = 69/147 (46%), Gaps = 26/147 (17%)
Query: 539 SCSSFNSPCRD----SVSPPKSLF-SQRPQRMRSRSRSFSRHRSCSRSP--------YSR 585
S S +P RD S SP +S S+ R R+RS S+S RS SRS YSR
Sbjct: 1296 SSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSR 1355
Query: 586 SRSRSPGSRSSSRSCYYYESSHYR-HRTHRNSPLYVRSRSRS----PYSRRPRYDSYEEY 640
SRSR SR +RS SS YR +++HR S RSRSRS P+SR Y +Y+ Y
Sbjct: 1356 SRSRGWYSRGRTRS----RSSSYRSYKSHRTSS---RSRSRSSSYDPHSRSRSY-TYDSY 1407
Query: 641 QHERLKREEYRREYEKRESERAKQRER 667
R +R +R R
Sbjct: 1408 YSRSRSRSRSQRSDSYHRGRSYNRRSR 1434
Score = 51.6 bits (122), Expect = 3e-06
Identities = 70/229 (30%), Positives = 93/229 (40%), Gaps = 26/229 (11%)
Query: 443 QVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADKTGELRDSDFSNEQFSKLPMFIN 502
+V +T +++ Q +R E+ ++FD E KT L + E +
Sbjct: 1247 EVKVLTTVPEMKPQGLRIEIKSKNKVRPGSLFD-EVRKTARLNRRPRNQES--------S 1297
Query: 503 SGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRP 562
S DDS+ S S T+S S S S S R S S +S
Sbjct: 1298 SDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTR-SVSYSHSRSRSRSSTSSYRS------ 1350
Query: 563 QRMRSRSRS---FSRHRSCSRSPYSRS-RSRSPGSRSSSRSCYYYESSHYRHRTHRNSPL 618
R SRSRS +SR R+ SRS RS +S SRS SRS Y H R R++
Sbjct: 1351 -RSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSY--DPHSRSRSYTYDSY 1407
Query: 619 YVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRER 667
Y RSRSR SR R DSY + + R ES+R+ R
Sbjct: 1408 YSRSRSR---SRSQRSDSYHRGRSYNRRSRSCRSYGSDSESDRSYSHHR 1453
Score = 45.1 bits (105), Expect = 3e-04
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 530 SYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSR 589
+YSL N+ + SS S + +R + S ++S++ S RSRSR
Sbjct: 649 TYSLANIKETGSS-------------SSYHKREKNSESDQSTYSKYSDRSSESSPRSRSR 695
Query: 590 SPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREE 649
S SRS SRS + R R+ +S SRSRSP SR + Y + H + R
Sbjct: 696 SSRSRSYSRS-------YTRSRSLASS----HSRSRSPSSRSHSRNKYSD--HSQCSRSS 742
Query: 650 YRREYEKRESERAKQRERQRQK 671
+ RAK+R R K
Sbjct: 743 SYTSISSDDGRRAKRRLRSSGK 764
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 55/180 (30%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYES-- 605
R S S P+S R R RS SRS++R RS + S SRSRSP SRS SR+ Y S
Sbjct: 684 RSSESSPRS--RSRSSRSRSYSRSYTRSRSLASS---HSRSRSPSSRSHSRNKYSDHSQC 738
Query: 606 ------------------------------SHYRHRTHRNSPL---YVRSRSRS------ 626
SH +H + L YV+ R RS
Sbjct: 739 SRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHKKHSSSSEKTLHSKYVKGRDRSSCVRKY 798
Query: 627 -------PYSRRPRYDSYEEYQ--HERLKREEYRREYEKRESERAKQRERQRQKAIEERR 677
YS S + Q E+ K+ + R + K+E R +++ + ++ ++
Sbjct: 799 SESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEKNRGEEKSKSERECPHSKK 858
Score = 34.3 bits (77), Expect = 0.47
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 537 SPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSS 596
S S SS +S RD K + S R RS S +S YSR SR SR++
Sbjct: 487 SSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQS-----YSRGSSR---SRTA 538
Query: 597 SRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEK 656
S+S SSH R R+ S +S R S+ PR + + +++ +K E R +
Sbjct: 539 SKS-----SSHSRSRSKSRSS--SKSGHRKRASKSPRKTASQLSENKPVKTEPLRATMAQ 591
Query: 657 RES 659
E+
Sbjct: 592 NEN 594
Score = 30.8 bits (68), Expect = 5.2
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 588 SRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKR 647
+ S GS SSS S ESS H RSR R + RRP+ ++ + E
Sbjct: 193 THSEGSDSSSNSSSSSESSSESELEHE------RSRRRK-HKRRPKVKRSKKRRKEASSS 245
Query: 648 EEYRREY---EKRESERAKQRERQR--QKAIEERRVIYVGKIRP 686
EE R ++ K SER+ E++ A E+ V+ +I P
Sbjct: 246 EEPRNKHAMNPKGHSERSDTNEKRSVDSSAKREKPVVRPEEIPP 289
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 52.8 bits (125), Expect = 1e-06
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 560 QRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLY 619
+R +R R R R R SRSRSR SR+S R C R R H+ S
Sbjct: 269 ERKRRREEEEREKERARDRERRKRSRSRSRH-SSRTSDRRC-------SRSRDHKRSRSR 320
Query: 620 VRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRES--ERAKQRERQRQKAIEER 676
R RSRS RR R E +H R+ R + R+S R+K R+R++ + +E+
Sbjct: 321 ERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEK 379
Score = 50.1 bits (118), Expect = 8e-06
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRH------RSCSRS---PYSRSRSRSPGSRSSSR 598
R+ K R +R RSRSR SRH R CSRS SRSR R R
Sbjct: 274 REEEEREKERARDRERRKRSRSR--SRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRR 331
Query: 599 SCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRE 658
++ S +HR+ +SR R Y R + S + Q + K +E R +K+
Sbjct: 332 RSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSK--SRDREQDRKSKEKEKRGSDDKKS 389
Query: 659 SERAKQRERQRQKAIEERR 677
S ++ RE+Q + E +
Sbjct: 390 SVKSGSREKQSEDTNTESK 408
Score = 37.4 bits (85), Expect = 0.055
