Search of human proteins with 62988331

Search of human proteins with 62988331

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62988331 hypothetical protein LOC55780 [Homo sapiens]
         (678 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62988331 hypothetical protein LOC55780 [Homo sapiens]             1359   0.0  
gi|17978477 vacuolar protein sorting 11 [Homo sapiens]                 33   0.66 
gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo s...    33   0.86 
gi|110825984 malignant fibrous histiocytoma amplified sequence 1...    32   2.5  
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto...    32   2.5  
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor...    30   5.6  
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso...    30   5.6  
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]    30   7.3  
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]    30   7.3  
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]    30   7.3  
gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens]                30   9.6  
gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens]                30   9.6  
gi|169164590 PREDICTED: similar to UNCoordinated family member (...    30   9.6  

>gi|62988331 hypothetical protein LOC55780 [Homo sapiens]
          Length = 678

 Score = 1359 bits (3517), Expect = 0.0
 Identities = 678/678 (100%), Positives = 678/678 (100%)

Query: 1   MEVLIGDPITTCLSPSVYDIICNLGFQLRENCDINSIVTQNGEVCWKTITDCVSYTESEQ 60
           MEVLIGDPITTCLSPSVYDIICNLGFQLRENCDINSIVTQNGEVCWKTITDCVSYTESEQ
Sbjct: 1   MEVLIGDPITTCLSPSVYDIICNLGFQLRENCDINSIVTQNGEVCWKTITDCVSYTESEQ 60

Query: 61  GLDYWGSVRLLGPVCEAVHSHFLSLTKGQFEIRYAPWFQWTSFPELFPEIFDALESLQSP 120
           GLDYWGSVRLLGPVCEAVHSHFLSLTKGQFEIRYAPWFQWTSFPELFPEIFDALESLQSP
Sbjct: 61  GLDYWGSVRLLGPVCEAVHSHFLSLTKGQFEIRYAPWFQWTSFPELFPEIFDALESLQSP 120

Query: 121 AISLSLMKLTSCLERALGDVFLLIGKECPFLLRDLLSSEELAQVFSQSVMNVLKVFVGSP 180
           AISLSLMKLTSCLERALGDVFLLIGKECPFLLRDLLSSEELAQVFSQSVMNVLKVFVGSP
Sbjct: 121 AISLSLMKLTSCLERALGDVFLLIGKECPFLLRDLLSSEELAQVFSQSVMNVLKVFVGSP 180

Query: 181 CGLNLRNVLWHGFASPEEIPPKYCSMMILLTAGLGQLLKSYLQNTKLTLAHRSFISLTNL 240
           CGLNLRNVLWHGFASPEEIPPKYCSMMILLTAGLGQLLKSYLQNTKLTLAHRSFISLTNL
Sbjct: 181 CGLNLRNVLWHGFASPEEIPPKYCSMMILLTAGLGQLLKSYLQNTKLTLAHRSFISLTNL 240

Query: 241 EDLIVFPDVTYEVLSVLEEVMMKSAFILKIMLPYWEVALVKFKSHRFADCAILLLTQLET 300
           EDLIVFPDVTYEVLSVLEEVMMKSAFILKIMLPYWEVALVKFKSHRFADCAILLLTQLET
Sbjct: 241 EDLIVFPDVTYEVLSVLEEVMMKSAFILKIMLPYWEVALVKFKSHRFADCAILLLTQLET 300

Query: 301 GLRNVFATLNRCPKRLLTAESTALYTTFDQILAKHLNDGKINQLPLFLGEPAMEFLWDFL 360
           GLRNVFATLNRCPKRLLTAESTALYTTFDQILAKHLNDGKINQLPLFLGEPAMEFLWDFL
Sbjct: 301 GLRNVFATLNRCPKRLLTAESTALYTTFDQILAKHLNDGKINQLPLFLGEPAMEFLWDFL 360

Query: 361 NHQEGPRIRDHLSHGEINLHEFSKETTNQLLAFSLVLLLRFVDDCLLSVFKEKSAVELLI 420
           NHQEGPRIRDHLSHGEINLHEFSKETTNQLLAFSLVLLLRFVDDCLLSVFKEKSAVELLI
Sbjct: 361 NHQEGPRIRDHLSHGEINLHEFSKETTNQLLAFSLVLLLRFVDDCLLSVFKEKSAVELLI 420

