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Search of human proteins with 13899257
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13899257 transmembrane and ubiquitin-like domain containing
1 isoform 1 [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13899257 transmembrane and ubiquitin-like domain containing 1... 505 e-143
gi|209862889 transmembrane and ubiquitin-like domain containing ... 505 e-143
gi|115527090 transmembrane and ubiquitin-like domain containing ... 172 2e-43
gi|115527092 transmembrane and ubiquitin-like domain containing ... 172 2e-43
gi|115527088 transmembrane and ubiquitin-like domain containing ... 172 2e-43
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 44 2e-04
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 42 6e-04
gi|24308527 stereocilin [Homo sapiens] 40 0.002
gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens] 39 0.003
gi|157785645 SPEG complex locus [Homo sapiens] 38 0.007
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 37 0.021
gi|55956914 myosin binding protein H [Homo sapiens] 37 0.021
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 37 0.021
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 37 0.021
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 36 0.035
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 36 0.035
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 36 0.035
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 35 0.078
gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens] 35 0.078
gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B... 34 0.10
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 34 0.10
gi|224028248 non-POU domain containing, octamer-binding isoform ... 34 0.10
gi|224028246 non-POU domain containing, octamer-binding isoform ... 34 0.10
gi|224028244 non-POU domain containing, octamer-binding isoform ... 34 0.10
gi|34932414 non-POU domain containing, octamer-binding isoform 1... 34 0.10
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.10
gi|238859557 regulatory factor X1 [Homo sapiens] 34 0.13
gi|126362953 leukocyte immunoglobulin-like receptor, subfamily B... 34 0.13
gi|126362951 leukocyte immunoglobulin-like receptor, subfamily B... 34 0.13
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 34 0.13
>gi|13899257 transmembrane and ubiquitin-like domain containing 1
isoform 1 [Homo sapiens]
Length = 246
Score = 505 bits (1300), Expect = e-143
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATD 60
MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATD
Sbjct: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATD 60
Query: 61 SMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAW 120
SMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAW
Sbjct: 61 SMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAW 120
Query: 121 PHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNP 180
PHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNP
Sbjct: 121 PHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNP 180
Query: 181 PCPPGSEPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLA 240
PCPPGSEPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLA
Sbjct: 181 PCPPGSEPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLA 240
Query: 241 FAMYRP 246
FAMYRP
Sbjct: 241 FAMYRP 246
>gi|209862889 transmembrane and ubiquitin-like domain containing 1
isoform 2 [Homo sapiens]
Length = 246
Score = 505 bits (1300), Expect = e-143
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATD 60
MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATD
Sbjct: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATD 60
Query: 61 SMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAW 120
SMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAW
Sbjct: 61 SMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAW 120
Query: 121 PHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNP 180
PHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNP
Sbjct: 121 PHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNP 180
Query: 181 PCPPGSEPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLA 240
PCPPGSEPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLA
Sbjct: 181 PCPPGSEPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLA 240
Query: 241 FAMYRP 246
FAMYRP
Sbjct: 241 FAMYRP 246
>gi|115527090 transmembrane and ubiquitin-like domain containing 2
isoform b [Homo sapiens]
Length = 321
Score = 172 bits (437), Expect = 2e-43
Identities = 111/298 (37%), Positives = 152/298 (51%), Gaps = 58/298 (19%)
Query: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGG----------------------D 38
+TLIEGVG+EV V+ V+ +L L LAW+ST+ A+ G D
Sbjct: 26 VTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLHLGHVD 85
Query: 39 PLPQPSGTPTPSQ---PSAAMAATDSMRGEAPGAET----------PSLRH--------- 76
L G P P++ PS GE G T PSL H
Sbjct: 86 HLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPK 145
Query: 77 ----RGQAAQPEP--STGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAWPHDTIGSLKR 130
G ++ P S T PP+P + +RLKFLND+E++A A P DT+G+LK
Sbjct: 146 RQAGAGSSSPEAPLRSEDSTCLPPSPGL----ITVRLKFLNDTEELAVARPEDTVGALKS 201
Query: 131 TQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCH----VSTRVGPPNPPCPPGS 186
FPG+E Q++LIYQG+LL D +TL SL++ NCV+HCH S GP P +
Sbjct: 202 KYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 261
Query: 187 EPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLAFAMY 244
EP G+ +GSL++P+ ++LL ++WY +I YR FF AT+ L G T+ S L F MY
Sbjct: 262 EPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMY 319
>gi|115527092 transmembrane and ubiquitin-like domain containing 2
isoform a [Homo sapiens]
Length = 301
Score = 172 bits (437), Expect = 2e-43
Identities = 111/298 (37%), Positives = 152/298 (51%), Gaps = 58/298 (19%)
Query: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGG----------------------D 38
+TLIEGVG+EV V+ V+ +L L LAW+ST+ A+ G D
Sbjct: 6 VTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLHLGHVD 65
Query: 39 PLPQPSGTPTPSQ---PSAAMAATDSMRGEAPGAET----------PSLRH--------- 76
L G P P++ PS GE G T PSL H
Sbjct: 66 HLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPK 125
Query: 77 ----RGQAAQPEP--STGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAWPHDTIGSLKR 130
G ++ P S T PP+P + +RLKFLND+E++A A P DT+G+LK
Sbjct: 126 RQAGAGSSSPEAPLRSEDSTCLPPSPGL----ITVRLKFLNDTEELAVARPEDTVGALKS 181
Query: 131 TQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCH----VSTRVGPPNPPCPPGS 186
FPG+E Q++LIYQG+LL D +TL SL++ NCV+HCH S GP P +
Sbjct: 182 KYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
Query: 187 EPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLAFAMY 244
EP G+ +GSL++P+ ++LL ++WY +I YR FF AT+ L G T+ S L F MY
Sbjct: 242 EPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMY 299
>gi|115527088 transmembrane and ubiquitin-like domain containing 2
isoform a [Homo sapiens]
Length = 301
Score = 172 bits (437), Expect = 2e-43
Identities = 111/298 (37%), Positives = 152/298 (51%), Gaps = 58/298 (19%)