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 630 RRPRYDSYEEYQHERLKRE-EYRREYEKRESERAKQRERQRQKAIEERRVIYVGKIRPDT 688
++ R + +E + ER +RE + RRE E+RE ERA+ RER+++ R R
Sbjct: 251 KQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSR 310
Query: 689 TRTELRDR 696
+R R R
Sbjct: 311 SRDHKRSR 318
Score = 34.7 bits (78), Expect = 0.36
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 638 EEYQHERLKREEYRREYEKRESERAK-QRERQRQKAIEER 676
E + ERLK+E+ RE ++E ER + +RER+R++ EER
Sbjct: 240 EPDRDERLKKEKQEREEREKEREREREERERKRRREEEER 279
Score = 32.3 bits (72), Expect = 1.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 620 VRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEER 676
+R R+ P D E + E+ +REE +E E+ ER ++R R+ ++ +ER
Sbjct: 234 LRKRTEEP-------DRDERLKKEKQEREEREKEREREREERERKRRREEEEREKER 283
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 52.8 bits (125), Expect = 1e-06
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 560 QRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLY 619
+R +R R R R R SRSRSR SR+S R C R R H+ S
Sbjct: 269 ERKRRREEEEREKERARDRERRKRSRSRSRH-SSRTSDRRC-------SRSRDHKRSRSR 320
Query: 620 VRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRES--ERAKQRERQRQKAIEER 676
R RSRS RR R E +H R+ R + R+S R+K R+R++ + +E+
Sbjct: 321 ERRRSRSRDRRRSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEK 379
Score = 50.1 bits (118), Expect = 8e-06
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRH------RSCSRS---PYSRSRSRSPGSRSSSR 598
R+ K R +R RSRSR SRH R CSRS SRSR R R
Sbjct: 274 REEEEREKERARDRERRKRSRSR--SRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRR 331
Query: 599 SCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRE 658
++ S +HR+ +SR R Y R + S + Q + K +E R +K+
Sbjct: 332 RSRSHDRSERKHRSRSRDRRRSKSRDRKSYKHRSK--SRDREQDRKSKEKEKRGSDDKKS 389
Query: 659 SERAKQRERQRQKAIEERR 677
S ++ RE+Q + E +
Sbjct: 390 SVKSGSREKQSEDTNTESK 408
Score = 37.4 bits (85), Expect = 0.055
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 630 RRPRYDSYEEYQHERLKRE-EYRREYEKRESERAKQRERQRQKAIEERRVIYVGKIRPDT 688
++ R + +E + ER +RE + RRE E+RE ERA+ RER+++ R R
Sbjct: 251 KQEREEREKEREREREERERKRRREEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSR 310
Query: 689 TRTELRDR 696
+R R R
Sbjct: 311 SRDHKRSR 318
Score = 34.7 bits (78), Expect = 0.36
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 638 EEYQHERLKREEYRREYEKRESERAK-QRERQRQKAIEER 676
E + ERLK+E+ RE ++E ER + +RER+R++ EER
Sbjct: 240 EPDRDERLKKEKQEREEREKEREREREERERKRRREEEER 279
Score = 32.3 bits (72), Expect = 1.8
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 620 VRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEER 676
+R R+ P D E + E+ +REE +E E+ ER ++R R+ ++ +ER
Sbjct: 234 LRKRTEEP-------DRDERLKKEKQEREEREKEREREREERERKRRREEEEREKER 283
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 52.0 bits (123), Expect = 2e-06
Identities = 58/200 (29%), Positives = 84/200 (42%), Gaps = 22/200 (11%)
Query: 558 FSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSP 617
+ +R R SRS S +R +RSRS+ RS S+S ES R+ R
Sbjct: 9 YGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRH- 67
Query: 618 LYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEERR 677
Y RSRSRS RR R SY +YRR + S + +R +A +
Sbjct: 68 -YTRSRSRSRSHRRSRSRSYS---------RDYRRRHSHSHSPMSTRRRHVGNRANPDPN 117
Query: 678 -VIYVGKIRPDTTRTELRDRFEVFGEIEECTV-----NLRDDGDSYGFITYRYTCDAFAA 731
+ V + TT +LR+ F +G I + ++ + R G + F+ + DA A
Sbjct: 118 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG--FAFVYFENVDDAKEA 175
Query: 732 LE--NGYTL-RRSNETDFEL 748
E NG L R DF +
Sbjct: 176 KERANGMELDGRRIRVDFSI 195
Score = 46.2 bits (108), Expect = 1e-04
Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 537 SPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRS--CSRSPYSRSRSRSPG-S 593
S S R + + +S R R +SRSRS SR RS SR Y+RSRSRS
Sbjct: 20 SGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHR 79
Query: 594 RSSSRSCYYYESSHYRHRTHRNSPLYVRSR 623
RS SRS Y + R +H +SP+ R R
Sbjct: 80 RSRSRS---YSRDYRRRHSHSHSPMSTRRR 106
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 51.6 bits (122), Expect = 3e-06
Identities = 104/499 (20%), Positives = 199/499 (39%), Gaps = 67/499 (13%)
Query: 227 ENRNSSRDKCTSKKKSHTQSQSQHLQAKPTTL----SLPLTPES-----PNDPKGSPFEN 277
+++ + + SKK + ++S++++L+A+P + +P PE+ + PK E
Sbjct: 240 KHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSPPKADEKER 299
Query: 278 KTIERTLSVELSGTAGLTPPTTPPHKANQDNPF-RASPKLKSSCKTVVPPPSK---KPRY 333
K ER E + PP + P + R+ K+K PS+ + R+
Sbjct: 300 KNRERERERECN------PPNSQPASYQRRLLVTRSGRKIKGRGPRRYRTPSRSRSRDRF 353
Query: 334 SESSGT-----QGNNSTKKGPEQSELYAQLSKSSVLTGGHEERKTKRPSLRLFGDH-DYC 387
S + + + E + + KS + +R R R DH +
Sbjct: 354 RRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKENQRSPVRVKERKITDHRNVS 413
Query: 388 QSINSKTEILINISQELQDSRQLE---NKDVSSDWQGQICSSTDSDQCYLRETLEASKQV 444
