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Search of human proteins with 61175239
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61175239 transcription elongation factor A (SII)-like 5
[Homo sapiens]
(206 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo... 427 e-120
gi|55749431 transcription elongation factor A (SII)-like 3 [Homo... 376 e-105
gi|14249718 transcription elongation factor A (SII)-like 3 [Homo... 376 e-105
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom... 323 5e-89
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo... 185 2e-47
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo... 184 4e-47
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo... 184 4e-47
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo... 184 4e-47
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo... 184 4e-47
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 65 4e-11
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 64 9e-11
gi|21361639 DIPB protein [Homo sapiens] 59 2e-09
gi|55956788 nucleolin [Homo sapiens] 58 6e-09
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 56 2e-08
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 56 2e-08
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 56 2e-08
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 56 2e-08
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 55 4e-08
gi|55749466 transcription elongation factor A (SII)-like 8 [Homo... 54 9e-08
gi|23503247 transcription elongation factor A (SII)-like 8 [Homo... 54 9e-08
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 53 2e-07
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo... 52 5e-07
gi|169218106 PREDICTED: hypothetical protein, partial [Homo sapi... 51 6e-07
gi|239747174 PREDICTED: hypothetical protein XP_002343931, parti... 51 6e-07
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 51 6e-07
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 51 6e-07
gi|115529449 upstream binding transcription factor, RNA polymera... 50 1e-06
gi|115529451 upstream binding transcription factor, RNA polymera... 50 1e-06
gi|7657671 upstream binding transcription factor, RNA polymerase... 50 1e-06
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 49 2e-06
>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
sapiens]
Length = 206
Score = 427 bits (1099), Expect = e-120
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP
Sbjct: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
Query: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 120
GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT
Sbjct: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 120
Query: 121 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 180
DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA
Sbjct: 121 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 180
Query: 181 PRGQRGVRGVRGGGRGQKDLEDVPYV 206
PRGQRGVRGVRGGGRGQKDLEDVPYV
Sbjct: 181 PRGQRGVRGVRGGGRGQKDLEDVPYV 206
>gi|55749431 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 376 bits (966), Expect = e-105
Identities = 182/206 (88%), Positives = 191/206 (92%), Gaps = 6/206 (2%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
MEK Y +NEG NLE+EGKPEDE +DEGKSDEEEKPD+EGKTECEGKREDEGEP
Sbjct: 1 MEKPYNKNEG------NLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGKREDEGEP 54
Query: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 120
GDEGQLEDEG+QEKQG+SEGE KPQ EGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT
Sbjct: 55 GDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 114
Query: 121 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 180
DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA
Sbjct: 115 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 174
Query: 181 PRGQRGVRGVRGGGRGQKDLEDVPYV 206
PRGQRGVRGVRGGGRGQ+ L D+PY+
Sbjct: 175 PRGQRGVRGVRGGGRGQRGLHDIPYL 200
>gi|14249718 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 376 bits (966), Expect = e-105
Identities = 182/206 (88%), Positives = 191/206 (92%), Gaps = 6/206 (2%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
MEK Y +NEG NLE+EGKPEDE +DEGKSDEEEKPD+EGKTECEGKREDEGEP
Sbjct: 1 MEKPYNKNEG------NLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGKREDEGEP 54
Query: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 120
GDEGQLEDEG+QEKQG+SEGE KPQ EGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT
Sbjct: 55 GDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 114
Query: 121 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 180
DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA
Sbjct: 115 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 174
Query: 181 PRGQRGVRGVRGGGRGQKDLEDVPYV 206
PRGQRGVRGVRGGGRGQ+ L D+PY+
Sbjct: 175 PRGQRGVRGVRGGGRGQRGLHDIPYL 200
>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
sapiens]
Length = 183
Score = 323 bits (829), Expect = 5e-89
Identities = 161/189 (85%), Positives = 168/189 (88%), Gaps = 7/189 (3%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
MEK Y +NEG NLE+EGKPEDE +DEGKSDEEEKPD EGKTECEGKR+ EGEP
Sbjct: 1 MEKPYNKNEG------NLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEP 54
Query: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 120
GDEGQLED+G+QEKQGKSEGE KPQ EGKPASQAKPE QPRAAEKRPA DYVPRKAKRKT
Sbjct: 55 GDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKT 114
Query: 121 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 180
DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA
Sbjct: 115 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 174
Query: 181 PRGQRGVRG 189
+G GV G
Sbjct: 175 -QGDNGVSG 182
>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
sapiens]
Length = 227
Score = 185 bits (470), Expect = 2e-47
Identities = 103/229 (44%), Positives = 147/229 (64%), Gaps = 25/229 (10%)
Query: 1 MEKLYKENEGKPENERNLESE------GKPE-----------DEGSTEDEGKSDEE---- 39
MEKL+ ENEG P N+ +++E GKPE +EG+TE+ GK EE
Sbjct: 1 MEKLFNENEGMPSNQGKIDNEEQPPHEGKPEVACILEDKKLENEGNTENTGKRVEEPLKD 60
Query: 40 -EKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPES 98
EKP+ GK + EGK E +G+ +G + EG E+ G++EGE +P SE +P S+ +PES
Sbjct: 61 KEKPESAGKAKGEGKSERKGKSEMQGGSKTEGKPERGGRAEGEGEPDSEREPESEGEPES 120
Query: 99 QPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEE 158