Query: 1 MTLIEGVGDEVTVLFSVLACLLVLALAWVSTHTAEGG----------------------D 38
+TLIEGVG+EV V+ V+ +L L LAW+ST+ A+ G D
Sbjct: 6 VTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLHLGHVD 65
Query: 39 PLPQPSGTPTPSQ---PSAAMAATDSMRGEAPGAET----------PSLRH--------- 76
L G P P++ PS GE G T PSL H
Sbjct: 66 HLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPK 125
Query: 77 ----RGQAAQPEP--STGFTATPPAPDSPQEPLVLRLKFLNDSEQVARAWPHDTIGSLKR 130
G ++ P S T PP+P + +RLKFLND+E++A A P DT+G+LK
Sbjct: 126 RQAGAGSSSPEAPLRSEDSTCLPPSPGL----ITVRLKFLNDTEELAVARPEDTVGALKS 181
Query: 131 TQFPGREQQVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCH----VSTRVGPPNPPCPPGS 186
FPG+E Q++LIYQG+LL D +TL SL++ NCV+HCH S GP P +
Sbjct: 182 KYFPGQESQMKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSAT 241
Query: 187 EPGPSGLEIGSLLLPLLLLLLLLLWYCQIQYRPFFPLTATLGLAGFTLLLSLLAFAMY 244
EP G+ +GSL++P+ ++LL ++WY +I YR FF AT+ L G T+ S L F MY
Sbjct: 242 EPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMY 299
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 43.5 bits (101), Expect = 2e-04
Identities = 59/213 (27%), Positives = 81/213 (38%), Gaps = 40/213 (18%)
Query: 11 VTVLFSVLACLLVLALAWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATDSMRGEAPGAE 70
VT+L S +L ALA S P+ P S P+A + ++ AP A
Sbjct: 1853 VTILASASIPILASALASTSA-----------PTPAPAASSPAAPVITAPTIPASAPTAS 1901
Query: 71 TPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLVLRLKFLNDSEQV---ARAWPHDTIGS 127
P A P P T +A PAP +P + K + + Q + P +I
Sbjct: 1902 VPLAPASASAPAPAP-TPVSAPNPAPPAPAQTQAQTHKPVQNPLQTTSQSSKQPPPSI-R 1959
Query: 128 LKRTQFPGREQQV---RLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNPPCPP 184
L Q P V + I Q G T L + P VL+ +S ++GP +PP PP
Sbjct: 1960 LPSAQTPNGTDYVASGKSIQTPQSHGTLTAELWDNKVAPPAVLN-DISKKLGPISPPQPP 2018
Query: 185 ------------GSEPG--------PSGLEIGS 197
GS P SGLEIG+
Sbjct: 2019 SVSAWNKPLTSFGSAPSSEGAKNGQESGLEIGT 2051
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 41.6 bits (96), Expect = 6e-04
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 36 GGDPLPQPS-GTPTPSQPSAAMAATDSMRGEA----PGAETPSLRHRGQAAQPEPSTGFT 90
GGD P P G P+ QPS + + GEA PG P L + + PEPST +
Sbjct: 1016 GGDRAPGPELGLPSTGQPSEQVCLRPGVSGEAQGSGPGEVLPPLLQL-EGSSPEPSTCPS 1074
Query: 91 ATPPAPDSPQEPLVLR 106
P P PQ P +R
Sbjct: 1075 GLVPEPPEPQGPAKVR 1090
>gi|24308527 stereocilin [Homo sapiens]
Length = 1775
Score = 40.0 bits (92), Expect = 0.002
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 135 GREQQVR--LIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNPPCPPGSEPGPSG 192
G+EQ R L++Q +LG + L +P GPP P PP + GPS
Sbjct: 121 GQEQTPRDFLVHQAGVLGGLVEVLLGALVPG------------GPPTPTRPPCTRDGPSD 168
Query: 193 LEIGSLLLPLLLLLLL-LLWYCQIQYRPFFPLTATLGLAG 231
+ + LP LLLLL W +Q +P T GL G
Sbjct: 169 CVLAADWLPSLLLLLEGTRWQALVQVQPSVDPTNATGLDG 208
>gi|40548372 tetratricopeptide repeat domain 15 [Homo sapiens]
Length = 735
Score = 39.3 bits (90), Expect = 0.003
Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 37 GDPLPQPSGTPTPS------------QPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPE 84
GDP P+P+GTP+PS PS+ A E PG+E A+P
Sbjct: 98 GDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPV 157
Query: 85 P-STGFT-ATPPAPDSPQEP-LVLRLKFLNDSEQVARAWP 121
P T F+ PPA EP +V F SE AR P
Sbjct: 158 PVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPP 197
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 38.1 bits (87), Expect = 0.007