+S N K E + +S++ + N + ++ ++ S ++ E SK
Sbjct: 414 ESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKS--RSKSKEKSKSK 471
Query: 445 SPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADKTGELRDSDFSNEQFSKLPMFINSG 504
S + +++ +R+ +K H + + ++D G+ ++ S E+ +L N
Sbjct: 472 ERDSKHNRNEEKRMRSR-SKGRDHENVKEKEKQSDSKGKDQERSRSKEKSKQLESKSNE- 529
Query: 505 LAMDGLFDDSED-ESDKLSYPWDGTQSYSL-FNVSPSCSSFNSPCRD---SVSPPKSLFS 559
D S+ E D+ + QS S +++ S+NS R+ S + + S
Sbjct: 530 ------HDHSKSKEKDRRA------QSRSRECDITKGKHSYNSRTRERSRSRDRSRRVRS 577
Query: 560 QRPQRMRSRSRSFSRHRSCSRSPYSRSRS---RSPGSRSSSRSCYYYESSHYRHRTHRNS 616
+ R RSRS+ + R+R RSRS R+P RS S+ R R R+S
Sbjct: 578 RTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKD---------RRRRRRDS 628
Query: 617 PLYVRSRSRSPYSRRPRYDSYE-EYQHERLKREEYRREYEKRESERAKQRERQRQKAIEE 675
R S+S + +Y + E + H + E +R Y K + R+++ +
Sbjct: 629 RSSEREESQS--RNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNSSNNSREKK---AD 683
Query: 676 RRVIYVGKIRPDTTRTELR 694
R KI+ + EL+
Sbjct: 684 RDQSPFSKIKQSSQDNELK 702
Score = 35.0 bits (79), Expect = 0.27
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 565 MRSRSRSFSRHRSCSRSPYSRSRSRSP--GSRSSSRSCYYYESSH----YRHRTHRNSPL 618
+R + R + HR+ S SP ++ +S+S+ +S Y+++ + +
Sbjct: 399 VRVKERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKS 458
Query: 619 YVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYE------KRESERAKQRERQRQKA 672
RS+S+ + R + + +R++ R++E K+ + K +ER R K
Sbjct: 459 KSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQERSRSK- 517
Query: 673 IEERRVIYVGKIRPDTTRTELRDR 696
E+ + + D ++++ +DR
Sbjct: 518 -EKSKQLESKSNEHDHSKSKEKDR 540
>gi|24762236 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing A [Homo sapiens]
Length = 312
Score = 51.6 bits (122), Expect = 3e-06
Identities = 39/91 (42%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 541 SSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSC 600
S SP R S SP + S P+R R RS+S RHRS SR RSRS+SPG S
Sbjct: 234 SRSRSPRRRSRSPKRR--SPSPRRERHRSKSPRRHRSRSRDRRHRSRSKSPGHHRS---- 287
Query: 601 YYYESSHYRHRTHRNSPLYVRSRSRSPYSRR 631
+RHR+H SP RS+ SRR
Sbjct: 288 -------HRHRSHSKSP--ERSKKSHKKSRR 309
Score = 37.7 bits (86), Expect = 0.042
Identities = 34/96 (35%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 552 SPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHR 611
SP S R RS + RS SRSP R RSRSP RS S + S R
Sbjct: 209 SPDHRRRSYRDLDKPRRSPTLRYRRSRSRSP--RRRSRSPKRRSPSPRRERHRSKSPRRH 266
Query: 612 THRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKR 647
R+ RSRS+SP R ER K+
Sbjct: 267 RSRSRDRRHRSRSKSPGHHRSHRHRSHSKSPERSKK 302
Score = 37.7 bits (86), Expect = 0.042
Identities = 28/103 (27%), Positives = 38/103 (36%)
Query: 562 PQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVR 621
P R R + R Y RSRSRSP RS S RHR+ R
Sbjct: 210 PDHRRRSYRDLDKPRRSPTLRYRRSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSR 269
Query: 622 SRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQ 664
SR R SR + ++H + R + ++S R +
Sbjct: 270 SRDRRHRSRSKSPGHHRSHRHRSHSKSPERSKKSHKKSRRGNE 312
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 51.2 bits (121), Expect = 4e-06
Identities = 57/163 (34%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 537 SPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYS----------RS 586
S S SS + S S +S R +R RSRSR++SR RS R YS R+
Sbjct: 6 SRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRM-YSRDYRRDYRNNRA 64
Query: 587 RSRSPGSRSSSRSCYY-----YESSHYR---HRTHRNSPLYVRSRSRSP-----YSRRPR 633
R G R R Y Y YR +R H SP RSRSRSP S+R R
Sbjct: 65 MRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSR 124
Query: 634 YDSYEEYQHERLKREEYRRE---YEKRE-SERAKQRERQRQKA 672
S Y+ R R R Y K S+R +E+Q +KA
Sbjct: 125 SRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKA 167
Score = 46.2 bits (108), Expect = 1e-04
Identities = 45/123 (36%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPG---SRSSSRSCYYYESSHYRHRTHRN 615
+ R RS+SRS S RS SRS + R RS SRS SR Y S YR R +RN
Sbjct: 5 NSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRMY--SRDYR-RDYRN 61
Query: 616 SPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEE 675
+ R PY R R Y + R R YR + +R S R+ +R R R ++ +
Sbjct: 62 N-----RAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHS-RSPRRGRSRSRSPKR 115
Query: 676 RRV 678
R V
Sbjct: 116 RSV 118
Score = 38.9 bits (89), Expect = 0.019
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPL 618
S+ P+R RSRSRS R S+ RSRSRS S SSRS SS + SP+
Sbjct: 100 SRSPRRGRSRSRSPKRRSVSSQ----RSRSRSRRSYRSSRS--PRSSSSRSSSPYSKSPV 153
Query: 619 YVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESE 660
R S+ +++ + EE + +EE + +E SE
Sbjct: 154 SKRRGSQEKQTKKAEGELQEESPLKSKSQEEPKDTFEHDSSE 195
Score = 32.7 bits (73), Expect = 1.4
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 29/188 (15%)
