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Search of human proteins with 61635915
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61635915 membrane-associated transporter protein isoform a
[Homo sapiens]
(530 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61635915 membrane-associated transporter protein isoform a [H... 1077 0.0
gi|61636000 membrane-associated transporter protein isoform b [H... 931 0.0
gi|122937193 DNB5 [Homo sapiens] 217 2e-56
gi|122937259 solute carrier family 45, member 4 [Homo sapiens] 183 3e-46
gi|14916437 prostein [Homo sapiens] 176 6e-44
gi|194578891 abhydrolase domain-containing protein 1 [Homo sapiens] 32 1.1
gi|4505835 polycystin 2 [Homo sapiens] 30 4.2
gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens] 30 5.5
gi|6912736 transient receptor potential cation channel, subfamil... 29 9.3
gi|209863032 transient receptor potential cation channel, subfam... 29 9.3
gi|209863030 transient receptor potential cation channel, subfam... 29 9.3
gi|209863028 transient receptor potential cation channel, subfam... 29 9.3
gi|209863026 transient receptor potential cation channel, subfam... 29 9.3
gi|209863024 transient receptor potential cation channel, subfam... 29 9.3
gi|7706747 transient receptor potential cation channel, subfamil... 29 9.3
gi|40786408 SFT2 domain containing 2 [Homo sapiens] 29 9.3
gi|94721311 hippocampus abundant transcript-like 1 [Homo sapiens] 29 9.3
>gi|61635915 membrane-associated transporter protein isoform a [Homo
sapiens]
Length = 530
Score = 1077 bits (2784), Expect = 0.0
Identities = 530/530 (100%), Positives = 530/530 (100%)
Query: 1 MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60
MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL
Sbjct: 1 MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60
Query: 61 LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY
Sbjct: 61 LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
Query: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL
Sbjct: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
Query: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA
Sbjct: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
Query: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300
PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA
Sbjct: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300
Query: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360
MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF
Sbjct: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360
Query: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420
LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN
Sbjct: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420
Query: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKERQQAPGGDPDNSVRGKGMDCATLT 480
VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKERQQAPGGDPDNSVRGKGMDCATLT
Sbjct: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKERQQAPGGDPDNSVRGKGMDCATLT 480
Query: 481 CMVQLAQILVGGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFVRYVD 530
CMVQLAQILVGGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFVRYVD
Sbjct: 481 CMVQLAQILVGGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFVRYVD 530
>gi|61636000 membrane-associated transporter protein isoform b [Homo
sapiens]
Length = 460
Score = 931 bits (2406), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60
MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL
Sbjct: 1 MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVL 60
Query: 61 LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY
Sbjct: 61 LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
Query: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL
Sbjct: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
Query: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA
Sbjct: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
Query: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300
PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA
Sbjct: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRA 300