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 43 PSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRG-QAAQPE----PSTGFTATPPAP 96
PS PTP PS A++ S++ P +TP RHRG QAA+P PST T + P P
Sbjct: 2821 PSSPPTP--PSQALS---SLKAVGPPPQTPPRRHRGLQAARPAEPTLPSTHVTPSEPKP 2874
Score = 28.1 bits (61), Expect = 7.3
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 36 GGDPLPQPSGTPTPSQ---PSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTG 88
G PL TP S+ P+AA + S E PG E R RG A + EP G
Sbjct: 531 GEPPLFSRPSTPKTSRAVSPAAAQPPSPSS-AEKPGDEPGRPRSRGPAGRTEPGEG 585
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 36.6 bits (83), Expect = 0.021
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 10 EVTVLFSVLACLLVLALAWVSTHTAEGGDPLP-----------QPSGTPTPSQPSAAMAA 58
E+ LA L L LAW+ P P + +G P PS+P A A
Sbjct: 6 ELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPA 65
Query: 59 TDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLV 104
E PG E L G+ A P G AP +E V
Sbjct: 66 ASPAGPEEPG-EPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAV 110
>gi|55956914 myosin binding protein H [Homo sapiens]
Length = 477
Score = 36.6 bits (83), Expect = 0.021
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 32 HTAEGGDPLPQPSGTPTPSQPSAA----MAATDSMRGEAPGAETPSLRHRGQAAQPEPST 87
+T+EG P+ + + + P+A +A ++S R E + P + QA P+ T
Sbjct: 5 NTSEGPACSPEETASESAKVPTAEPPGEVAVSESTREE----QVP----KPQAPAPQAPT 56
Query: 88 GFTATPPAP---DSPQEPLVLRLKFLNDSEQVARAWPHDTIGSL 128
TAT PAP D P PL+L L ++ S P + +G L
Sbjct: 57 ASTATKPAPPSEDVPSAPLLLTLDDVSSSSVTVSWEPPERLGRL 100
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 36.6 bits (83), Expect = 0.021
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 10 EVTVLFSVLACLLVLALAWVSTHTAEGGDPLP-----------QPSGTPTPSQPSAAMAA 58
E+ LA L L LAW+ P P + +G P PS+P A A
Sbjct: 6 ELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPA 65
Query: 59 TDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLV 104
E PG E L G+ A P G AP +E V
Sbjct: 66 ASPAGPEEPG-EPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAV 110
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 36.6 bits (83), Expect = 0.021
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 10 EVTVLFSVLACLLVLALAWVSTHTAEGGDPLP-----------QPSGTPTPSQPSAAMAA 58
E+ LA L L LAW+ P P + +G P PS+P A A
Sbjct: 6 ELLAALPALATALALLLAWLLVRRGAAASPEPARAPPEPAPPAEATGAPAPSRPCAPEPA 65
Query: 59 TDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPDSPQEPLV 104
E PG E L G+ A P G AP +E V
Sbjct: 66 ASPAGPEEPG-EPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAV 110
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 35.8 bits (81), Expect = 0.035
Identities = 47/174 (27%), Positives = 65/174 (37%), Gaps = 34/174 (19%)
Query: 39 PLPQPSGTPTP-SQPSAAMAATDSMRGEAPG-AETPSLRHRGQAAQPEPSTGFTATPPAP 96
P P P+ PTP ++P A + PG A P+L G + S F A+P P
Sbjct: 532 PAPPPASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEP 591
Query: 97 DSPQE--------------PLVLRLKFLNDSEQVARAWPHDTIGSLK-RTQFP---GREQ 138
P + P V +++ D R P +G K + P R+Q
Sbjct: 592 QLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQ 651
Query: 139 QVRLIYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNPPCPP--GSEPGP 190
Q +L+ Q Q GS PP V PP+PP P G+ P P
Sbjct: 652 QEQLLKQQQQHQWQQHQQGS--APPTPV----------PPSPPQPVTLGAVPAP 693
Score = 29.6 bits (65), Expect = 2.5
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 25 ALAWVSTH----TAEGGDP-----LPQPSGTPTPSQPSA-AMAATDSMRGEAPGAETPSL 74
ALA +S+ TA GG P LPQ P+P P+ +S P E P
Sbjct: 1479 ALAQLSSRQGSVTAPGGHPRHKPGLPQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGP 1538