Query: 167 QNHANHNHRIRTNPAIVKTENSWSNKAKSICQQQ-KPQRRPCSELLKYLTTNDDPPHTK- 224
+ H+ R R+ K + S +++S ++ + R P S ++ P++K
Sbjct: 97 RRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSS-----SSRSSSPYSKS 151
Query: 225 PTENRNSSRDKCTSKKKSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTL 284
P R S++K T K + Q +S PL +S +PK + FE+ + E
Sbjct: 152 PVSKRRGSQEKQTKKAEGELQEES------------PLKSKSQEEPKDT-FEHDSSESID 198
Query: 285 SV-ELSGTAGLTPPTTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNN 343
+ S T G P + + +P SP + PPS+ S++ +
Sbjct: 199 EFNKSSATCGDIWPGLSAYDXSPRSPHSPSP--------IATPPSQSSSCSDAPMLSTVH 250
Query: 344 STKKGPEQ 351
S K P Q
Sbjct: 251 SAKNTPSQ 258
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 51.2 bits (121), Expect = 4e-06
Identities = 57/163 (34%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 537 SPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYS----------RS 586
S S SS + S S +S R +R RSRSR++SR RS R YS R+
Sbjct: 6 SRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRM-YSRDYRRDYRNNRA 64
Query: 587 RSRSPGSRSSSRSCYY-----YESSHYR---HRTHRNSPLYVRSRSRSP-----YSRRPR 633
R G R R Y Y YR +R H SP RSRSRSP S+R R
Sbjct: 65 MRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSR 124
Query: 634 YDSYEEYQHERLKREEYRRE---YEKRE-SERAKQRERQRQKA 672
S Y+ R R R Y K S+R +E+Q +KA
Sbjct: 125 SRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKA 167
Score = 46.2 bits (108), Expect = 1e-04
Identities = 45/123 (36%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPG---SRSSSRSCYYYESSHYRHRTHRN 615
+ R RS+SRS S RS SRS + R RS SRS SR Y S YR R +RN
Sbjct: 5 NSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRMY--SRDYR-RDYRN 61
Query: 616 SPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEE 675
+ R PY R R Y + R R YR + +R S R+ +R R R ++ +
Sbjct: 62 N-----RAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHS-RSPRRGRSRSRSPKR 115
Query: 676 RRV 678
R V
Sbjct: 116 RSV 118
Score = 38.9 bits (89), Expect = 0.019
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPL 618
S+ P+R RSRSRS R S+ RSRSRS S SSRS SS + SP+
Sbjct: 100 SRSPRRGRSRSRSPKRRSVSSQ----RSRSRSRRSYRSSRS--PRSSSSRSSSPYSKSPV 153
Query: 619 YVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESE 660
R S+ +++ + EE + +EE + +E SE
Sbjct: 154 SKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSE 195
Score = 35.4 bits (80), Expect = 0.21
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 27/187 (14%)
Query: 167 QNHANHNHRIRTNPAIVKTENSWSNKAKSICQQQ-KPQRRPCSELLKYLTTNDDPPHTK- 224
+ H+ R R+ K + S +++S ++ + R P S ++ P++K
Sbjct: 97 RRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSS-----SSRSSSPYSKS 151
Query: 225 PTENRNSSRDKCTSKKKSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTL 284
P R S++K T K + Q +S PL +S +PK + FE+ E
Sbjct: 152 PVSKRRGSQEKQTKKAEGEPQEES------------PLKSKSQEEPKDT-FEHDPSE--- 195
Query: 285 SVELSGTAGLTPPTTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNS 344
S++ + T P + DN SP+ S + PPS+ S++ +S
Sbjct: 196 SIDEFNKSSATSGDIWPGLSAYDN----SPRSPHSPSPIATPPSQSSSCSDAPMLSTVHS 251
Query: 345 TKKGPEQ 351
K P Q
Sbjct: 252 AKNTPSQ 258
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 51.2 bits (121), Expect = 4e-06
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 4/142 (2%)
Query: 539 SCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSR 598
SCS + PC S K +R +R R R + R R + R R R R
Sbjct: 21 SCSHISKPCTQRESERKKERREREKRKREREKERKRERGKKEKKKRKKRERGK-ERERKR 79
Query: 599 SCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHER---LKREEYRREYE 655
+ R + R + R R RR R E + ER +RE R++
Sbjct: 80 KEREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRR 139
Query: 656 KRESERAKQRERQRQKAIEERR 677
K++ + ++RE++R K +R+
Sbjct: 140 KKKRRKERKREKERGKRERKRK 161
Score = 36.6 bits (83), Expect = 0.094
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 597 SRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEK 656
S+ C ES + R R R R R +R R + + ++ K+ E +E E+
Sbjct: 26 SKPCTQRESERKKERREREK----RKREREKERKRER----GKKEKKKRKKRERGKERER 77
Query: 657 RESERAKQRERQRQKAIEERRVIYVGKIRPDTTRTELRDRFE 698
+ ER KQR+ +R+K +R+ + R R E + + E
Sbjct: 78 KRKEREKQRKERREKERRKRKKEKKKRERKQRGRRERKKKKE 119
>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
sapiens]
Length = 869
Score = 50.8 bits (120), Expect = 5e-06
Identities = 57/163 (34%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 537 SPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPYS----------RS 586
S S SS + S S +S R +R RSRSR++SR RS R YS R
Sbjct: 6 SRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRM-YSRDYRRDYRNNRG 64
Query: 587 RSRSPGSRSSSRSCYY-----YESSHYR---HRTHRNSPLYVRSRSRSP-----YSRRPR 633
R G R R Y Y YR +R H SP RSRSRSP S+R R
Sbjct: 65 MRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSR 124
Query: 634 YDSYEEYQHERLKREEYRRE---YEKRE-SERAKQRERQRQKA 672
S Y+ R R R Y K S+R +E+Q +KA