Query: 421 SLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNACHSLIT 480
           SLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNACHSLIT
Sbjct: 421 SLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNACHSLIT 480

Query: 481 KMTDELYHHMPENRCVLKDLDRLPTETWPQLLRELCSTPVPTLFCPRIVLEVLVVLRSIS 540
           KMTDELYHHMPENRCVLKDLDRLPTETWPQLLRELCSTPVPTLFCPRIVLEVLVVLRSIS
Sbjct: 481 KMTDELYHHMPENRCVLKDLDRLPTETWPQLLRELCSTPVPTLFCPRIVLEVLVVLRSIS 540

Query: 541 EQCRRVSSQVTVASELRHRQWVERTLRSRQRQNYLRMWSSIRLLSPVLSLILLLIALELV 600
           EQCRRVSSQVTVASELRHRQWVERTLRSRQRQNYLRMWSSIRLLSPVLSLILLLIALELV
Sbjct: 541 EQCRRVSSQVTVASELRHRQWVERTLRSRQRQNYLRMWSSIRLLSPVLSLILLLIALELV 600

Query: 601 NIHAVCGKNAHEYQQYLKFVKSILQYTENLVAYTSYEKNKWNETINLTHTALLKMWTFSE 660
           NIHAVCGKNAHEYQQYLKFVKSILQYTENLVAYTSYEKNKWNETINLTHTALLKMWTFSE
Sbjct: 601 NIHAVCGKNAHEYQQYLKFVKSILQYTENLVAYTSYEKNKWNETINLTHTALLKMWTFSE 660

Query: 661 KKQMLIHLAKKSTSKVLL 678
           KKQMLIHLAKKSTSKVLL
Sbjct: 661 KKQMLIHLAKKSTSKVLL 678


>gi|17978477 vacuolar protein sorting 11 [Homo sapiens]
          Length = 941

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 533 LVVLRSISEQCRRVSSQVTVASELRHRQWVERTLRSRQRQNYLRMWSSIRLLSPVLSLIL 592
           L V+R    Q  +  SQ     ELR R++ E T R RQ    L+  +S ++        +
Sbjct: 768 LSVIRDYLVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELK--ASPKIFQKT-KCSI 824

Query: 593 LLIALELVNIHAVCGKNAHEY 613
              ALEL ++H +CG + H++
Sbjct: 825 CNSALELPSVHFLCGHSFHQH 845


>gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo
            sapiens]
          Length = 2701

 Score = 33.1 bits (74), Expect = 0.86
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 599  LVNIHAVCGKNAHEYQQYLKFVKSILQYTENL-VAYTSYEKN--KWNETINLTHTALLKM 655
            L+ +  +C +N     Q+ + +K++  ++  L +    YEKN  K NE +NL HT L   
Sbjct: 1186 LIRLSKLCVQNKKCRNQHQRLLKNMGAHSVVLDLLQIPYEKNDEKMNEVMNLAHTFLQNF 1245

Query: 656  WTFSEKKQMLIH 667
               + + Q+L+H
Sbjct: 1246 CRGNPQNQVLLH 1257


>gi|110825984 malignant fibrous histiocytoma amplified sequence 1
           [Homo sapiens]
          Length = 1052

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 210 LTAGLGQLLKSYLQNTKLTLAHRSFISLTNLEDLIV 245
           L +GLG+LL  +L N ++     S + LT LE+L++
Sbjct: 314 LISGLGRLLTLWLDNNRIRYLPDSIVELTGLEELVL 349


>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
           factor-associated, 170kDa [Homo sapiens]
          Length = 1849

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 204 CSMMILLTAGLGQLLKSYLQNTKLTLAHRSFISLTNLEDLIVFPDVTYEVLSVLEEVMMK 263
           C  +I   A +   + + + N  LT+   S +  T   +     D+  +VL  L+    +
Sbjct: 778 CKQLISSLADVHIEVGNRVNNNVLTIDQASDLVTTVFNEATSSFDLNPQVLQQLDSKRQQ 837

Query: 264 SAFILKIMLPYWEVALVKFKSHRFADCAILLLTQLETGLRNVFATLNRCPKRLLTAESTA 323
               +      W+V  ++ + H FA CA++ L QL   L  +   L    K+    E+T 
Sbjct: 838 VQMTVTETNQEWQV--LQLRVHTFAACAVVSLQQLPEKLNPIIKPLMETIKK---EENTL 892