Query: 75 RHRGQAAQPEPSTGFTATPP--APDSPQEPLVLR 106
RG P S G + PP P++P +L+
Sbjct: 1539 MVRGVGGTPRDSAGVSPFPPKRRERPPRKPELLQ 1572
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 35.8 bits (81), Expect = 0.035
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 36 GGDPLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQ----------PEP 85
G P P P G P P P A S R P A ++R A Q P P
Sbjct: 1032 GALPFPSP-GPPQPPHPPLAYGPAPSTRPMGPQAAPLTIRGPSSAGQSTPSPHLVPSPAP 1090
Query: 86 STGFTATPPAPDSPQEPLVLR 106
S G PP P + + P LR
Sbjct: 1091 SPGPGPVPPRPPAAEPPPCLR 1111
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 35.8 bits (81), Expect = 0.035
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 39 PLPQPSGTPTPSQ--------------PSAAMAATDSMRGEAPGAETPSLRHRGQAAQPE 84
PLPQP P Q P AA T S R +P + P L+ R + +PE
Sbjct: 62 PLPQPQSRPRQEQSPPPARQDLQGPPLPEAAPGIT-SFRS-SPWQQPPPLQQRRRGREPE 119
Query: 85 PSTGFTATPPAPDSPQE 101
+TG P A P+E
Sbjct: 120 GATGLPGAPAAEGEPEE 136
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 34.7 bits (78), Expect = 0.078
Identities = 40/157 (25%), Positives = 53/157 (33%), Gaps = 30/157 (19%)
Query: 39 PLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTG---FTATPPA 95
P P+ P P P+ + + E +P L G P P+T F A PPA
Sbjct: 46 PAAPPAARPGPRPPAGELGSIGDH--ERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPA 103
Query: 96 PDSPQEPLVLRLKFLNDSEQVARAWPHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQT 155
P + HD + L + G+ + Y LG
Sbjct: 104 PAPAP---------------ASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAA 148
Query: 156 LGSLHLPPNCVLHCHVSTRVGPPNPPCPPG---SEPG 189
G+LH P C H PP PP PP +EPG
Sbjct: 149 KGALH--PGCFAPLHP-----PPPPPPPPAELKAEPG 178
>gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]
Length = 478
Score = 34.7 bits (78), Expect = 0.078
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 21/88 (23%)
Query: 34 AEGG--DPLPQPSGTPTPSQPSAAMAAT--------DSMRGEAP---------GAETPSL 74
A GG P P P+G P P+ P++A A DS R +A PSL
Sbjct: 5 AAGGAPGPAPGPAGPPPPAAPTSAARAPPQALRRRGDSRRRQAALFFLNNISLDGRPPSL 64
Query: 75 RHRGQAAQPEPSTGFTATPPAPDSPQEP 102
G+ P P+ PPAP P+ P
Sbjct: 65 GPGGEKPPPPPAE--AREPPAPPPPEPP 90
>gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 1 [Homo sapiens]
Length = 598
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 171 VSTRVGPPNPPCPP-GSEPGPS-----GLEIGSLLLPLLLLLLLLLWYCQIQYR 218
+ST GP + P P GS+P G+ IG L+ +LLLLLLLL + +++R
Sbjct: 433 ISTPAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVVLLLLLLLLLFLILRHR 486
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 34.3 bits (77), Expect = 0.10
Identities = 40/160 (25%), Positives = 59/160 (36%), Gaps = 21/160 (13%)
Query: 43 PSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEP---STGFTATP-PAPDS 98
PS TP S + AT + G TPS P +TGFTATP +P +
Sbjct: 4555 PSSTPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGT 4614
Query: 99 PQEPLVLRLKFLNDSEQVARAWPHDTIGSLKRTQFPGREQQVRL-------IYQGQLL-- 149
P V +++ + P + ++ + PG R+ + G +
Sbjct: 4615 ALTPPV----WISTTTTPTTTTPTTSGSTVTPSSIPGTTHTARVLTTTTTTVATGSMATP 4670
Query: 150 GDDTQTLGSLHLPPNCVLHCHVSTRVG-PPNPPCPPGSEP 188
TQT G+ PP+ T G NP PG+ P
Sbjct: 4671 SSSTQTSGT---PPSLTTTATTITATGSTTNPSSTPGTTP 4707
Score = 32.0 bits (71), Expect = 0.51
Identities = 38/153 (24%), Positives = 51/153 (33%), Gaps = 8/153 (5%)
Query: 43 PSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEP---STGFTATP-PAPDS 98
PS TP + S + AT + G TPS P +TGFTATP +P +
Sbjct: 2013 PSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGT 2072