Sbjct: 125 SRSRRSYRSSRSPRSSSSRSSSPYSKSPVSKRRGSQEKQTKKA 167
Score = 45.8 bits (107), Expect = 2e-04
Identities = 45/123 (36%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPG---SRSSSRSCYYYESSHYRHRTHRN 615
+ R RS+SRS S RS SRS + R RS SRS SR Y S YR R +RN
Sbjct: 5 NSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRMY--SRDYR-RDYRN 61
Query: 616 SPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEE 675
+ R PY R R Y + R R YR + +R S R+ +R R R ++ +
Sbjct: 62 N-----RGMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHS-RSPRRGRSRSRSPKR 115
Query: 676 RRV 678
R V
Sbjct: 116 RSV 118
Score = 38.9 bits (89), Expect = 0.019
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPL 618
S+ P+R RSRSRS R S+ RSRSRS S SSRS SS + SP+
Sbjct: 100 SRSPRRGRSRSRSPKRRSVSSQ----RSRSRSRRSYRSSRS--PRSSSSRSSSPYSKSPV 153
Query: 619 YVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESE 660
R S+ +++ + EE + +EE + +E SE
Sbjct: 154 SKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSE 195
Score = 35.4 bits (80), Expect = 0.21
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 27/187 (14%)
Query: 167 QNHANHNHRIRTNPAIVKTENSWSNKAKSICQQQ-KPQRRPCSELLKYLTTNDDPPHTK- 224
+ H+ R R+ K + S +++S ++ + R P S ++ P++K
Sbjct: 97 RRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSS-----SSRSSSPYSKS 151
Query: 225 PTENRNSSRDKCTSKKKSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTL 284
P R S++K T K + Q +S PL +S +PK + FE+ E
Sbjct: 152 PVSKRRGSQEKQTKKAEGEPQEES------------PLKSKSQEEPKDT-FEHDPSE--- 195
Query: 285 SVELSGTAGLTPPTTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNS 344
S++ + T P + DN SP+ S + PPS+ S++ +S
Sbjct: 196 SIDEFNKSSATSGDIWPGLSAYDN----SPRSPHSPSPIATPPSQSSSCSDAPMLSTVHS 251
Query: 345 TKKGPEQ 351
K P Q
Sbjct: 252 AKNTPSQ 258
Score = 34.3 bits (77), Expect = 0.47
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 563 QRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRS 622
+R + RS+ + S SR + ++P +S Y +S H R + H S S
Sbjct: 697 RRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKS-YKDDSKHKREQDHSRSS----S 751
Query: 623 RSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRE 658
S SP S R EE + ++ + EE++ +E +E
Sbjct: 752 SSASPSSPSSR----EEKESKKEREEEFKTHHEMKE 783
>gi|116812577 LUC7-like 2 [Homo sapiens]
Length = 392
Score = 50.8 bits (120), Expect = 5e-06
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 559 SQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPL 618
S+ P+R RSR R RS SR R+RS+S R RS SS R R+H+ S
Sbjct: 265 SKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRS---RSSSRSRSRSHQRSRH 321
Query: 619 YVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKA---IEE 675
R RSR RR + + + R+ R+ R+ +R K ++R + A E+
Sbjct: 322 SSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPRDRDR-KDKKRSYESANGRSED 380
Query: 676 RR 677
RR
Sbjct: 381 RR 382
Score = 41.6 bits (96), Expect = 0.003
Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 555 KSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSR-------SPGSRSSSRSCYYYESSH 607
+S+ +R +R RS+SR RHR SRS SRSRSR S RS RS
Sbjct: 282 RSMSRERKRRTRSKSRE-KRHRHRSRSS-SRSRSRSHQRSRHSSRDRSRERSKRRSSKER 339
Query: 608 YRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRES 659
+R + + SR RSP R R D Y+ R E RR E+RE+
Sbjct: 340 FRDQDLASCDRDRSSRDRSPRD-RDRKDKKRSYESAN-GRSEDRRSSEEREA 389
Score = 38.5 bits (88), Expect = 0.025
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 609 RHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQ 668
R R+H +P RSRSR R R S E + R K E R + R S R++ R Q
Sbjct: 260 RSRSHSKNPK--RSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQ 317
Query: 669 RQK 671
R +
Sbjct: 318 RSR 320
Score = 34.3 bits (77), Expect = 0.47
Identities = 36/123 (29%), Positives = 48/123 (39%), Gaps = 35/123 (28%)
Query: 560 QRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLY 619
+R +R R R RS S++P RSRSR HR HR
Sbjct: 246 RREEREREEREKLRRSRSHSKNP-KRSRSRE-------------------HRRHR----- 280
Query: 620 VRSRSRS---PYSRRPRYDSYEEYQHERLK---REEYRREYEKRESERAKQRERQRQKAI 673
SRS RR R S E+ R + R R R S R + RER ++++
Sbjct: 281 ----SRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRERSKRRSS 336
Query: 674 EER 676
+ER
Sbjct: 337 KER 339
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 50.4 bits (119), Expect = 6e-06
Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 536 VSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRS-----RSFSRHRSCSRSPYSRSRSRS 590
V P P + S +Q+P + + RH S +R SRS SRS
Sbjct: 383 VIPPTPPVQQPFQASFQAQNEPLTQKPHQQEMEVEQPCIQEVKRHMSDNRKSRSRSASRS 442
Query: 591 PGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEY 650
P R SRS S R HR RSRSRS RR H R +
Sbjct: 443 P-KRRRSRS-----GSRSRRSRHR------RSRSRSRDRRR----------HSPRSRSQE 480
Query: 651 RREYEKRESERAKQRERQR-QKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVN 709
