Guide to the Human Genome
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Name: VANGL2 Sequence: fasta or formatted (521aa) NCBI GI: 62955805
Description:

vang-like 2

Referenced in:

Planar Cell Polarity
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         39           4
 C cysteine            0.8          4           1
 D aspartate           4.6         24           2
 E glutamate           7.1         37           3
 F phenylalanine       4.8         25           2
 G glycine             4.6         24           2
 H histidine           3.3         17           1
 I isoleucine          2.9         15           1
 K lysine              5.4         28           2
 L leucine            12.1         63           3
 M methionine          1.7          9           1
 N asparagine          2.3         12           2
 P proline             4.0         21           2
 Q glutamine           3.8         20           2
 R arginine            8.4         44           3
 S serine              8.1         42           2
 T threonine           5.2         27           3
 V valine              8.4         44           2
 W tryptophan          1.3          7           1
 Y tyrosine            3.6         19           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vang-like 2 
VANGL1                0.730   vang-like 1 
CROP                  0.009   cisplatin resistance-associated overexpressed protei...
CROP                  0.009   cisplatin resistance-associated overexpressed protei...
PLEC1                 0.008   plectin 1 isoform 11 
PLEC1                 0.008   plectin 1 isoform 10 
PLEC1                 0.008   plectin 1 isoform 8 
PLEC1                 0.008   plectin 1 isoform 7 
PLEC1                 0.008   plectin 1 isoform 6 
PLEC1                 0.008   plectin 1 isoform 3 
PLEC1                 0.008   plectin 1 isoform 2 
PLEC1                 0.008   plectin 1 isoform 1 
TRIM16                0.008   tripartite motif-containing 16 
EIF5                  0.008   eukaryotic translation initiation factor 5 
EIF5                  0.008   eukaryotic translation initiation factor 5 
TOPORS                0.007   topoisomerase I binding, arginine/serine-rich 
ZC3H13                0.007   zinc finger CCCH-type containing 13 
RBMXL3                0.007   RNA binding motif protein, X-linked-like 3 
TRERF1                0.007   transcriptional regulating factor 1 
APLP2                 0.007   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.007   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.007   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.007   amyloid beta (A4) precursor-like protein 2 isoform 1 ...
MACF1                 0.006   microfilament and actin filament cross-linker protei...
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 1...
MAST3                 0.006   microtubule associated serine/threonine kinase 3 [H...
MLLT4                 0.005   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.005   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.005   myeloid/lymphoid or mixed-lineage leukemia (trithora...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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