Query: 99 PQEPLVLRLKFLNDSEQVARAWPHDTIGSLKRTQFPGREQQVRLIYQGQLLGDDTQTLGS 158
P V + + + P G+ TQT G+
Sbjct: 2073 ALTPPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGT 2132
Query: 159 LHLPPNCVLHCHVSTRVG-PPNPPCPPGSEPGP 190
PP+ T G NP PG+ P P
Sbjct: 2133 ---PPSLTTTATTITATGSTTNPSSTPGTTPIP 2162
>gi|224028248 non-POU domain containing, octamer-binding isoform 2
[Homo sapiens]
Length = 382
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 39 PLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPA 95
P P P+GTP P P+ M D G P P+ GQAA E TPPA
Sbjct: 314 PAPVPAGTPAPPGPATMM--PDGTLGLTP----PTTERFGQAATMEGIGAIGGTPPA 364
>gi|224028246 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 39 PLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPA 95
P P P+GTP P P+ M D G P P+ GQAA E TPPA
Sbjct: 403 PAPVPAGTPAPPGPATMM--PDGTLGLTP----PTTERFGQAATMEGIGAIGGTPPA 453
>gi|224028244 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 39 PLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPA 95
P P P+GTP P P+ M D G P P+ GQAA E TPPA
Sbjct: 403 PAPVPAGTPAPPGPATMM--PDGTLGLTP----PTTERFGQAATMEGIGAIGGTPPA 453
>gi|34932414 non-POU domain containing, octamer-binding isoform 1
[Homo sapiens]
Length = 471
Score = 34.3 bits (77), Expect = 0.10
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 39 PLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPA 95
P P P+GTP P P+ M D G P P+ GQAA E TPPA
Sbjct: 403 PAPVPAGTPAPPGPATMM--PDGTLGLTP----PTTERFGQAATMEGIGAIGGTPPA 453
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.10
Identities = 28/73 (38%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 41 PQPSGTPT--PSQPSAAMAAT--DSMRGEAPGAETPSLRHRGQAAQ--PEPSTGFTATPP 94
P P GTPT + PS+ T S G P A TPS H+G A P P G A P
Sbjct: 1341 PSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPS--HKGGPAMTPPSPKRG-PAIPS 1397
Query: 95 APDSPQEPLVLRL 107
P P V+ L
Sbjct: 1398 PKGDPTSPAVIPL 1410
Score = 32.7 bits (73), Expect = 0.30
Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 19/88 (21%)
Query: 35 EGGDPLPQPSGTPTP------------------SQPSAAMAATDSMRGEAPGAETPSLRH 76
+GG P P G PTP P+ A+ S +G P P
Sbjct: 1252 KGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKG-GPATSPPKGAP 1310
Query: 77 RGQAAQPEPSTGFTATPPAPDSPQEPLV 104
AA P G TPP +P P V
Sbjct: 1311 TPPAATPPSPKGSPGTPPPKGAPTPPAV 1338
Score = 32.3 bits (72), Expect = 0.39
Identities = 45/174 (25%), Positives = 52/174 (29%), Gaps = 25/174 (14%)
Query: 35 EGGDPLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPP 94
+GG P P PTP AAT P +P AA P G ATP
Sbjct: 951 KGGPATPSPKWAPTPP------AATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPS 1004
Query: 95 APDSPQEPLV---------LRLKFLNDSEQVARAWPHDTIGSLKRTQFP-GREQQVRLIY 144
+P P V F + A P GS T P G
Sbjct: 1005 PKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATL 1064
Query: 145 QGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNP-----PCPP-GSEPGPSG 192
G T +L PP S + GP P P PP + P P G
Sbjct: 1065 PSPKGGPATPSLKGAPTPPAAT---PPSPKGGPATPSPKGAPMPPAATPPSPKG 1115
Score = 32.3 bits (72), Expect = 0.39
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 35 EGGDPLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPP 94
+GG P G PTP AAT P +P AA P G ATPP
Sbjct: 1068 KGGPATPSLKGAPTPP------AATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPP 1121
Query: 95 APDSPQEP 102
+P P
Sbjct: 1122 HKGAPTTP 1129
Score = 32.0 bits (71), Expect = 0.51
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 40 LPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPE---------PSTGFT 90