RR+ EK R K + + + A ++VG++ TT+ ++ E FG IE +
Sbjct: 481 RRDREKERERRQKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINM- 539
Query: 710 LRDDGDSYGFITYRYTCDAFAALE 733
+ G +Y + +R DA+ AL+
Sbjct: 540 IPPRGCAYIVMVHRQ--DAYRALQ 561
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 50.4 bits (119), Expect = 6e-06
Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 536 VSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRS-----RSFSRHRSCSRSPYSRSRSRS 590
V P P + S +Q+P + + RH S +R SRS SRS
Sbjct: 368 VIPPTPPVQQPFQASFQAQNEPLTQKPHQQEMEVEQPCIQEVKRHMSDNRKSRSRSASRS 427
Query: 591 PGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEY 650
P R SRS S R HR RSRSRS RR H R +
Sbjct: 428 P-KRRRSRS-----GSRSRRSRHR------RSRSRSRDRRR----------HSPRSRSQE 465
Query: 651 RREYEKRESERAKQRERQR-QKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVN 709
RR+ EK R K + + + A ++VG++ TT+ ++ E FG IE +
Sbjct: 466 RRDREKERERRQKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINM- 524
Query: 710 LRDDGDSYGFITYRYTCDAFAALE 733
+ G +Y + +R DA+ AL+
Sbjct: 525 IPPRGCAYIVMVHRQ--DAYRALQ 546
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 50.4 bits (119), Expect = 6e-06
Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 536 VSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRS-----RSFSRHRSCSRSPYSRSRSRS 590
V P P + S +Q+P + + RH S +R SRS SRS
Sbjct: 383 VIPPTPPVQQPFQASFQAQNEPLTQKPHQQEMEVEQPCIQEVKRHMSDNRKSRSRSASRS 442
Query: 591 PGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEY 650
P R SRS S R HR RSRSRS RR H R +
Sbjct: 443 P-KRRRSRS-----GSRSRRSRHR------RSRSRSRDRRR----------HSPRSRSQE 480
Query: 651 RREYEKRESERAKQRERQR-QKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVN 709
RR+ EK R K + + + A ++VG++ TT+ ++ E FG IE +
Sbjct: 481 RRDREKERERRQKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINM- 539
Query: 710 LRDDGDSYGFITYRYTCDAFAALE 733
+ G +Y + +R DA+ AL+
Sbjct: 540 IPPRGCAYIVMVHRQ--DAYRALQ 561
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 50.1 bits (118), Expect = 8e-06
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 548 RDSVSPPKSLFSQR-PQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESS 606
R S SP +SL +R P+R RSRS H S S + R R + R E
Sbjct: 258 RRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSS---FDRELEREKERQRLEREAKEREKE 314
Query: 607 HYRHRT--------HRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEK-R 657
R R+ S RSRSRS + R D E + E + R+Y+K R
Sbjct: 315 RRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKER 374
Query: 658 ESERAKQRERQRQKAIEER 676
+ER K+RER R+++ E+R
Sbjct: 375 GNEREKERERSRERSKEQR 393
Score = 45.4 bits (106), Expect = 2e-04
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 563 QRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRS 622
+R + + SR RS R SRSRSR+ G RS SRS + +H+ RS
Sbjct: 416 KRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRS----KEKSSKHKNESKEKSNKRS 471
Query: 623 RSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQR 669
RS S + R DS E+ + KRE + + R+ R+K+R +R
Sbjct: 472 RSGS----QGRTDSVEKSK----KREHSPSKEKSRKRSRSKERSHKR 510
Score = 38.1 bits (87), Expect = 0.032
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 560 QRPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLY 619
+R R R R RS SR R R R R + R Y+ R
Sbjct: 327 RRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKE----- 381
Query: 620 VRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEER 676
R RSR + EE +H+ K + R+ +KR+S++ K+ R R + + R
Sbjct: 382 -RERSRERSKEQRSRGEVEEKKHKEDKDDRRHRD-DKRDSKKEKKHSRSRSRERKHR 436
Score = 37.0 bits (84), Expect = 0.072
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 555 KSLFSQRPQRMRSRSRSF---SRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHR 611
+S +R R RSRSR+ SR RS +S ++ S+ ++ S S + +
Sbjct: 427 RSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSK 486
Query: 612 THRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRER 667
+SP +SR RS R + + + + K + R + ++ES+ + + +
Sbjct: 487 KREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIEQESQEKQHKNK 542
Score = 35.4 bits (80), Expect = 0.21
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 585 RSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHER 644
R RSRSP S R S HR S + R R E + +R
Sbjct: 257 RRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELER-------------EKERQR 303
Query: 645 LKREEYRREYEKRES-------ERAKQRERQRQKAIEERR 677
L+RE RE E+R S ER + R R+R ++ R
Sbjct: 304 LEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSR 343
Score = 34.7 bits (78), Expect = 0.36
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 566 RSRSRS---FSRHRSCSRSPYS-RSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVR 621
RSRSRS S+H++ S+ + RSRS S G S E S + ++ + S R
Sbjct: 447 RSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKER 506