+ RAA KRPAED +PRKAKRKT++G K +E + + + S+E+M+RE +++R +++
Sbjct: 121 ETRAAGKRPAEDDIPRKAKRKTNKGLAQYLKQYKEAIHDMNFSNEDMIREFDNMARVEDK 180
Query: 159 LRK-KQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV 206
RK KQK+G F WMQR++QDPF PRG R RG G ++D ED+PYV
Sbjct: 181 RRKSKQKLGAFLWMQRNLQDPFYPRGPREFRG--GCRAPRRDTEDIPYV 227
>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 184 bits (468), Expect = 4e-47
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 13/217 (5%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTE-----DEGKSDEEEKPDMEGKTECEGKRE 55
MEKLY ENEG N+ +E+E +P+DE E ++ K + E K + +GKT E +
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 56 DEGEPGDEGQLED-----EGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAED 110
D+G+P EG+ ++ EG E +G SE E KP+ EGKP S+ +P S+ RAA KRPAED
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 111 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 169
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 170 WMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV 206
WMQR++QDPF PRG R RG G ++D+ED+PYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRG--GCRAPRRDIEDIPYV 215
>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 184 bits (468), Expect = 4e-47
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 13/217 (5%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTE-----DEGKSDEEEKPDMEGKTECEGKRE 55
MEKLY ENEG N+ +E+E +P+DE E ++ K + E K + +GKT E +
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 56 DEGEPGDEGQLED-----EGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAED 110
D+G+P EG+ ++ EG E +G SE E KP+ EGKP S+ +P S+ RAA KRPAED
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 111 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 169
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 170 WMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV 206
WMQR++QDPF PRG R RG G ++D+ED+PYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRG--GCRAPRRDIEDIPYV 215
>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 184 bits (468), Expect = 4e-47
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 13/217 (5%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTE-----DEGKSDEEEKPDMEGKTECEGKRE 55
MEKLY ENEG N+ +E+E +P+DE E ++ K + E K + +GKT E +
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 56 DEGEPGDEGQLED-----EGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAED 110
D+G+P EG+ ++ EG E +G SE E KP+ EGKP S+ +P S+ RAA KRPAED
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 111 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 169
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 170 WMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV 206
WMQR++QDPF PRG R RG G ++D+ED+PYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRG--GCRAPRRDIEDIPYV 215
>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 184 bits (468), Expect = 4e-47
Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 13/217 (5%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTE-----DEGKSDEEEKPDMEGKTECEGKRE 55
MEKLY ENEG N+ +E+E +P+DE E ++ K + E K + +GKT E +
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 56 DEGEPGDEGQLED-----EGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAED 110
D+G+P EG+ ++ EG E +G SE E KP+ EGKP S+ +P S+ RAA KRPAED
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 111 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 169
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 170 WMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLEDVPYV 206
WMQR++QDPF PRG R RG G ++D+ED+PYV
Sbjct: 181 WMQRNLQDPFYPRGPREFRG--GCRAPRRDIEDIPYV 215
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 65.1 bits (157), Expect = 4e-11
Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 6 KENEGKPENERNLESEGK-PEDEGSTEDEGKSDE----EEKPDMEGKTECEGKREDEGEP 60
KEN G E+ ES G+ P +EG T EG+++E E +P+ EG+TE +GK E+
Sbjct: 738 KENPGGQEDVAEAESTGEMPGEEGETAGEGETEEKSGGETQPEGEGETETQGKGEE---- 793
Query: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRK- 119
EDE E +G +EGED+ + + E + + E AE++ K K
Sbjct: 794 -----CEDENEAEGKGDNEGEDEGEIHAEDGEMKGNEGETESQE-LSAENHGEAKNDEKG 847
Query: 120 -TDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKK 162
D G D +E+ +E EE E + +EE +K
Sbjct: 848 VEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEK 891
Score = 54.7 bits (130), Expect = 5e-08
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDE-------EEKPDMEGKTECEGKREDEGE 59
E G+ E E E +PE EG TE +GK +E E K D EG+ E E ED
Sbjct: 762 ETAGEGETEEKSGGETQPEGEGETETQGKGEECEDENEAEGKGDNEGEDEGEIHAEDGEM 821
Query: 60 PGDEGQLE-DEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKR 118
G+EG+ E E + E G+++ ++K +G + E + E++ E+ + +
Sbjct: 822 KGNEGETESQELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEE-EEEEQEE 880
Query: 119 KTDRGTDDSPKDSQEDL 135
+ + ++ K ++E L
Sbjct: 881 EEEEEEEEEEKGNEEPL 897
Score = 45.8 bits (107), Expect = 3e-05
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 3 KLYKENEGKPENER-----NLESEGKPEDEGSTE-----------DEGKSDEEEKPDMEG 46
+L KE E + N+ ++E KPE+E + + K D++E P G
Sbjct: 686 RLAKEKEEESLNQGARAQPQAKAESKPEEEEPAKLPAVTVTPAPVPDIKGDQKENP---G 742
Query: 47 KTECEGKREDEGE-PGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEK 105
E + E GE PG+EG+ EG E+ KS GE +P+ EG+ +Q K E ++
Sbjct: 743 GQEDVAEAESTGEMPGEEGETAGEGETEE--KSGGETQPEGEGETETQGKGE---ECEDE 797
Query: 106 RPAEDYVPRKAKRKTD-RGTDDSPKDSQEDLQERHLSSE 143
AE + + + + D K ++ + + + LS+E
Sbjct: 798 NEAEGKGDNEGEDEGEIHAEDGEMKGNEGETESQELSAE 836
Score = 45.1 bits (105), Expect = 4e-05
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTED---------EGKSDEEEKPDMEGKTECEGKREDE 57
+NEG+ E E + E +EG TE E K+DE+ D G + + E+E
Sbjct: 805 DNEGEDEGEIHAEDGEMKGNEGETESQELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEE 864
Query: 58 GEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAA 103
E E + E+E QE++ + E E++ + +P S PE++ + A
Sbjct: 865 EEEEQEEE-EEEEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQA 909
Score = 40.4 bits (93), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPG 61
++L EN G+ +N+ +G D G +E+E + +EE++ E E + E E E
Sbjct: 831 QELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEEEEEEQE-------EEEEEEEQEEEEE 883
Query: 62 DEGQLEDEGNQE 73
+E + E++GN+E
