Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 6715607
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6715607 G-gamma globin [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6715607 G-gamma globin [Homo sapiens] 300 3e-82
gi|28302131 A-gamma globin [Homo sapiens] 296 5e-81
gi|4885393 epsilon globin [Homo sapiens] 249 8e-67
gi|4504349 beta globin [Homo sapiens] 233 6e-62
gi|4504351 delta globin [Homo sapiens] 228 1e-60
gi|4504347 alpha 1 globin [Homo sapiens] 110 3e-25
gi|4504345 alpha 2 globin [Homo sapiens] 110 3e-25
gi|4885397 hemoglobin, zeta [Homo sapiens] 110 6e-25
gi|51510893 hemoglobin mu chain [Homo sapiens] 96 8e-21
gi|4885395 theta 1 globin [Homo sapiens] 95 2e-20
gi|19549331 cytoglobin [Homo sapiens] 74 6e-14
gi|44955888 myoglobin [Homo sapiens] 56 1e-08
gi|44955885 myoglobin [Homo sapiens] 56 1e-08
gi|4885477 myoglobin [Homo sapiens] 56 1e-08
gi|10864065 neuroglobin [Homo sapiens] 39 0.001
gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens] 29 1.2
gi|163644316 hypothetical protein LOC23255 [Homo sapiens] 28 2.1
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 28 2.8
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 28 2.8
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 28 2.8
>gi|6715607 G-gamma globin [Homo sapiens]
Length = 147
Score = 300 bits (768), Expect = 3e-82
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK
Sbjct: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
Query: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG
Sbjct: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
Query: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147
KEFTPEVQASWQKMVTGVASALSSRYH
Sbjct: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147
>gi|28302131 A-gamma globin [Homo sapiens]
Length = 147
Score = 296 bits (757), Expect = 5e-81
Identities = 145/147 (98%), Positives = 145/147 (98%)
Query: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK
Sbjct: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
Query: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
VKAHGKKVLTSLGDA KHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG
Sbjct: 61 VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
Query: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147
KEFTPEVQASWQKMVT VASALSSRYH
Sbjct: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147
>gi|4885393 epsilon globin [Homo sapiens]
Length = 147
Score = 249 bits (635), Expect = 8e-67
Identities = 117/147 (79%), Positives = 133/147 (90%)
Query: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
M HFT E+KA +TSLW K+NVE+AGGE LGRLLVVYPWTQRFFDSFGNLSS SAI+GNPK
Sbjct: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60
Query: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
VKAHGKKVLTS GDAIK++D+LK FA+LSELHCDKLHVDPENFKLLGNV+V +LA HFG
Sbjct: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
Query: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147
KEFTPEVQA+WQK+V+ VA AL+ +YH
Sbjct: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147
>gi|4504349 beta globin [Homo sapiens]
Length = 147
Score = 233 bits (593), Expect = 6e-62
Identities = 108/147 (73%), Positives = 128/147 (87%)
Query: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
M H T E+K+ +T+LWGKVNV++ GGE LGRLLVVYPWTQRFF+SFG+LS+ A+MGNPK
Sbjct: 1 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK 60
Query: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
VKAHGKKVL + D + HLD+LKGTFA LSELHCDKLHVDPENF+LLGNVLV VLA HFG
Sbjct: 61 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG 120
Query: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147
KEFTP VQA++QK+V GVA+AL+ +YH
Sbjct: 121 KEFTPPVQAAYQKVVAGVANALAHKYH 147
>gi|4504351 delta globin [Homo sapiens]
Length = 147
Score = 228 bits (582), Expect = 1e-60
Identities = 106/147 (72%), Positives = 127/147 (86%)
Query: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
M H T E+K + +LWGKVNV+ GGE LGRLLVVYPWTQRFF+SFG+LSS A+MGNPK
Sbjct: 1 MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK 60
Query: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
VKAHGKKVL + D + HLD+LKGTF+QLSELHCDKLHVDPENF+LLGNVLV VLA +FG
Sbjct: 61 VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG 120
Query: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147
KEFTP++QA++QK+V GVA+AL+ +YH
Sbjct: 121 KEFTPQMQAAYQKVVAGVANALAHKYH 147
>gi|4504347 alpha 1 globin [Homo sapiens]