Query: 324 LYTTFDQILAKHL 336
           +     Q +AK L
Sbjct: 893 VQNYAAQCIAKLL 905


>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
           [Homo sapiens]
          Length = 215

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 230 AHRSFISLTNLEDLIVFPDVTYEVLSVLEEVMMKSAFILKIMLPYW 275
           AHR F+  T L  L V  +   +  SV+ E+MM   +IL + L  W
Sbjct: 130 AHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMM---YILLVFLTLW 172


>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
           [Homo sapiens]
          Length = 215

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 230 AHRSFISLTNLEDLIVFPDVTYEVLSVLEEVMMKSAFILKIMLPYW 275
           AHR F+  T L  L V  +   +  SV+ E+MM   +IL + L  W
Sbjct: 130 AHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMM---YILLVFLTLW 172


>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 415 AVELLISLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNA 474
           ++E  ++ A+  +++    F LKK+ L+CEES R        +EL +  V  ED+    A
Sbjct: 298 SLEDALAEAQRVNTKSQSAFDLKKKNLACEESKR--------KELEKNMV--EDSKTLAA 347

Query: 475 CHSLITKMTDELY 487
               + K+TD L+
Sbjct: 348 KEKEVKKITDGLH 360


>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 415 AVELLISLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNA 474
           ++E  ++ A+  +++    F LKK+ L+CEES R        +EL +  V  ED+    A
Sbjct: 298 SLEDALAEAQRVNTKSQSAFDLKKKNLACEESKR--------KELEKNMV--EDSKTLAA 347

Query: 475 CHSLITKMTDELY 487
               + K+TD L+
Sbjct: 348 KEKEVKKITDGLH 360


>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 415 AVELLISLAEGYSSRCHPVFQLKKQVLSCEESIRVWALLPFPEELTRQAVRLEDNSETNA 474
           ++E  ++ A+  +++    F LKK+ L+CEES R        +EL +  V  ED+    A
Sbjct: 298 SLEDALAEAQRVNTKSQSAFDLKKKNLACEESKR--------KELEKNMV--EDSKTLAA 347

Query: 475 CHSLITKMTDELY 487
               + K+TD L+
Sbjct: 348 KEKEVKKITDGLH 360


>gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens]
          Length = 509

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 18  YDIICNLGFQLRE-NCDINSIVTQNGEVCWKTITDCVSYTESEQGLDYWGSVRLLGPVCE 76
           ++I+ N  FQ++      NS+  +  E+  K   DC+S   SE    Y  +++L+G + E
Sbjct: 80  HEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLVGEIKE 139

Query: 77  AVHSHFL 83
            + S  L
Sbjct: 140 TLLSFLL 146


>gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens]
          Length = 509

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 18  YDIICNLGFQLRE-NCDINSIVTQNGEVCWKTITDCVSYTESEQGLDYWGSVRLLGPVCE 76
           ++I+ N  FQ++      NS+  +  E+  K   DC+S   SE    Y  +++L+G + E
Sbjct: 80  HEIVVNGDFQIKPVELPENSLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLVGEIKE 139

Query: 77  AVHSHFL 83
            + S  L
Sbjct: 140 TLLSFLL 146


>gi|169164590 PREDICTED: similar to UNCoordinated family member
           (unc-44) [Homo sapiens]
          Length = 163

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 459 LTRQAVRLEDNSETNACHSLITKMTDELYHHMPENRCVLK---DLDRLPTETWPQLLREL 515
           LTR  +   D  E  A H        E+ H +   RC L      DR P     QL +E 
Sbjct: 53  LTRYDINKRDRKERTALHLACATGQPEMVHLLVSRRCELNLCDREDRTPLIKAVQLRQEA 112

Query: 516 CST 518
           C+T
Sbjct: 113 CAT 115


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,212,687
Number of Sequences: 37866
Number of extensions: 1011958
Number of successful extensions: 2929
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2923
Number of HSP's gapped (non-prelim): 14
length of query: 678
length of database: 18,247,518
effective HSP length: 109
effective length of query: 569
effective length of database: 14,120,124
effective search space: 8034350556
effective search space used: 8034350556
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.