Sbjct: 884 EEEEEEEKGNEE 895
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 63.9 bits (154), Expect = 9e-11
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 29/208 (13%)
Query: 6 KENEGKPENERNLESEGKPED---EGSTEDEGKSDEEEKPDMEGKTECEGK--------R 54
+E EG+ E E E EG+ ED EG E+ EEE+ + EG+ E EG+
Sbjct: 926 EEGEGEGEEE---EGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGE 982
Query: 55 EDEGE-PGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVP 113
E+EGE G+E + E+EG +E +G+ EGE + + E + + + E + E E
Sbjct: 983 EEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEE 1042
Query: 114 RKAKRKTDRGTDDSPKDSQEDLQE---RHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 170
+ + K G ++ +E+ +E + EE R+ G+ + +++ K G
Sbjct: 1043 GEEREKEGEGEENRRNREEEEEEEGKYQETGEEENERQDGEEYKKVSKIKGSVKYGKHKT 1102
Query: 171 MQRDVQDPFAPRGQRGVRGVRGGGRGQK 198
Q+ + V +G G+ Q+
Sbjct: 1103 YQK-----------KSVTNTQGNGKEQR 1119
Score = 60.8 bits (146), Expect = 8e-10
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEE-KPDMEGKTECEGKREDEGEP 60
E+ KE E + ERN E E EG E+ G+ +EEE + E + E EGK E EGE
Sbjct: 709 EQEQKEREQGHQKERNQEME-----EGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEE 763
Query: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPA---------EDY 111
+ + ++EG ++K+ ++ E+K + EG + E++ R EK E
Sbjct: 764 VEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGK 823
Query: 112 VPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEE 158
R+ + + G ++ + +E+ + E E G+ +EE
Sbjct: 824 GEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEE 870
Score = 60.8 bits (146), Expect = 8e-10
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 9 EGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECE-GKREDEGEPGD-EGQL 66
EGK E E E E+EG E+E EEE+ + +G+ E E G+ E+EGE G+ EG+
Sbjct: 821 EGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEE 880
Query: 67 ED-EGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGT- 124
E+ EG E++G+ EGE++ + EG+ + + E + E + E+ + + + + G
Sbjct: 881 EEGEGEGEEEGEGEGEEE-EGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEG 939
Query: 125 --DDSPKDSQEDLQERHLSSEE 144
+D + +E+ E EE
Sbjct: 940 EGEDGEGEGEEEEGEWEGEEEE 961
Score = 58.5 bits (140), Expect = 4e-09
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 7 ENEGKPENERNLESEGKPEDEG-----STEDEGKSDEE-EKPDMEGKTECEGKREDEGEP 60
E EG+ E E E EG+ E+EG E EGK +EE E+ + EG+ E EG E EGE
Sbjct: 888 EEEGEGEGEEE-EGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEE-EG--EGEGED 943
Query: 61 GDEGQLEDEG---NQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAK 117
G+ E+EG +E++G+ EGE++ + EG+ + + E + E E + +
Sbjct: 944 GEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGE-EGEGEGEEEEGEGEGEEEEGEEEGEEE 1002
Query: 118 RKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG 166
+ + + ++ +E E + EE E G+ +EE +++K G
Sbjct: 1003 GEGEEEGEGEGEEEEEGEVEGEVEGEEGEGE-GEEEEGEEEGEEREKEG 1050
Score = 56.6 bits (135), Expect = 1e-08
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 17/203 (8%)
Query: 6 KENEGKPENERNLESEGKPEDEGST---EDEGKSDEEEKPDMEGKTECEGKREDEGEPGD 62
+E EG+ E E E EGK E+EG E+EG+ E E + EG E EG+ E EGE G+
Sbjct: 843 EEEEGEGEEE---EGEGKGEEEGEEGEGEEEGEEGEGEGEEEEG--EGEGEEEGEGE-GE 896
Query: 63 EGQLEDEGNQEKQGKSE---GEDKPQSEGKPASQAKPESQPRAAEKRPAE---DYVPRKA 116
E + E EG +E +G+ E GE K + EG+ + + E + E E + +
Sbjct: 897 EEEGEGEGEEEGEGEGEEEEGEGKGEEEGE-EGEGEGEEEEGEGEGEDGEGEGEEEEGEW 955
Query: 117 KRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQ 176
+ + + G + ++ + + +E EE E G+ + E +++ G + + +
Sbjct: 956 EGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGE-GEGEEEEGEEEGEEEGEGEEEGEGEGE 1014
Query: 177 DPFAPRGQRGVRGVRGGGRGQKD 199
+ + V G G G G+++
Sbjct: 1015 EEEEGEVEGEVEGEEGEGEGEEE 1037
Score = 56.6 bits (135), Expect = 1e-08
Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 16/153 (10%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECE-----GKREDEGEP 60
+E EG+ E E E EG+ E EG E EG+ +EEE+ ++EG+ E E G+ E+ E
Sbjct: 984 EEGEGEGEEEEG-EEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEE 1042
Query: 61 GDEGQLEDEG-----NQEKQGKSEGEDKPQSEGKPASQAKP-ESQPRAAEKRPAEDYVPR 114
G+E + E EG N+E++ + EG K Q G+ ++ + E + ++ + + Y
Sbjct: 1043 GEEREKEGEGEENRRNREEEEEEEG--KYQETGEEENERQDGEEYKKVSKIKGSVKYGKH 1100
Query: 115 KAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMR 147
K +K + ++ + +E + + S+ +++
Sbjct: 1101 KTYQK--KSVTNTQGNGKEQRSKMPVQSKRLLK 1131
Score = 46.2 bits (108), Expect = 2e-05
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 7/161 (4%)
Query: 13 ENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQ 72
E E+ + +G+ E E E E + E+E+ E E K ++G + Q +EG +
Sbjct: 673 EREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGE 732
Query: 73 EKQGKSEGED-KPQSEGKPASQAKPESQPRAAE-KRPAEDYVPRKAKR--KTDRGTD--D 126
E+ G+ E E+ + E + + K E + E +R E+ +K +R K ++G + D
Sbjct: 733 EEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGD 792
Query: 127 SPKDSQEDLQERHLSSEEMMR-ECGDVSRAQEELRKKQKMG 166
+ +E+ + R EE E G+V + E ++++ G
Sbjct: 793 QGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEG 833
Score = 43.1 bits (100), Expect = 2e-04
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 14/201 (6%)
Query: 7 ENEGKPENERNLESEGKPED----EGSTEDEGKSDEEEKPDMEGKTECEGK-REDEGEPG 61
E G+ E E + E K D E ++G E + EG E G+ E+EG+
Sbjct: 687 ERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDRE 746
Query: 62 DEGQLEDEGNQEKQGKS-EGE-DKPQSEGKPASQA-KPESQPRAAEKRPAEDYVPRKAKR 118
+E + E EG +E +G+ EGE +K + E K +A K E ++ E+
Sbjct: 747 EEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGE 806
Query: 119 KTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDP 178
+ + G + + +E ER EE E + +EE +++ G +
Sbjct: 807 EKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEG------EGKGEE 860
Query: 179 FAPRGQRGVRGVRGGGRGQKD 199
G+ G G G G+++
Sbjct: 861 EGEEGEGEEEGEEGEGEGEEE 881
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 37/231 (16%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKRED---------- 56
E + NE N++ G +++ + +D+ E EGK + G+ ED
Sbjct: 602 EEQEVEANEENVKVHGGRKEKTEILSDDLTDKAEVS--EGKAKSVGEAEDGPEGRGDGTC 659
Query: 57 -EGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPR---AAEKRPAEDYV 112
EG G E ++E + ++ K GE + EG+ K E + R E++ E
Sbjct: 660 EEGSSGAEHWQDEEREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGH 719
