Search of human proteins with 66932963

Search of human proteins with 66932963

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66932963 histamine N-methyltransferase isoform 2 [Homo
sapiens]
         (51 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|66932963 histamine N-methyltransferase isoform 2 [Homo sapiens]    112   6e-26
gi|66932965 histamine N-methyltransferase isoform 3 [Homo sapiens]     99   9e-22
gi|5901970 histamine N-methyltransferase isoform 1 [Homo sapiens]      99   9e-22
gi|124517687 zinc finger protein 560 [Homo sapiens]                    27   4.5  

>gi|66932963 histamine N-methyltransferase isoform 2 [Homo
          sapiens]
          Length = 51

 Score =  112 bits (280), Expect = 6e-26
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRYQNCC 51
          MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRYQNCC
Sbjct: 1  MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRYQNCC 51


>gi|66932965 histamine N-methyltransferase isoform 3 [Homo
          sapiens]
          Length = 126

 Score = 98.6 bits (244), Expect = 9e-22
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 1  MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR 46
          MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR
Sbjct: 1  MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR 46


>gi|5901970 histamine N-methyltransferase isoform 1 [Homo sapiens]
          Length = 292

 Score = 98.6 bits (244), Expect = 9e-22
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 1  MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR 46
          MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR
Sbjct: 1  MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGR 46


>gi|124517687 zinc finger protein 560 [Homo sapiens]
          Length = 790

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 7   SLFSDHGKYVESFRRFLNHSTEHQCMQE 34
           S+FS HGK   SFR  LN   + +C Q+
Sbjct: 265 SVFSKHGK---SFRLILNVQVQRKCTQD 289


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,733,679
Number of Sequences: 37866
Number of extensions: 45251
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 18,247,518
effective HSP length: 25
effective length of query: 26
effective length of database: 17,300,868
effective search space: 449822568
effective search space used: 449822568
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.