Query: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360
MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF
Sbjct: 301 MTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEF 360
Query: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420
LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN
Sbjct: 361 LIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPN 420
Query: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKE 456
VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKE
Sbjct: 421 VYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKE 456
>gi|122937193 DNB5 [Homo sapiens]
Length = 748
Score = 217 bits (552), Expect = 2e-56
Identities = 111/238 (46%), Positives = 151/238 (63%), Gaps = 6/238 (2%)
Query: 28 PKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLYSIVWFLSPILGFLLQPV 87
P+R L+ + +FG EF YA+E AYVTPVLL +GLP LYS+VWF+SPILGFLLQP+
Sbjct: 80 PQRSFRELLFNGCILFGIEFSYAMETAYVTPVLLQMGLPDQLYSLVWFISPILGFLLQPL 139
Query: 88 VGSASDHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVWAISVTMI 147
+G+ SD C SR+GRRRP+IL L + L+G++L LNG + AL A+ W + +T+
Sbjct: 140 LGAWSDRCTSRFGRRRPFILVLAIGALLGLSLLLNGRDIGIAL-ADVTGNHKWGLLLTVC 198
Query: 148 GVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYLLGAIDWAHLEL 207
GVVL DF+AD D P AY+ DVCS D+++GL+ HAL G GG GY++G I W
Sbjct: 199 GVVLMDFSADSADNPSHAYMMDVCSPADQDRGLNIHALLAGLGGGFGYVVGGIHWDKTGF 258
Query: 208 GRLLGTEFQVMFFFSALVLTLCFTVHLCSISEAPL-----TEVAKGIPPQQTPQDPPL 260
GR LG + +V++ F+A+ L++ + L SI E PL A P P PP+
Sbjct: 259 GRALGGQLRVIYLFTAVTLSVTTVLTLVSIPERPLRPPSEKRAAMKSPSLPLPPSPPV 316
Score = 183 bits (465), Expect = 3e-46
Identities = 89/235 (37%), Positives = 142/235 (60%), Gaps = 5/235 (2%)
Query: 294 AEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYS 353
+E+ + +++ L + NMP R LC++H +GW +F +LF+TDFMG++V++GDP +
Sbjct: 500 SERAEQPLSVGRLCSTICNMPKALRTLCVNHFLGWLSFEGMLLFYTDFMGEVVFQGDPKA 559
Query: 354 AHNSTEFLIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTG 413
H S + Y GV +GCWG CI + ++ YS + L ++ ++ LYF YL FGLGTG
Sbjct: 560 PHTSEAYQKYNSGVTMGCWGMCIYAFSAAFYSAILEKLEEFLSVRTLYFIAYLAFGLGTG 619
Query: 414 FIGLFPNVYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKERQQAPGGDPDNSVRGKG 473
L N+Y L LC +G++ STL T+P++L+ +Y+ + ++ G D + RG G
Sbjct: 620 LATLSRNLYVVLSLCITYGILFSTLCTLPYSLLCDYY-----QSKKFAGSSADGTRRGMG 674
Query: 474 MDCATLTCMVQLAQILVGGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFVRY 528
+D + L+C LAQILV LG L + G+ V+ +S V+ +GC + +LFV Y
Sbjct: 675 VDISLLSCQYFLAQILVSLVLGPLTSAVGSANGVMYFSSLVSFLGCLYSSLFVIY 729
>gi|122937259 solute carrier family 45, member 4 [Homo sapiens]
Length = 798
Score = 183 bits (465), Expect = 3e-46
Identities = 93/209 (44%), Positives = 132/209 (63%), Gaps = 7/209 (3%)
Query: 61 LSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALY 120
L GLP YS+ WFLSPILG + P++GSASD C WGRRRP+IL L V +L G+AL+
Sbjct: 27 LQKGLPEQYYSLTWFLSPILGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLFGVALF 86
Query: 121 LNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGL 180
LNG+ + AL P R+ + I +T++GVV+ DF+AD +GPI+AYL DV ++++ L
Sbjct: 87 LNGSAIGLALGDVPNRQPI-GIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMAL 145
Query: 181 HYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEA 240
+ HA G GGA+GY+LG +DW LG T+ QV+FFF+A++ T+ +HL SI E
Sbjct: 146 NIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIIFTVSVALHLFSIDEE 205
Query: 241 PLTEVAKGIPPQQTPQDPPLSSDGMYEYG 269
+ P Q+ + P + DG +G
Sbjct: 206 QYS------PQQERSAEEPGALDGGEPHG 228
Score = 159 bits (403), Expect = 5e-39
Identities = 84/237 (35%), Positives = 136/237 (57%), Gaps = 7/237 (2%)
Query: 294 AEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYS 353
+E+ T++ L +++ MP LC+ HL+ W + ++ +F+TDFMGQ+++ GDP +
Sbjct: 434 SEEGEGETTVRLLWLSMLKMPRELMRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGDPKA 493
Query: 354 AHNSTEFLIYERGVEVGCWGFCINSVFSSLYS-YFQKVLVSY-IGLKGLYFTGYLLFGLG 411
NST + Y GV++GCWG I + ++ S QK L +Y + ++ +Y G L F +G
Sbjct: 494 PSNSTAWQAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSVRVIYVLGTLGFSVG 553
Query: 412 TGFIGLFPNVYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKERQQAPGGDPDNSVRG 471
T + +FPNVY +V S G++S ++ P+ L+ +YH + +Q P NS RG
Sbjct: 554 TAVMAMFPNVYVAMVTISTMGIVSMSISYCPYALLGQYH-----DIKQYIHHSPGNSKRG 608
Query: 472 KGMDCATLTCMVQLAQILVGGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFVRY 528
G+DCA L+C V ++QILV LG +V+ GTV V+ + AS + +G V Y
Sbjct: 609 FGIDCAILSCQVYISQILVASALGGVVDAVGTVRVIPMVASVGSFLGFLTATFLVIY 665
>gi|14916437 prostein [Homo sapiens]
Length = 553
Score = 176 bits (445), Expect = 6e-44
Identities = 127/445 (28%), Positives = 199/445 (44%), Gaps = 41/445 (9%)
Query: 33 SRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLYSIVWFLSPILGFLLQPVVGSAS 92
++L++ ++ FG E C A YV P+LL VG+ ++V + P+LG + P++GSAS
Sbjct: 16 AQLLLVNLLTFGLEVCLAAGITYVPPLLLEVGVEEKFMTMVLGIGPVLGLVCVPLLGSAS 75
Query: 93 DHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVWAISVTMIGVVLF 152
DH R R+GRRRP+I L + +L+ + L + L +PR +++ ++GV L
Sbjct: 76 DHWRGRYGRRRPFIWALSLGILLSLFLIPRAGWLAGLLCPDPR---PLELALLILGVGLL 132
Query: 153 DFAADFIDGPIKAYLFDVCSHQDK-EKGLHYHALFTGFGGALGYLLGAIDWAHLELGRLL 211
DF P++A L D+ D + +A GG LGYLL AIDW L L
Sbjct: 133 DFCGQVCFTPLEALLSDLFRDPDHCRQAYSVYAFMISLGGCLGYLLPAIDWDTSALAPYL 192
Query: 212 GTEFQVMFFFSALVLTLCFTVHLCSISEAPL--TEVAKGI-PPQQTPQDPPLSSDGMYEY 268
GT+ + +F L+ C L EA L TE A+G+ P +P P +
Sbjct: 193 GTQEECLFGLLTLIFLTCVAATLLVAEEAALGPTEPAEGLSAPSLSPHCCPCRA------ 246
Query: 269 GSIEKVKNGYVNPELAMQGAKNKNHAEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGW 328
LA + L L + MP R L ++ L W
Sbjct: 247 -------------RLAFRNL-----------GALLPRLHQLCCRMPRTLRRLFVAELCSW 282
Query: 329 TAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEFLIYERGVEVGCWGFCINSVFSSLYSYFQ 388
A ++ LF+TDF+G+ +Y+G P + + Y+ GV +G G + S ++S
Sbjct: 283 MALMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAISLVFSLVM 342
Query: 389 KVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPNVYSTLVLCSLFGVMSSTLYTVPFNLITE 448
LV G + +Y F + G L +V +L G S L +P+ L +
Sbjct: 343 DRLVQRFGTRAVYLASVAAFPVAAGATCLSHSVAVVTASAALTGFTFSALQILPYTLASL 402
Query: 449 YHREEE----KERQQAPGGDPDNSV 469
YHRE++ K R G ++S+
Sbjct: 403 YHREKQVFLPKYRGDTGGASSEDSL 427
>gi|194578891 abhydrolase domain-containing protein 1 [Homo sapiens]
Length = 405
Score = 32.3 bits (72), Expect = 1.1
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 132 ANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGG 191
A+PR K+ AI + VL+ AAD P+ A H + L T GG
Sbjct: 308 ASPRTKID-AIRIP----VLYLSAADDPFSPVCALPIQAAQHSP-----YVALLITARGG 357
Query: 192 ALGYLLGAIDWAHLELGRLLGTEFQVMF 219
+G+L G + W H + RLL + +F
Sbjct: 358 HIGFLEGLLPWQHWYMSRLLHQYAKAIF 385
>gi|4505835 polycystin 2 [Homo sapiens]
Length = 968
Score = 30.4 bits (67), Expect = 4.2
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 297 TRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHN 356
T R LKS+LR LV + +L + ++ + SN+ ++T M Q+ + P S
Sbjct: 211 TNREKYLKSVLRELVT---YLLFLIVLCILTYGMMSSNVYYYTRMMSQL-FLDTPVSKTE 266
Query: 357 STEFLIYERGVEVGCWGFCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGL 410
T F + W F S+ LY Q + + F LL G+
Sbjct: 267 KTNFKTLSSMEDF--WKFTEGSLLDGLYWKMQPSNQTEADNRSFIFYENLLLGV 318
>gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens]
Length = 192
Score = 30.0 bits (66), Expect = 5.5
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 20/100 (20%)
Query: 326 IGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEFLIYER-------GVEVGCWGFCINS 378
+ W + LF G IV G SA EF IY R GV VG F
Sbjct: 25 VSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 84
Query: 379 VFSSLYSYF---------QKVLVSYIGLKG----LYFTGY 405
++ +L YF +K ++S IG+ L+F G+
Sbjct: 85 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGF 124
>gi|6912736 transient receptor potential cation channel, subfamily
C, member 5 [Homo sapiens]
Length = 973
Score = 29.3 bits (64), Expect = 9.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 377 NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFP----NVYSTLVLCSLFG 432
N+ FS+L+ Q + S GL LY T T F+G NV S +VL ++
Sbjct: 562 NNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYNVISLVVLLNMLI 621
Query: 433 VMSSTLY 439
M + Y
Sbjct: 622 AMMNNSY 628
>gi|209863032 transient receptor potential cation channel, subfamily
C, member 4 isoform zeta [Homo sapiens]