Query: 113 PRKAKRKTDRGTDDSPKDSQEDLQERHLSSE--------------EMMRECGDVSRAQEE 158
++ ++ + G ++ + +E+ +R E E RE + R +EE
Sbjct: 720 QKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEE 779
Query: 159 LRKKQKMGGFHWMQRD-VQDPFAPRGQRGVRG--VRGG----GRGQKDLED 202
K++ G Q + ++ RG+ G V GG G+G+++ E+
Sbjct: 780 RAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEE 830
Score = 29.6 bits (65), Expect = 1.9
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 2 EKLYKENEGKPENERNLESE----GKPEDEGSTEDEGKSDEEEK 41
E+ KE EG+ EN RN E E GK ++ G E+E + EE K
Sbjct: 1044 EEREKEGEGE-ENRRNREEEEEEEGKYQETGEEENERQDGEEYK 1086
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 59.3 bits (142), Expect = 2e-09
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQL 66
E GK E E +E E + E E E E + + E + + E + E E + ++E E E ++
Sbjct: 74 EGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEM 133
Query: 67 EDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRK-TDRGTD 125
EDE QE + + + +++ +SE + ++A+ E P E R AKRK D G D
Sbjct: 134 EDE--QESEAEEDNQEEGESEAEGETEAESEFDPE------IEMEAERVAKRKCPDHGLD 185
Query: 126 DSPKDSQEDLQ----ERHLSSEEMMRECGDVSRAQEELRKKQKMG 166
S QED Q + + + A EELR K G
Sbjct: 186 LSTY-CQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGG 229
Score = 50.1 bits (118), Expect = 1e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E+E + E+E ESE + E E +++E + D EE+ + E ++E E ++EGE EG+
Sbjct: 97 EESESEEESESEEESETEEESEDESDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGE 156
Query: 66 LEDEGNQEKQGKSEGE 81
E E + + + E E
Sbjct: 157 TEAESEFDPEIEMEAE 172
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 36 SDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKS--EGEDKPQSEGKPASQ 93
+D E E + + E +RE E E G+E + E+E E++ ++ E ED+ E + S+
Sbjct: 71 ADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSE 130
Query: 94 AKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQE 133
+ E + + + ++ +A+ +T+ ++ P+ E
Sbjct: 131 EEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEME 170
Score = 33.1 bits (74), Expect = 0.17
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECE 51
E+ +++E + E+E+ E+E ++EG +E EG+++ E + D E + E E
Sbjct: 123 EESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAE 172
Score = 29.6 bits (65), Expect = 1.9
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 70 GNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT-DRGTDDSP 128
G+Q ++GE + E + + + E + A E+ +E+ + + +T + D+S
Sbjct: 63 GSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESD 122
Query: 129 KDSQEDLQERHLSSEEMMRECGDVSRAQEE 158
++S+ED +E +E E + + E
Sbjct: 123 EESEEDSEEEMEDEQESEAEEDNQEEGESE 152
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 57.8 bits (138), Expect = 6e-09
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 5/153 (3%)
Query: 11 KPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEG 70
K E+ E + EDE EDE + ++E +P EDE + DE +D+
Sbjct: 141 KKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDD 200
Query: 71 NQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKD 130
++E + E + ++GK A++ P AE ED D DD D
Sbjct: 201 DEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAED---EDEEEDDEDEDDDDDEDDEDDD 257
Query: 131 SQEDLQERHLSSEEMMRECGDVSRAQEELRKKQ 163
++D +E EE ++E + ++E+ K++
Sbjct: 258 DEDDEEEEEEEEEEPVKEA--PGKRKKEMAKQK 288
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 13 ENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGK-------TECEGKREDEGEPGDEGQ 65
E+E + + E +D+ ED+ + + E +GK + + EDE E D+
Sbjct: 185 EDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDD-- 242
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQ-PRAAEKRPAEDYVPRKAKRKTDRGT 124
EDE + + + + +D+ E + + +P + P +K A+ +AK++ GT
Sbjct: 243 -EDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGT 301
Query: 125 D 125
+
Sbjct: 302 E 302
Score = 34.7 bits (78), Expect = 0.059
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 18/146 (12%)
Query: 6 KENEGKPENERNLESEGKP--------------EDEGSTEDEGKSDEEEKPDMEGK---- 47
+E+E E+E E E +P ED+ ED+ D++E+ D E +
Sbjct: 154 EEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMET 213
Query: 48 TECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRP 107
T +GK+ + P + ++ ++E+ + E +D + + + E + E+
Sbjct: 214 TPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPV 273
Query: 108 AEDYVPRKAKRKTDRGTDDSPKDSQE 133
E RK + + ++ K E
Sbjct: 274 KEAPGKRKKEMAKQKAAPEAKKQKVE 299
Score = 33.5 bits (75), Expect = 0.13
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 12 PENERNL-ESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEG 70
P +N+ E E + ED+ EDE D+E+ D + + + E + E+E EP E + +
Sbjct: 226 PVKAKNVAEDEDEEEDD---EDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKK 282
Query: 71 NQEKQGKSEGEDKPQSEGKPASQA 94
KQ + K + EG + A
Sbjct: 283 EMAKQKAAPEAKKQKVEGTEPTTA 306
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 56.2 bits (134), Expect = 2e-08
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E E +PE E E K +T E K +E EK + EG+ E E EDEG D+ +
Sbjct: 493 EEKEEEPEAEEE-EVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEE--EEDEGAKSDQAE 549
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAE 109
EG EK+G SE E+ Q EG+ ++A+ E EK+ E
Sbjct: 550 ---EGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEE 590
Score = 50.8 bits (120), Expect = 8e-07
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
KE EG+ E E E E + EDEG+ D+ + EK EG +E E ++EGE E +
Sbjct: 521 KEEEGEKEEEEGQEEE-EEEDEGAKSDQAEEGGSEK---EGSSEKEEGEQEEGETEAEAE 576
Query: 66 LED-EGNQEKQGKSEGEDKPQSEG--KPASQAKPESQPRAAEKRPAED--YVPRKAKRKT 120
E+ E +EK+ + + E+ E A KPE K P E+ P
Sbjct: 577 GEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVE 636
Query: 121 DRGTDDSPKDSQED 134
++G PK E+
Sbjct: 637 EKGKSPVPKSPVEE 650
Score = 36.2 bits (82), Expect = 0.020
Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 7 ENEGK-PENERNLESEGK-PEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEG 64
E +GK P + +E +GK P + E++ KS + P E K++ E + ++ E
Sbjct: 649 EEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKE----- 703
Query: 65 QLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGT 124
E+E ++ K E +K + + K + K P E + + K ++ T
Sbjct: 704 --EEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKET 761
Query: 125 DDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGG 167