Length = 142
Score = 110 bits (276), Expect = 3e-25
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 8 DKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHG 65
DK + + WGKV + G E L R+ + +P T+ +F F +LS SA +VK HG
Sbjct: 7 DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60
Query: 66 KKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTP 125
KKV +L +A+ H+DD+ + LS+LH KL VDP NFKLL + L+ LA H EFTP
Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
Query: 126 EVQASWQKMVTGVASALSSRY 146
V AS K + V++ L+S+Y
Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141
>gi|4504345 alpha 2 globin [Homo sapiens]
Length = 142
Score = 110 bits (276), Expect = 3e-25
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 8 DKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHG 65
DK + + WGKV + G E L R+ + +P T+ +F F +LS SA +VK HG
Sbjct: 7 DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60
Query: 66 KKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTP 125
KKV +L +A+ H+DD+ + LS+LH KL VDP NFKLL + L+ LA H EFTP
Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
Query: 126 EVQASWQKMVTGVASALSSRY 146
V AS K + V++ L+S+Y
Sbjct: 121 AVHASLDKFLASVSTVLTSKY 141
>gi|4885397 hemoglobin, zeta [Homo sapiens]
Length = 142
Score = 110 bits (274), Expect = 6e-25
Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 8/144 (5%)
Query: 5 TEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVK 62
T+ ++ I S+W K++ + G ETL RL + +P T+ +F F G+ +++
Sbjct: 4 TKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQLR 57
Query: 63 AHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKE 122
AHG KV+ ++GDA+K +DD+ G ++LSELH L VDP NFKLL + L+ LA F +
Sbjct: 58 AHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAD 117
Query: 123 FTPEVQASWQKMVTGVASALSSRY 146
FT E A+W K ++ V+S L+ +Y
Sbjct: 118 FTAEAHAAWDKFLSVVSSVLTEKY 141
>gi|51510893 hemoglobin mu chain [Homo sapiens]
Length = 141
Score = 96.3 bits (238), Expect = 8e-21
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 8/142 (5%)
Query: 7 EDKATITSLWGKVNVEDA--GGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAH 64
+++A I +W + +A G E L RL VYP T+ +F A+ ++ +H
Sbjct: 5 QERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLL------SH 58
Query: 65 GKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFT 124
G+++L ++G A++H+D+L+ + L++LH L VDP NF LL VLA H EFT
Sbjct: 59 GQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFT 118
Query: 125 PEVQASWQKMVTGVASALSSRY 146
++QA+W K +TGVA L+ +Y
Sbjct: 119 VQMQAAWDKFLTGVAVVLTEKY 140
>gi|4885395 theta 1 globin [Homo sapiens]
Length = 142
Score = 95.1 bits (235), Expect = 2e-20
Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 8/142 (5%)
Query: 7 EDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAH 64
ED+A + +LW K+ NV E L R + +P T+ +F S G+ +V+AH
Sbjct: 6 EDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF------SHLDLSPGSSQVRAH 59
Query: 65 GKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFT 124
G+KV +L A++ LDDL + LS LH +L VDP +F+LLG+ L+ LA H+ +F+
Sbjct: 60 GQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFS 119
Query: 125 PEVQASWQKMVTGVASALSSRY 146
P +QAS K ++ V SAL S Y
Sbjct: 120 PALQASLDKFLSHVISALVSEY 141
>gi|19549331 cytoglobin [Homo sapiens]
Length = 190
Score = 73.6 bits (179), Expect = 6e-14
Identities = 38/147 (25%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 5 TEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVK 62
+E ++ + ++W ++ N ED G L R V +P +++F F ++ + +P+++
Sbjct: 20 SEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLR 79
Query: 63 AHGKKVLTSLGDAIKHLDD---LKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHF 119
H +V+ +L +++L D + A + + H K V+P FK+L V++ V+A F
Sbjct: 80 KHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEF 139
Query: 120 GKEFTPEVQASWQKMVTGVASALSSRY 146
+F PE Q +W K+ + S +++ Y
Sbjct: 140 ASDFPPETQRAWAKLRGLIYSHVTAAY 166
>gi|44955888 myoglobin [Homo sapiens]
Length = 154
Score = 55.8 bits (133), Expect = 1e-08
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 12 ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
+ ++WGKV ++ G E L RL +P T FD F +L S + + +K HG VL
Sbjct: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
Query: 70 TSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
T+LG +K + L++ H K + + + + ++ VL +F + Q
Sbjct: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
Query: 130 SWQKMVTGVASALSSRY 146
