Search of human proteins with 13904870

Search of human proteins with 13904870

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13904870 ribosomal protein S5 [Homo sapiens]
         (204 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13904870 ribosomal protein S5 [Homo sapiens]                       405   e-113
gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens]         37   0.015
gi|108860697 zinc finger protein 592 [Homo sapiens]                    30   1.9  
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo...    27   9.2  
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo...    27   9.2  

>gi|13904870 ribosomal protein S5 [Homo sapiens]
          Length = 204

 Score =  405 bits (1042), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
           MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1   MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 61  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
           FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
           PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 181 AKGSSNSYAIKKKDELERVAKSNR 204
           AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204


>gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens]
          Length = 242

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 17/177 (9%)

Query: 42  KEKYAKYLPHSA---GRYAAKRFRKAQCPIVERLTNSMMMHGRN---NGKKLMTVRIVKH 95
           +EKY + L  +       A K     + P++ + TN MM+ G         + T+  VK 
Sbjct: 61  EEKYVRELKKTQLIKAAPAGKTSSVFEDPVISKFTNMMMIGGNKVLARSLMIQTLEAVKR 120

Query: 96  A-FEIIHLLTGE-------NPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRV 147
             FE  H  + E       NP  +   A+ N  P      I + G   +  V +   RR 
Sbjct: 121 KQFEKYHAASAEEQATIERNPYTIFHQALKNCEPMIGLVPILKGGRFYQVPVPLPDRRRR 180

Query: 148 NQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
             A+  + T  R+   +    + E L+ +L+ A         IK+K +L ++A++NR
Sbjct: 181 FLAMKWMITECRDKKHQRT-LMPEKLSHKLLEAFHNQGP--VIKRKHDLHKMAEANR 234


>gi|108860697 zinc finger protein 592 [Homo sapiens]
          Length = 1267

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 36   QDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNN 83
            Q+++  +E Y  ++  S GR   KR+   QC       NS+  H RNN
Sbjct: 989  QEWVPDRESYVSHMKKSHGR-TLKRYPCRQCEQSFHTPNSLRKHIRNN 1035


>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
           sapiens]
          Length = 1236

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 69  VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVN 114
           + +L++ M  H R   + L T  I K  FE++  L  E   +VLVN
Sbjct: 928 IGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEYHRVLVN 973


>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
            sapiens]
          Length = 1297

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 69   VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVN 114
            + +L++ M  H R   + L T  I K  FE++  L  E   +VLVN
Sbjct: 989  IGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEYHRVLVN 1034


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,942,234
Number of Sequences: 37866
Number of extensions: 254959
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.