+P P TP P A A S +P A TPS ++G + E PS
Sbjct: 1555 VPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPS-TYKGAPSPKELLIPPAVTSPSPKEA 1613
Query: 91 ATPPA--PDSPQE 101
TPPA P SP++
Sbjct: 1614 PTPPAVTPPSPEK 1626
Score = 31.2 bits (69), Expect = 0.86
Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 30 STHTAEGGDPLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGF 89
+T +G P P G PTP AAT P +P AA P G
Sbjct: 923 ATPAPKGIPASPSPKGAPTPP------AATPPSPKGGPATPSPKWAPTPPAATPPSPKGG 976
Query: 90 TATPPAPDSPQEP 102
ATP +P P
Sbjct: 977 PATPSPKGAPTPP 989
Score = 30.0 bits (66), Expect = 1.9
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 41 PQPSG---TPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPSTGFTATPPAPD 97
P P G TP+P AAT P P AA P G ATPP
Sbjct: 1226 PSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKG 1285
Query: 98 SPQEPLV 104
+P +V
Sbjct: 1286 APNPAVV 1292
Score = 28.1 bits (61), Expect = 7.3
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 27 AWVSTHTAEGGDPLPQPSGTPTPSQPSAAMAATDSMRGEAP--GAETPSL----RHRGQA 80
A V+ + +GG P G PTP P+A + G P GA TP +G
Sbjct: 1290 AVVTPPSPKGGPATSPPKGAPTP--PAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTP 1347
Query: 81 AQPEPSTGFTATPPAPDSPQEP 102
P + P P S + P
Sbjct: 1348 TLPATTPSSKGGPTTPSSKEGP 1369
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 33.9 bits (76), Expect = 0.13
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 34 AEGGDPLPQPSGTPTPSQPSAAMAA-----TDSMRGEAPGAETPSLRHR---GQAAQPEP 85
A+ P P P P P QP A A ++ P A+ P + + A P P
Sbjct: 25 AQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAP 84
Query: 86 STGFTATPPAPDSPQEPLVLRLK--FLNDSEQVARAWPHDTIGSLKRTQFPGR-EQQVRL 142
S A P+P +PQ+ +V+ + + SE V+ A P T +T P + QQV+
Sbjct: 85 SQPTGAPTPSP-APQQYIVVTVSEGAMRASETVSEASPGST---ASQTGVPTQVVQQVQG 140
Query: 143 IYQGQLLGDDTQTLGSLHLPPNCVLHCHVSTRVGPPNPPCPPGSEPGPSGLEI 195
Q L+ Q H+ P + + V + P + PG G ++
Sbjct: 141 TQQRLLVQTSVQAKPG-HVSPLQLTNIQVPQQALPTQRLVVQSAAPGSKGGQV 192
>gi|126362953 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 3 [Homo sapiens]
Length = 651
Score = 33.9 bits (76), Expect = 0.13
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 172 STRVGPPNPPCPP-GSEPGPS-----GLEIGSLLLPLLLLLLLLLWYCQIQYR 218
ST GP + P P GS+P G+ IG L+ +LLLLLLLL + +++R
Sbjct: 435 STSAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLLLFLILRHR 487
>gi|126362951 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 2 [Homo sapiens]
Length = 652
Score = 33.9 bits (76), Expect = 0.13
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 172 STRVGPPNPPCPP-GSEPGPS-----GLEIGSLLLPLLLLLLLLLWYCQIQYR 218
ST GP + P P GS+P G+ IG L+ +LLLLLLLL + +++R
Sbjct: 435 STSAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLLLFLILRHR 487
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 33.9 bits (76), Expect = 0.13
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 28 WVSTHTAEGG-DPLPQPSGTPTPSQPSAAMAATDSMRGEAPGAETPSLRHRGQAAQPEPS 86
WV A GG P P G P P P + + G P P +G A P+ S
Sbjct: 236 WVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFP----QGYGAPPQFS 291
Query: 87 TGFTATPPAPDSPQEP 102
G+ PP PD P
Sbjct: 292 FGYGPPPPPPDQFAPP 307
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,877,823
Number of Sequences: 37866
Number of extensions: 813750
Number of successful extensions: 9527
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 463
Number of HSP's that attempted gapping in prelim test: 7626
Number of HSP's gapped (non-prelim): 2255
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.