+ K + ++S Y
Sbjct: 131 AMNKALELFRKDMASNY 147
>gi|44955885 myoglobin [Homo sapiens]
Length = 154
Score = 55.8 bits (133), Expect = 1e-08
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 12 ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
+ ++WGKV ++ G E L RL +P T FD F +L S + + +K HG VL
Sbjct: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
Query: 70 TSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
T+LG +K + L++ H K + + + + ++ VL +F + Q
Sbjct: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
Query: 130 SWQKMVTGVASALSSRY 146
+ K + ++S Y
Sbjct: 131 AMNKALELFRKDMASNY 147
>gi|4885477 myoglobin [Homo sapiens]
Length = 154
Score = 55.8 bits (133), Expect = 1e-08
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 12 ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69
+ ++WGKV ++ G E L RL +P T FD F +L S + + +K HG VL
Sbjct: 11 VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
Query: 70 TSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129
T+LG +K + L++ H K + + + + ++ VL +F + Q
Sbjct: 71 TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
Query: 130 SWQKMVTGVASALSSRY 146
+ K + ++S Y
Sbjct: 131 AMNKALELFRKDMASNY 147
>gi|10864065 neuroglobin [Homo sapiens]
Length = 151
Score = 39.3 bits (90), Expect = 0.001
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 50 SSASAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGT---FAQLSELHCDKLHVDPENFKL 106
SS + +P+ H +KV+ + A+ +++DL A L H + V +F
Sbjct: 50 SSPEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKH-RAVGVKLSSFST 108
Query: 107 LGNVLVTVLAIHFGKEFTPEVQASWQKMVTGVASALS 143
+G L+ +L G FTP +A+W ++ V A+S
Sbjct: 109 VGESLLYMLEKCLGPAFTPATRAAWSQLYGAVVQAMS 145
>gi|171846278 leucine-rich repeat kinase 2 [Homo sapiens]
Length = 2527
Score = 29.3 bits (64), Expect = 1.2
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 49 LSSASAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG 108
L++ + +GNP ++ G KV++S+ L+ L A S LH +++ D + + LG
Sbjct: 547 LAALNRFIGNPGIQKCGLKVISSIVHFPDALEMLSLEGAMDSVLHTLQMYPDDQEIQCLG 606
Query: 109 NVLVTVL 115
L+ L
Sbjct: 607 LSLIGYL 613
>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
Length = 1586
Score = 28.5 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 80 DDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
++LK Q+SEL L + EN LL N+ LA H G
Sbjct: 336 EELKSARLQISELSGKVLKLQHENHALLSNIQRCDLAAHLG 376
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 28.1 bits (61), Expect = 2.8
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 8 DKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKK 67
D T+ G V +++ G T G+LL + Q F S L+ S+ + + ++ + G +
Sbjct: 229 DGQPATTFLGSVELQE-GEATAGQLLDIL---QAFGVSAPKLAWLSSSLPSERLGSVGPQ 284
Query: 68 VLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG---NVLVTVLAIHFG--KE 122
L+ T L+ELHC DPE LG ++L + +H G
Sbjct: 285 --------------LRATCPLLAELHCLPGRTDPEPPAYLGQYESILDALFRLHGGPSSH 330
Query: 123 FTPEVQAS 130
PE++A+
Sbjct: 331 LVPELRAA 338
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 28.1 bits (61), Expect = 2.8
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 8 DKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKK 67
D T+ G V +++ G T G+LL + Q F S L+ S+ + + ++ + G +
Sbjct: 229 DGQPATTFLGSVELQE-GEATAGQLLDIL---QAFGVSAPKLAWLSSSLPSERLGSVGPQ 284
Query: 68 VLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG---NVLVTVLAIHFG--KE 122
L+ T L+ELHC DPE LG ++L + +H G
Sbjct: 285 --------------LRATCPLLAELHCLPGRTDPEPPAYLGQYESILDALFRLHGGPSSH 330
Query: 123 FTPEVQAS 130
PE++A+
Sbjct: 331 LVPELRAA 338
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 28.1 bits (61), Expect = 2.8
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 8 DKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKK 67
D T+ G V +++ G T G+LL + Q F S L+ S+ + + ++ + G +
Sbjct: 229 DGQPATTFLGSVELQE-GEATAGQLLDIL---QAFGVSAPKLAWLSSSLPSERLGSVGPQ 284
Query: 68 VLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLG---NVLVTVLAIHFG--KE 122
L+ T L+ELHC DPE LG ++L + +H G
Sbjct: 285 --------------LRATCPLLAELHCLPGRTDPEPPAYLGQYESILDALFRLHGGPSSH 330
Query: 123 FTPEVQAS 130
PE++A+
Sbjct: 331 LVPELRAA 338
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,217,364
Number of Sequences: 37866
Number of extensions: 191024
Number of successful extensions: 428
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 20
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.