+ K Q++ ++ E E G A+ ++ + G
Sbjct: 762 KEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNG 804
Score = 35.8 bits (81), Expect = 0.026
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 15 ERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGD-------EGQLE 67
E+ + EGKP + E+EK EG +E EG D+G G G++E
Sbjct: 758 EKETKEEGKPLQQ--------EKEKEKAGGEGGSEEEG--SDKGAKGSRKEDIAVNGEVE 807
Query: 68 DEGNQEKQGKSEGEDKPQSEGKPAS--QAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
+ E++ K +G + + +G + P + + +K + V + ++ T G D
Sbjct: 808 GKEEVEQETKEKGSGREEEKGVVTNGLDLSPADEKKGGDKSEEKVVVTKTVEKITSEGGD 867
Query: 126 DSPK 129
+ K
Sbjct: 868 GATK 871
Score = 28.1 bits (61), Expect = 5.5
Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 62 DEGQLEDEGNQ---------EKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYV 112
+E ++EDE ++ E+ S E+K ++ + + + E + AA+K P +
Sbjct: 458 EETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATA 517
Query: 113 PRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGG 167
P + K + G + + +E+ +E + + E G E + ++ G
Sbjct: 518 P---EVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEG 569
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 56.2 bits (134), Expect = 2e-08
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E E +PE E E K +T E K +E EK + EG+ E E EDEG D+ +
Sbjct: 117 EEKEEEPEAEEE-EVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEE--EEDEGAKSDQAE 173
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAE 109
EG EK+G SE E+ Q EG+ ++A+ E EK+ E
Sbjct: 174 ---EGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEE 214
Score = 50.8 bits (120), Expect = 8e-07
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
KE EG+ E E E E + EDEG+ D+ + EK EG +E E ++EGE E +
Sbjct: 145 KEEEGEKEEEEGQEEE-EEEDEGAKSDQAEEGGSEK---EGSSEKEEGEQEEGETEAEAE 200
Query: 66 LED-EGNQEKQGKSEGEDKPQSEG--KPASQAKPESQPRAAEKRPAED--YVPRKAKRKT 120
E+ E +EK+ + + E+ E A KPE K P E+ P
Sbjct: 201 GEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVE 260
Query: 121 DRGTDDSPKDSQED 134
++G PK E+
Sbjct: 261 EKGKSPVPKSPVEE 274
Score = 36.2 bits (82), Expect = 0.020
Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 9/163 (5%)
Query: 7 ENEGK-PENERNLESEGK-PEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEG 64
E +GK P + +E +GK P + E++ KS + P E K++ E + ++ E
Sbjct: 273 EEKGKSPVPKSPVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKE----- 327
Query: 65 QLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGT 124
E+E ++ K E +K + + K + K P E + + K ++ T
Sbjct: 328 --EEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKET 385
Query: 125 DDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGG 167
+ K Q++ ++ E E G A+ ++ + G
Sbjct: 386 KEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSRKEDIAVNG 428
Score = 35.8 bits (81), Expect = 0.026
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 15 ERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGD-------EGQLE 67
E+ + EGKP + E+EK EG +E EG D+G G G++E
Sbjct: 382 EKETKEEGKPLQQ--------EKEKEKAGGEGGSEEEG--SDKGAKGSRKEDIAVNGEVE 431
Query: 68 DEGNQEKQGKSEGEDKPQSEGKPAS--QAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
+ E++ K +G + + +G + P + + +K + V + ++ T G D
Sbjct: 432 GKEEVEQETKEKGSGREEEKGVVTNGLDLSPADEKKGGDKSEEKVVVTKTVEKITSEGGD 491
Query: 126 DSPK 129
+ K
Sbjct: 492 GATK 495
Score = 28.1 bits (61), Expect = 5.5
Identities = 22/115 (19%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 62 DEGQLEDEGNQ---------EKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYV 112
+E ++EDE ++ E+ S E+K ++ + + + E + AA+K P +
Sbjct: 82 EETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATA 141
Query: 113 PRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGG 167
P + K + G + + +E+ +E + + E G E + ++ G
Sbjct: 142 P---EVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEG 193
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 56.2 bits (134), Expect = 2e-08
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 7 ENEGKPENE--RNLESEGK--PEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGD 62
E E +PE E LE+EG+ PE EG+ E + EE + EG+T+ E + + E +
Sbjct: 1912 EKEAQPETESVEALETEGEDEPESEGA---EAQEAEEAAQEAEGQTQPESEVIESQEAEE 1968
Query: 63 EGQLEDEGNQEKQ-----GKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAK 117
E Q E E + + ++EGE +P+SE A +A+ E Q E +P D V + K
Sbjct: 1969 EAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPK 2028
Query: 118 ------RKTDRGTDDSPKDSQ--EDLQERHLSSEEMMRECGDVSRAQEE 158
++ + T + D+Q D E + EE G+V A+ E
Sbjct: 2029 SEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGE 2077
Score = 55.5 bits (132), Expect = 3e-08
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 13 ENERNLESEG--KPEDEGSTEDEGKSDEEEKPDMEGKTECEG----KREDEGEPGDEG-- 64
E E ESEG PE EG + E + E + + E + E EG + E+E +P EG
Sbjct: 2122 EGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVE 2181
Query: 65 --QLEDEGNQEKQG----KSEGEDKPQSEGKPASQAKPESQ--PRAAEKRPAEDYVPRKA 116
+ E E E +G ++EGE +P+ EG A +A+ E+Q P E AE ++
Sbjct: 2182 APEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPES 2241
Query: 117 KRKTDRGTDDSPKDSQEDLQERHLS 141
+ +T SP+ S D Q S
Sbjct: 2242 EGETQGEKKGSPQVSLGDGQSEEAS 2266
Score = 55.5 bits (132), Expect = 3e-08
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 7 ENEGKPENE----RNLESEGKPEDEGSTEDEGKSDEEEKPDMEG--KTECEGKREDEGEP 60
E E +PE+E ++ E E +PE EG E ++EE +P++EG E EG+ + E E
Sbjct: 2138 EGEAQPESEGVEAQDAEGEAQPESEGIEAQE--AEEEAQPELEGVEAPEAEGEAQPESEG 2195
Query: 61 GDEGQLEDEGNQEKQG----KSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKA 116
+ + E E E +G ++E E +P+ EG +A+ E+QP + + E +K
Sbjct: 2196 IEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGE----KKG 2251
Query: 117 KRKTDRGTDDSPKDSQ 132
+ G S + S+
Sbjct: 2252 SPQVSLGDGQSEEASE 2267
Score = 55.1 bits (131), Expect = 4e-08
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
Query: 19 ESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKS 78
E E +PE EG E + D +E EG+ + E ED P EG+ + E + ++
Sbjct: 1841 EGEAQPESEGVEAPEAEGDAQEA---EGEAQPES--EDVEAPEAEGEAQPESEDVETPEA 1895
Query: 79 EGEDKPQSEGKPASQAKPESQPRA---------AEKRPAEDYVPRKAKRKTDRGTDDSPK 129
E E +P+SEG A +A+ E+QP E P + + + + + +
Sbjct: 1896 EWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQ 1955