Query: 622 SRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRE 658
S R + + D ++ + + +++E ++++ ++
Sbjct: 507 SHKRDHSDSKDQSDKHDRRRSQSIEQESQEKQHKNKD 543
Score = 31.6 bits (70), Expect = 3.0
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 604 ESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAK 663
E + R SP S RSP R R E + RE R + +R AK
Sbjct: 250 EIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAK 309
Query: 664 QRERQRQKA 672
+RE++R+++
Sbjct: 310 EREKERRRS 318
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 50.1 bits (118), Expect = 8e-06
Identities = 50/122 (40%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 568 RSRSFSRHRSCSRSPYSRSRSRSPG---SRSSSRSCYYYESSHYRHRTHRNSPLYVRSR- 623
RSRS+ R SRSP R RSRS G SRS SRS Y S Y + SP Y RSR
Sbjct: 117 RSRSYGRR---SRSPRRRHRSRSRGPSCSRSRSRS--RYRGSRYSRSPYSRSP-YSRSRY 170
Query: 624 SRSPYS----RRPRYD----SYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEE 675
SRSPYS R RY S Y + R R R + K S R K+
Sbjct: 171 SRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSS-TSSRSASTSKSSSA 229
Query: 676 RR 677
RR
Sbjct: 230 RR 231
Score = 45.8 bits (107), Expect = 2e-04
Identities = 50/148 (33%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 548 RDSVSPPKSLFSQRPQRMRSRSRSFSRHRSC-------SRSPYSRSR-SRSPGSRSSSRS 599
R S SP + S+ SRSRS SR+R SRSPYSRSR SRSP SRS R
Sbjct: 123 RRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRE 182
Query: 600 CYY----YESSHYRH---------RTHRNSPLYVRSR----SRSPYSRRPRYDSYEEYQH 642
Y Y SS Y + R+H S SR S+S +RR + S
Sbjct: 183 SRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSR-SR 241
Query: 643 ERLKREEYRREYEKRESERAKQRERQRQ 670
R + R + ++K R R ++
Sbjct: 242 SRSRSSSMTRSPPRVSKRKSKSRSRSKR 269
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/120 (35%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 563 QRMRSRSRSFSRHRSCSRSPYSRSR-SRSPGSRSS-SRSCYY---YESSHYRHR----TH 613
+R RSRSR S RS SRS Y SR SRSP SRS SRS Y Y S YR +H
Sbjct: 130 RRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSH 189
Query: 614 RNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAI 673
+S Y SR +S R S + + S ++ R R R ++
Sbjct: 190 YSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRSRSRSSSM 249
Score = 33.9 bits (76), Expect = 0.61
Identities = 31/97 (31%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 576 RSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYD 635
R RS R RS G RS Y S R HR SRSR P R R
Sbjct: 95 RDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHR-------SRSRGPSCSRSR-- 145
Query: 636 SYEEYQHERLKREEY------RREYEKRESERAKQRE 666
S Y+ R R Y R Y + R++ RE
Sbjct: 146 SRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRE 182
Score = 33.9 bits (76), Expect = 0.61
Identities = 47/132 (35%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 532 SLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSPY--SRSRSR 589
S ++ SP S S R S SP S R R S S + + S Y SRS S+
Sbjct: 153 SRYSRSPYSRSPYSRSRYSRSP-YSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSK 211
Query: 590 SPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRR--PRYDSYEEYQHERLKR 647
S GS +SSRS +SS R R+ +S RSRSRS R PR + R KR
Sbjct: 212 S-GSSTSSRSASTSKSSSAR-RSKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKSRSRSKR 269
Query: 648 EEYRREYEKRES 659
E E + S
Sbjct: 270 PPKSPEEEGQMS 281
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 49.7 bits (117), Expect = 1e-05
Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 563 QRMRSRSRSFSRHRSCSRSPYSR-SRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVR 621
+R RS SRS S RS SRS +SR SRSRS S+SS S R R+ S R
Sbjct: 180 RRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSR 239
Query: 622 SRSRSPYSRRPRYDSYEEYQH----ERLKREEYRRE--------------YEKRESERAK 663
SRS+ SR P + H R K ++ E R ++K
Sbjct: 240 SRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSK 299
Query: 664 QRERQRQKAIEERR 677
R R +++ +EE +
Sbjct: 300 SRSRSQERRVEEEK 313
Score = 49.3 bits (116), Expect = 1e-05
Identities = 48/168 (28%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Query: 510 LFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQRPQRMRSRS 569
L +D + SY + S S S S S S R S S+ R SRS
Sbjct: 172 LVEDKPGSRRRRSYSRSRSHSRSR---SRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRS 228
Query: 570 RSFSRHRSCSRSPYSRSRSRSPG-----SRSSSRSCYYYESSHYRHRTHRNSPLYVRSRS 624
RS SR RS SRS + +SRSP SRS S +S +N+ + +S
Sbjct: 229 RSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKS 288
Query: 625 RSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKA 672
RSP + + S Q R++ E+ R E++ ++ R R ++
Sbjct: 289 RSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRS 336
Score = 47.4 bits (111), Expect = 5e-05
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 566 RSRSRSFSRHRSCSRSPYSRSRSRS-PGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRS 624
+SRSRS S S+S +S+SRSRS GSRS S+S +S + SP +SRS