Length = 804
Score = 29.3 bits (64), Expect = 9.3
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
+ YE + C G N+ FS+L+ Q + S GL LY T T F+G
Sbjct: 365 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 424
Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
NV S +VL ++ M + Y
Sbjct: 425 ATMFGTYNVISLVVLLNMLIAMMNNSY 451
>gi|209863030 transient receptor potential cation channel, subfamily
C, member 4 isoform delta [Homo sapiens]
Length = 836
Score = 29.3 bits (64), Expect = 9.3
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
+ YE + C G N+ FS+L+ Q + S GL LY T T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597
Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
NV S +VL ++ M + Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624
>gi|209863028 transient receptor potential cation channel, subfamily
C, member 4 isoform gamma [Homo sapiens]
Length = 828
Score = 29.3 bits (64), Expect = 9.3
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
+ YE + C G N+ FS+L+ Q + S GL LY T T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597
Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
NV S +VL ++ M + Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624
>gi|209863026 transient receptor potential cation channel, subfamily
C, member 4 isoform beta [Homo sapiens]
Length = 893
Score = 29.3 bits (64), Expect = 9.3
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
+ YE + C G N+ FS+L+ Q + S GL LY T T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597
Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
NV S +VL ++ M + Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624
>gi|209863024 transient receptor potential cation channel, subfamily
C, member 4 isoform epsilon [Homo sapiens]
Length = 982
Score = 29.3 bits (64), Expect = 9.3
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
+ YE + C G N+ FS+L+ Q + S GL LY T T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597
Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
NV S +VL ++ M + Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624
>gi|7706747 transient receptor potential cation channel, subfamily
C, member 4 isoform alpha [Homo sapiens]
Length = 977
Score = 29.3 bits (64), Expect = 9.3
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 360 FLIYERGVEVGCWGFCI---NSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIG 416
+ YE + C G N+ FS+L+ Q + S GL LY T T F+G
Sbjct: 538 YFYYEETKGLTCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVG 597
Query: 417 LFP----NVYSTLVLCSLFGVMSSTLY 439
NV S +VL ++ M + Y
Sbjct: 598 ATMFGTYNVISLVVLLNMLIAMMNNSY 624
>gi|40786408 SFT2 domain containing 2 [Homo sapiens]
Length = 160
Score = 29.3 bits (64), Expect = 9.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 178 KGLHYHALFTGFG-----GALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTV 232
KGLH A+F FG G+ +L+G + +L R+ F+ + +++ LCF +
Sbjct: 60 KGLHLFAVFYTFGNIASIGSTIFLMGPVK----QLKRM----FEPTRLIATIMVLLCFAL 111
Query: 233 HLCS 236
LCS
Sbjct: 112 TLCS 115
>gi|94721311 hippocampus abundant transcript-like 1 [Homo sapiens]
Length = 506
Score = 29.3 bits (64), Expect = 9.3
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 408 FGLGTGFIGLFPNVYSTLVLCSLFGVMS-STLYTVPFNLITEYHREEEKERQQAPGGDPD 466
F LGT F FP + F ++S S +++V F++I Y + +E +++
Sbjct: 112 FLLGTVFFTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADVTQEHERSTA---- 167
Query: 467 NSVRGKGMDCATLTCMVQLAQILVGGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFV 526
G AT A ++ +G ++ + +VV+ A+ VAL+ CF+ + V
Sbjct: 168 -----YGWVSATFA-----ASLVSSPAIGAYLSASYGDSLVVLVATVVALLDICFILVAV 217
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,317,226
Number of Sequences: 37866
Number of extensions: 911633
Number of successful extensions: 3095
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3077
Number of HSP's gapped (non-prelim): 21
length of query: 530
length of database: 18,247,518
effective HSP length: 107
effective length of query: 423
effective length of database: 14,195,856
effective search space: 6004847088
effective search space used: 6004847088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.