Query: 130 DSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 180
E ++ + + EE E DV + E+ ++ G DV+ P A
Sbjct: 1956 PESEVIESQE-AEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEA 2005
Score = 55.1 bits (131), Expect = 4e-08
Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 27/168 (16%)
Query: 1 MEKLYKENEGKPENE---------RNLESEGKPEDEGSTEDEGKSDEEEKPDMEG----- 46
+E L E E +PE+E E+EG+ + E + +++EE +P+ E
Sbjct: 1922 VEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALE 1981
Query: 47 ----KTECEGKREDEGE----PGDEGQLEDEGNQEKQGKSEG-EDKPQSEGKPASQAKPE 97
E EG+ + E E P EG+++ E +E Q +S+G E +P+SEG+ A + + E
Sbjct: 1982 VEVETQEAEGEAQPESEDVEAPEAEGEMQ-EAEEEAQPESDGVEAQPKSEGEEAQEVEGE 2040
Query: 98 SQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEM 145
+Q + +P D V + + ++ + QE E H SE++
Sbjct: 2041 TQKTEGDAQPESDGVEAP---EAEEEAQEAEGEVQEAEGEAHPESEDV 2085
Score = 54.7 bits (130), Expect = 5e-08
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKR----EDEGEPGD 62
E EG+ + +E+ PE EG + E + E + + E + E EG E E +P
Sbjct: 2105 EAEGEAQKAEGIEA---PETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPES 2161
Query: 63 EG----QLEDEGNQEKQG----KSEGEDKPQSEGKPASQAKPESQP--RAAEKRPAEDYV 112
EG + E+E E +G ++EGE +P+SEG A +A+ E+QP E AE+
Sbjct: 2162 EGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEA 2221
Query: 113 -PRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQE 157
P +T ++ +S+ + Q S ++ G A E
Sbjct: 2222 QPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSEEASE 2267
Score = 52.0 bits (123), Expect = 4e-07
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 11/204 (5%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEE---KPDMEGKTECEGKREDEGEPGDE 63
E E +PE++ +E++ K E E + E EG++ + E +P+ +G E + E + G+
Sbjct: 2013 EEEAQPESD-GVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEV 2071
Query: 64 GQLEDEGNQEKQG----KSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRK 119
+ E E + E + ++EGE +P+SEG A +A+ E+Q + P + +
Sbjct: 2072 QEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEG 2131
Query: 120 TDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPF 179
+ + + + E + E E + + E + ++ G + + +
Sbjct: 2132 IEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGE--- 2188
Query: 180 APRGQRGVRGVRGGGRGQKDLEDV 203
A G+ G Q +LE V
Sbjct: 2189 AQPESEGIEAPEAEGEAQPELEGV 2212
Score = 45.8 bits (107), Expect = 3e-05
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 7 ENEGKPENER----NLESEGKPEDEGSTEDEGKSDEEEKPDMEG----KTECEGKREDEG 58
E E +PE E E E +PE EG E + E +P++EG + E E + E EG
Sbjct: 2170 EEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEG--EAQPELEGVEAPEAEEEAQPEPEG 2227
Query: 59 --EPGDEGQLEDEGNQEKQGKSEGEDKPQ-SEGKPASQAKPESQPRAAEKRPAEDYVPRK 115
P EG+ + E E QG+ +G PQ S G S+ ES E RP P
Sbjct: 2228 VETPEAEGEAQPESEGETQGEKKG--SPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGG 2285
Query: 116 AKRKTDRGTDDSPKDSQ 132
G+ P S+
Sbjct: 2286 DTPHQRPGSQTGPSSSR 2302
Score = 45.4 bits (106), Expect = 3e-05
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEE--------KPDMEGKTECEGK 53
+ + +E EGK N S G E E EG S+ E + +++G+ G
Sbjct: 1766 DAMAQEREGKTHNSET--SAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGD 1823
Query: 54 REDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAE 109
++ G EG E E Q +SEG + P++EG A +A+ E+QP + + E
Sbjct: 1824 QDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEG-DAQEAEGEAQPESEDVEAPE 1878
Score = 41.2 bits (95), Expect = 6e-04
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 37/223 (16%)
Query: 7 ENEGKPENER----NLESEGKPEDEG----STEDEGKSDEE--EKPDMEGKTECEGKRED 56
E E +PE+E E E +PE EG E+E + + E E P+ EG+ + E + E
Sbjct: 2186 EGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGET 2245
Query: 57 EGEPGDEGQLE-DEGNQEKQGKSEG---EDK---PQSEG------KPASQAKPESQPRAA 103
+GE Q+ +G E+ +S ED+ P S G +P SQ P S ++
Sbjct: 2246 QGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSSSRASS 2305
Query: 104 -----EKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEE 158
+K D+V R D + +P ++ + SS E SR E+
Sbjct: 2306 WGNCWQKDSENDHVLGDT-RSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLGSRTPEQ 2364
Query: 159 LRKKQKMGGFHWMQRDVQDPFAPRGQRGVRGVRGGGRGQKDLE 201
+ G+ + AP G R G GQ DL+
Sbjct: 2365 GASE----GYDLQEDQALGSLAPTEAVG----RADGFGQDDLD 2399
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 15/159 (9%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
+E+ + EG+ E ++ E +EG E+ + +E ++ + EG+ E E + E+ E
Sbjct: 1303 LEETKEGTEGEGLQEEAVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEET 1362
Query: 61 GDEG------QLED-----EGNQEKQGKSEG--EDKPQSEGKPASQAKPESQPRAAEKRP 107
G EG QLE+ EG + + EG E+ EG Q E+ +
Sbjct: 1363 GGEGLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQ 1422
Query: 108 AEDYVPRKAKRKTDRGTDDSPKDSQEDLQE--RHLSSEE 144
+D V + + + P + E+ E HLS +
Sbjct: 1423 EDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETD 1461
Score = 30.4 bits (67), Expect = 1.1
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 52 GKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKP------ASQAKPESQPRAAEK 105
G R E +PGD+ LE G + G+ E P + +P +S P+S +
Sbjct: 986 GLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLGSSDTGPQSGEGVPQG 1045
Query: 106 RPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMR 147
E A+ DR + S L R +S ++MR
Sbjct: 1046 AAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMR 1087
Score = 29.6 bits (65), Expect = 1.9
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 16/129 (12%)
Query: 15 ERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEK 74
E L+ EG PE EGS + S E PD GK E +P E + +
Sbjct: 1391 EEGLKEEGLPE-EGSVHGQELS-EASSPD--------GKGSQEDDPVQEEEAGRASASAE 1440
Query: 75 QGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVP--RKAKRKTDRGTDDSPKDSQ 132
+EG ++P +P S E+ P A+E++ P K T G + +
Sbjct: 1441 PCPAEGTEEPT---EPPSHLS-ETDPSASERQSGSQLEPGLEKPPGATMMGQEHTQAQPT 1496
Query: 133 EDLQERHLS 141
+ ER S
Sbjct: 1497 QGAAERSSS 1505
Score = 28.1 bits (61), Expect = 5.5
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQL 66
E+E + ++E S + +T E EE K EG+ E + E +EG L
Sbjct: 1273 EDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEAVQLEETKTEEG-L 1331
Query: 67 EDEGNQ-EKQGKSEGEDKPQSEGK 89
++EG Q E+ ++EGE + + E +
Sbjct: 1332 QEEGVQLEETKETEGEGQQEEEAQ 1355
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 55.8 bits (133), Expect = 2e-08