Sbjct: 203 KSRSRSGS-----SKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRS 257
Query: 625 RSPYSRRPRYDSYEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEERRV 678
RS + + R S ++ + E+++ + + + R R K + + R ++ +ERRV
Sbjct: 258 RSHSAGKSRSKSKDQAE-EKIQNNDNVGKPKSRSPSRHKSKSKSRSRS-QERRV 309
Score = 45.8 bits (107), Expect = 2e-04
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 550 SVSPPKSLFSQRPQRMRSRSRSFSRHRSCSRSP------------YSRSRSRSPG---SR 594
S S K S+ P + +SRSRS S +S S+S + +SRSP S+
Sbjct: 238 SRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK 297
Query: 595 SSSRSCYY-------YESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKR 647
S SRS S R R+ S RSRSRS R R S + + +R R
Sbjct: 298 SKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGR 357
Query: 648 EEYRREYEKRESERAK-QRERQRQKAIEERRVIYVGKIRPDTTRTELR 694
+ R E R R+K +R R+R + + K + DT R++ R
Sbjct: 358 KRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSR 405
Score = 45.4 bits (106), Expect = 2e-04
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 549 DSVSPPKSLF-SQRPQRMRSRSRS------------FSRHRSCSRS-PYSRSRSRSPG-S 593
D+V PKS S+ + +SRSRS SR RS +S SRSRSRS G S
Sbjct: 281 DNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGS 340
Query: 594 RSSSRSCYYYESSHY-RHRTHRNSPLYVRSRSRSPYSRRPRYDSYEEYQHERLKREEYRR 652
RS SRS + R R+ S RSRS+S SR+ + + K++E
Sbjct: 341 RSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTD 400
Query: 653 EYEKRESERAKQRERQRQKAIEERR 677
+ R R+ +ER+ K+ +R
Sbjct: 401 RSQSRSPSRSVSKEREHAKSESSQR 425
Score = 36.6 bits (83), Expect = 0.094
Identities = 56/256 (21%), Positives = 84/256 (32%), Gaps = 29/256 (11%)
Query: 441 SKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDEADKTGELRDSDFSNEQFSKLPMF 500
S+ S K + ++ H S++ D+A++ +++++D + S+ P
Sbjct: 236 SQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE--KIQNNDNVGKPKSRSPSR 293
Query: 501 INSGLAMDGLFDDSEDESDKLSYPWDGTQSYSLFNVSPSCSSFNSPCRDSVSPPKSLFSQ 560
S + E +K G S S S R +
Sbjct: 294 HKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDK 353
Query: 561 RPQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGS--------------RSSSRSCYYYESS 606
R R RSR S SR RS S+S SR R S RS SRS S
Sbjct: 354 RKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSK 413
Query: 607 HYRHRTHRNSPLY-------------VRSRSRSPYSRRPRYDSYEEYQHERLKREEYRRE 653
H +S RSRSRS +P S + + + R +
Sbjct: 414 EREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSK 473
Query: 654 YEKRESERAKQRERQR 669
R + R+ R R R
Sbjct: 474 SRSRSASRSPSRSRSR 489
Score = 35.8 bits (81), Expect = 0.16
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 579 SRSPYSRSRSRSPGSRSSSRSCYYYESS--HYRHRTHRNSPLYVRSRSRSPYSRRPRYDS 636
S S R+ + G+ + R E R R++ S + RSRSRS +SR+ R S
Sbjct: 149 SYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRS 208
Query: 637 YEEYQHERLKREEYRREYEKRESERAKQRERQRQKAIEER 676
R R R R++ + R R K + R
Sbjct: 209 GSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSR 248
Score = 35.0 bits (79), Expect = 0.27
Identities = 24/38 (63%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 562 PQRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRS 599
P RSRS+S S+ RS S+S SRS SRSP SRS SRS
Sbjct: 455 PSESRSRSKSASKTRSRSKS-RSRSASRSP-SRSRSRS 490
Score = 34.3 bits (77), Expect = 0.47
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 554 PKSLFSQRPQRMRSRSRSFSRHRSCSRSPYSRSRSRS 590
P S+ ++RSRS SR RS SRSP SRSRSRS
Sbjct: 455 PSESRSRSKSASKTRSRSKSRSRSASRSP-SRSRSRS 490
Score = 30.0 bits (66), Expect = 8.8
Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 9/198 (4%)
Query: 181 AIVKTENSWSNKAKSICQQQKP---QRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCT 237
A+ K + + N K + KP +RR S + + H++ + +R+ S
Sbjct: 156 ALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSH 215
Query: 238 SKKKSHTQSQSQHLQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPP 297
SK +S ++S S+ ++K + S + S + SP + K+ R+ S S +
Sbjct: 216 SKSRSRSRSGSRS-RSKSRSRSQSRS-RSKKEKSRSPSKEKSRSRSHSAGKSRSKS---- 269
Query: 298 TTPPHKANQDNPFRASPKLKSSCKTVVPPPSKKPRYSESSGTQGNNSTKKGPEQSELYAQ 357
+ Q+N PK +S + S+ + S +G Q + Q
Sbjct: 270 KDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQ 329
Query: 358 LSKSSVLTGGHEERKTKR 375
S GG R R
Sbjct: 330 SRSRSRSKGGSRSRSRSR 347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,300,612
Number of Sequences: 37866
Number of extensions: 1751661
Number of successful extensions: 13294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 374
Number of HSP's that attempted gapping in prelim test: 8252
Number of HSP's gapped (non-prelim): 2979
length of query: 798
length of database: 18,247,518
effective HSP length: 110
effective length of query: 688
effective length of database: 14,082,258
effective search space: 9688593504
effective search space used: 9688593504
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.