Guide to the Human Genome
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Name: BRMS1 Sequence: fasta or formatted (290aa) NCBI GI: 68348702
Description:

breast cancer metastasis suppressor 1 isoform 2

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Mammary Tissues

Other entries for this name:
alt prot [246aa] breast cancer metastasis suppressor 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         18           2
 C cysteine            2.1          6           2
 D aspartate           5.9         17           2
 E glutamate          14.1         41           4
 F phenylalanine       1.0          3           1
 G glycine             4.1         12           2
 H histidine           1.4          4           1
 I isoleucine          3.1          9           1
 K lysine              5.9         17           2
 L leucine            12.4         36           3
 M methionine          2.1          6           1
 N asparagine          0.7          2           1
 P proline             6.2         18           2
 Q glutamine           5.2         15           1
 R arginine            9.0         26           3
 S serine              9.7         28           2
 T threonine           2.4          7           1
 V valine              3.1          9           1
 W tryptophan          3.1          9           2
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   breast cancer metastasis suppressor 1 isoform 2 [Hom... 
BRMS1                 0.811   breast cancer metastasis suppressor 1 isoform 1 [Hom...
BRMS1L                0.405   breast cancer metastasis-suppressor 1-like 
SUDS3                 0.085   suppressor of defective silencing 3 
CGNL1                 0.035   cingulin-like 1 
CDC2L2                0.035   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.035   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.035   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.035   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.035   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.035   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.035   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.035   cell division cycle 2-like 1 (PITSLRE proteins) isof...
TRIM44                0.034   DIPB protein 
TTBK1                 0.032   tau tubulin kinase 1 
ODF2                  0.030   outer dense fiber of sperm tails 2 isoform 2 
ODF2                  0.030   outer dense fiber of sperm tails 2 isoform 1 
MYH3                  0.030   myosin, heavy chain 3, skeletal muscle, embryonic [H...
YTHDC1                0.030   splicing factor YT521-B isoform 2 
ARID4B                0.030   AT rich interactive domain 4B isoform 1 
YTHDC1                0.030   splicing factor YT521-B isoform 1 
MYH10                 0.030   myosin, heavy polypeptide 10, non-muscle 
MYT1L                 0.030   myelin transcription factor 1-like 
LOC728792             0.028   PREDICTED: hypothetical protein 
PELP1                 0.028   proline, glutamic acid and leucine rich protein 1 [...
MYT1                  0.027   myelin transcription factor 1 
CENPF                 0.027   centromere protein F 
MFAP1                 0.027   microfibrillar-associated protein 1 
WDR87                 0.027   NYD-SP11 protein 
GIGYF2                0.027   GRB10 interacting GYF protein 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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