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEG---KSDEEEKPDMEGKTECEG--KRED 56
EK ++ E +N E + K ++E E++G K D++EK + +GK + G K ED
Sbjct: 110 EKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGED 169
Query: 57 EGEPGDEGQLEDEGNQEKQGKSEGEDKPQSE-------GKPASQAKPESQPR-AAEKRPA 108
E D + ED + GK +GED+ + E GK K + + + +
Sbjct: 170 AKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVK 229
Query: 109 EDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEE 144
ED R+ ++ + G ++ +EDL+E EE
Sbjct: 230 EDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEE 265
Score = 51.6 bits (122), Expect = 5e-07
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 9 EGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGK--REDEGEPGDEGQL 66
E K EN + +G + E + +E++K D E + E +G+ +ED+ E G+E
Sbjct: 99 EVKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEE--- 155
Query: 67 EDEGNQEKQGKSEGED-KPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
+G ++K G +GED K + +GK K + + ++ RK D
Sbjct: 156 --DGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENED 213
Query: 126 DSPKDSQEDLQERHLSSEEMMRECG--DVSRAQEELRKKQK 164
K +++ ++ + +E RE G D +EE K+++
Sbjct: 214 GKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKE 254
Score = 45.8 bits (107), Expect = 3e-05
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 7 ENEGKPENERNLESE-GKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
E +GK + N + E K +++G ++GK + E D + K E E + ED E GD +
Sbjct: 154 EEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGE---DGKEKGEDEKEEEDRKETGDGKE 210
Query: 66 LEDEGNQEKQGKSEGED-------KPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKR 118
ED +EK K EG+D K + +GK E + E E+ + +
Sbjct: 211 NED--GKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEI 268
Query: 119 KTDRGTDDSPK 129
K D G + P+
Sbjct: 269 KEDDGKKEEPQ 279
Score = 44.7 bits (104), Expect = 6e-05
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 19/111 (17%)
Query: 6 KENEGKPENERNLESEGKPED-EGSTEDEGKSDEEEKPDMEGKTECEGKREDEG-EPGD- 62
K K E+ + E K ED +G+ ED + E+EK + + K +GK ++G E GD
Sbjct: 161 KNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDK 220
Query: 63 ----------------EGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPE 97
+G+ ++ GN+E+ GK + + K + EGK + K +
Sbjct: 221 KEGKDVKVKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEIKED 271
Score = 43.1 bits (100), Expect = 2e-04
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
K + K E +R +GK ++G + + K ++ K + K +GK ++ G + G+
Sbjct: 192 KGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGK 251
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGK 89
+++ +E++GK E E K + +GK
Sbjct: 252 EKEDLKEEEEGKEEDEIK-EDDGK 274
Score = 40.4 bits (93), Expect = 0.001
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 1 MEKLYKEN----EGK----PENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEG 52
+E+ Y EN E K P +E+ + + E +TE G +++E E K E E
Sbjct: 72 VEEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGG--EKKEAVAAEVKNEEED 129
Query: 53 KREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYV 112
++EDE E Q E++G + GK + ++K + +GK + + A EK +
Sbjct: 130 QKEDE-----EDQNEEKG---EAGKEDKDEKGEEDGKEDKNGNEKGED-AKEKEDGK--- 177
Query: 113 PRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGG 167
K + +G + K+ ED +E EE +E GD ++ K K G
Sbjct: 178 ----KGEDGKGNGEDGKEKGEDEKE-----EEDRKETGDGKENEDGKEKGDKKEG 223
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 55.1 bits (131), Expect = 4e-08
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 14/155 (9%)
Query: 13 ENERNLES--EGKPEDEGSTEDEGKSDEEEKPDMEGKTECE-GKREDEGEPGDEGQLEDE 69
E ER +E+ EGK E E + E + E+ K + E + + E GK+E +GE E + +
Sbjct: 40 EREREIETRKEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKK 99
Query: 70 GNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPK 129
+EK+ K EGE+K + + K E + R + ++ ++ +++ +R + K
Sbjct: 100 RRREKENK-EGEEKEK-------RKKKEKKERGRTSKEGKERERKEERKREERKERERKK 151
Query: 130 DSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
+ +E +ER E RE V +EE ++K++
Sbjct: 152 EEREKERER---KERKKRERKQVGEKEEERKEKER 183
Score = 50.4 bits (119), Expect = 1e-06
Identities = 34/160 (21%), Positives = 78/160 (48%), Gaps = 3/160 (1%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDE-GKSDEEEKPDMEGKTECEGKREDEGEPGDEG 64
KE E + + ER + K E E + E GK +++ + E + + +RE E + G+E
Sbjct: 53 KERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEK 112
Query: 65 QLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGT 124
+ + ++++G++ E K + + + + + + R E+R E RK ++K +R
Sbjct: 113 EKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKER--ERKERKKRERKQ 170
Query: 125 DDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
++ +++ + + E R+ R ++E R+++K
Sbjct: 171 VGEKEEERKEKERKERKKRERNRKERKKERERKERRERKK 210
Score = 47.0 bits (110), Expect = 1e-05
Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPG 61
EK +E E + + ER GK E +G + E + ++ + + E K E ++ + E
Sbjct: 67 EKRKREREKERKRER-----GKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKK 121
Query: 62 DEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTD 121
+ G+ EG +E++ K E + + + E + + + + + R K+ V K + + +
Sbjct: 122 ERGRTSKEG-KERERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEERKE 180
Query: 122 RGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKK--QKMGGFHWMQRD 174
+ + K + + +ER E R R ++E RKK QK +W +++
Sbjct: 181 KERKER-KKRERNRKERKKERERKERRERKKERKKKEERKKERQKDRQTNWREKE 234
Score = 42.4 bits (98), Expect = 3e-04
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 6 KENEGKPENERNLESEGKPEDE------------GSTEDEGKSDEEEKPDMEGKTECEGK 53
++ E + +R E E K +E G T EGK + E K + + + E +
Sbjct: 90 RKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGK-ERERKEERKREERKERE 148
Query: 54 REDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVP 113
R+ E + + E + + KQ + E++ + E K + + + R E+ E
Sbjct: 149 RKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRER 208
Query: 114 RKAKRKTDRGTDDSPKDSQEDLQERHLSSEE 144
+K ++K + + KD Q + +E+ E
Sbjct: 209 KKERKKKEERKKERQKDRQTNWREKERGKRE 239
Score = 32.7 bits (73), Expect = 0.22
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPG 61
E+ KE E K +R + G+ E+E ++ + + E+ E K E E R++ E
Sbjct: 152 EEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNRKERKKERE--RKERRERK 209
