Guide to the Human Genome
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Name: SDCCAG10 Sequence: fasta or formatted (472aa) NCBI GI: 64276486
Description:

serologically defined colon cancer antigen 10

Referenced in:

Stomach, Small Intestine, and Colon
Peptidylprolyl Isomerases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         29           2
 C cysteine            0.6          3           1
 D aspartate           7.6         36           3
 E glutamate          12.7         60           6
 F phenylalanine       3.6         17           3
 G glycine             5.7         27           2
 H histidine           2.1         10           1
 I isoleucine          4.0         19           2
 K lysine             11.2         53           2
 L leucine             7.0         33           2
 M methionine          1.7          8           1
 N asparagine          4.4         21           2
 P proline             4.4         21           2
 Q glutamine           3.4         16           2
 R arginine            6.6         31           3
 S serine              7.2         34           2
 T threonine           3.8         18           2
 V valine              5.3         25           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.9          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serologically defined colon cancer antigen 10 
PPIL2                 0.145   peptidylprolyl isomerase-like 2 isoform b 
PPIL2                 0.145   peptidylprolyl isomerase-like 2 isoform a 
PPIL2                 0.145   peptidylprolyl isomerase-like 2 isoform a 
PPIL3                 0.130   peptidylprolyl isomerase-like 3 isoform PPIL3b [Homo...
PPIL3                 0.130   peptidylprolyl isomerase-like 3 isoform PPIL3b [Homo...
PPIL1                 0.130   peptidylprolyl isomerase-like 1 
PPIL4                 0.119   peptidylprolyl isomerase-like 4 
PPWD1                 0.116   peptidylprolyl isomerase domain and WD repeat contai...
PPIG                  0.098   peptidylprolyl isomerase G 
NKTR                  0.087   natural killer-tumor recognition sequence 
PPIH                  0.082   peptidylprolyl isomerase H 
PPIC                  0.082   peptidylprolyl isomerase C 
PPIL6                 0.077   peptidylprolyl isomerase-like 6 isoform 1 
PPIL6                 0.077   peptidylprolyl isomerase-like 6 isoform 2 
PPIB                  0.077   peptidylprolyl isomerase B precursor 
PPIE                  0.075   peptidylprolyl isomerase E isoform 3 
PPIE                  0.075   peptidylprolyl isomerase E isoform 1 
PPIA                  0.075   peptidylprolyl isomerase A 
RANBP2                0.074   RAN binding protein 2 
PPIE                  0.072   peptidylprolyl isomerase E isoform 2 
PPID                  0.072   peptidylprolyl isomerase D 
PPIL3                 0.071   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
PPIF                  0.070   peptidylprolyl isomerase F precursor 
PPIAL4E               0.069   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC650157             0.068   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIAL4G               0.067   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
LOC650157             0.067   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.067   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC643997             0.064   PREDICTED: similar to TRIMCyp isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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