Query: 62 DEGQLEDEGNQEKQGKSEGEDKPQSEGK 89
E + ++E +E+Q + + + GK
Sbjct: 210 KERKKKEERKKERQKDRQTNWREKERGK 237
>gi|55749466 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 53.9 bits (128), Expect = 9e-08
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 79 EGEDKPQSEGKPASQAKPESQPRAAE--KRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQ 136
E E KPQ+ K E P+ AE +P+E+ V ++A+ G + + +ED
Sbjct: 7 ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
Query: 137 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 173
RHL EEM+R ++ R +EE+R+ + K HW QR
Sbjct: 67 VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
Score = 33.9 bits (76), Expect = 0.10
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
M+K +ENEGKP+N E E +P ++ E EG +P EG ++ E + G P
Sbjct: 1 MQKSCEENEGKPQNMPKAE-EDRPLEDVPQEAEG----NPQPSEEGVSQ-EAEGNPRGGP 54
Query: 61 GDEGQ 65
GQ
Sbjct: 55 NQPGQ 59
>gi|23503247 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 53.9 bits (128), Expect = 9e-08
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 79 EGEDKPQSEGKPASQAKPESQPRAAE--KRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQ 136
E E KPQ+ K E P+ AE +P+E+ V ++A+ G + + +ED
Sbjct: 7 ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
Query: 137 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 173
RHL EEM+R ++ R +EE+R+ + K HW QR
Sbjct: 67 VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
Score = 33.9 bits (76), Expect = 0.10
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
M+K +ENEGKP+N E E +P ++ E EG +P EG ++ E + G P
Sbjct: 1 MQKSCEENEGKPQNMPKAE-EDRPLEDVPQEAEG----NPQPSEEGVSQ-EAEGNPRGGP 54
Query: 61 GDEGQ 65
GQ
Sbjct: 55 NQPGQ 59
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 52.8 bits (125), Expect = 2e-07
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 6 KENEGKPENERNLESEGKPED-------------EGSTEDEGKSDEEEKPDMEGKTECEG 52
K + + E ER E E K ED E TE E K + + D + KTE E
Sbjct: 183 KNRQERRERERQREKENKTEDRHSERGRERERERETETETERKRQTDRERDRQRKTERER 242
Query: 53 KREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYV 112
+++ E E E + E + +E++ + D+ + + + Q + Q R R E
Sbjct: 243 EKQAERERASERETERDKERERE-RDRDRDRDRRQKERERQTDRKRQRRTERDRETE--- 298
Query: 113 PRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQ 163
RK +R+ +R + +E +ER E D + +E RK+Q
Sbjct: 299 -RKRERQRERERERERNRKRERERERERERERQRETERDREKERERKRKRQ 348
Score = 49.3 bits (116), Expect = 2e-06
Identities = 37/168 (22%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
++ +G+ E ER ++E + E + E + +++ + + E + + +RE E + E +
Sbjct: 141 RQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENK 200
Query: 66 LED-------EGNQEKQGKSEGEDKPQSEGKPASQAKP--ESQPRAAEKRPAEDYVPRKA 116
ED E +E++ ++E E K Q++ + Q K E + +A +R +E R
Sbjct: 201 TEDRHSERGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDK 260
Query: 117 KRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
+R+ +R D +D +ER ++ + + R E R++Q+
Sbjct: 261 ERERER---DRDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQR 305
Score = 48.1 bits (113), Expect = 5e-06
Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 5/163 (3%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E + + +R+ E + E E + + + D + + + + E E + E EGE G + Q
Sbjct: 83 REKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKERERETEREGERGRDRQ 142
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
+ + +E+Q +E E + Q++ + Q + Q ++ ++ R+ +R+ + T+
Sbjct: 143 TDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTE 202
Query: 126 DSPKD-SQEDLQERHLSSE-EMMRECG---DVSRAQEELRKKQ 163
D + +E +ER +E E R+ D R E R+KQ
Sbjct: 203 DRHSERGRERERERETETETERKRQTDRERDRQRKTEREREKQ 245
Score = 47.4 bits (111), Expect = 9e-06
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 3 KLYKENEGKPENERNLESEGKPEDEGSTE-----DEGKSDEEEKPDMEGKTECEGKREDE 57
K +E E + E ER E E + + E E D + +E + + K + +R+ E
Sbjct: 237 KTEREREKQAERERASERETERDKERERERDRDRDRDRRQKERERQTDRKRQRRTERDRE 296
Query: 58 GEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAK 117
E E Q E E +E+ K E E + + E + + + + + KR + + R+
Sbjct: 297 TERKRERQRERERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERN 356
Query: 118 RKTDR-GTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQ 163
R+T R G + ++ + + + S+ E D R +++ R++Q
Sbjct: 357 RQTGREGRRQAERERERERERDRQSAREREERERDRDRDRQKERERQ 403
Score = 46.2 bits (108), Expect = 2e-05
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E E + ER E+E + E + +G+ + E + D E + E + RE + + Q
Sbjct: 117 REKERNRQKERERETEREGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQ 176
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
E E + +Q + E E + + E K + + R E+ E + KR+TDR D
Sbjct: 177 KEREREKNRQERRERERQREKENKTEDRHSERGRERERER---ETETETERKRQTDRERD 233
Query: 126 DSPKDSQEDLQ--ERHLSSE-------EMMRECG---DVSRAQEELRKK 162
K +E + ER +SE E RE D R Q+E ++
Sbjct: 234 RQRKTEREREKQAERERASERETERDKERERERDRDRDRDRRQKERERQ 282
Score = 45.1 bits (105), Expect = 4e-05
Identities = 33/152 (21%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 13 ENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQ 72
E ER + + + E E E K + + + + E + + +RE E E E Q E E ++
Sbjct: 278 ERERQTDRKRQRRTERDRETERKRERQRERERERERNRKRERERERERERERQRETERDR 337
Query: 73 EKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQ 132
EK+ + + + + + + + Q E + +A +R E R++ R+ + D +D Q
Sbjct: 338 EKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERDRQSAREREERERDRDRDRQ 397
Query: 133 EDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
++ + + + RE + R +E+ R+ ++
Sbjct: 398 KERERQTEKDRDGQRET-EKQREREKDRESER 428
Score = 44.3 bits (103), Expect = 7e-05
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E E + E R E E + E E + E + D E++ + + K + E RE + G EG+
Sbjct: 305 RERERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGR 364
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAE-------KRPAEDYVPRKAKR 118
+ E +E++ + + + + E + + + + R + +R E R+ R
Sbjct: 365 RQAERERERERERDRQSAREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDR 424
Query: 119 KTDRGTDDSPKDSQEDLQER 138
+++RG + + ++ +ER
Sbjct: 425 ESERGRERGREREKQKGRER 444
Score = 38.9 bits (89), Expect = 0.003
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E + E ER E + E E + E + +++ + E + RE E E + +
Sbjct: 54 RERNRQKERERRREKR-QTERETDRKRERRREKDRHRKRDRHRERQRDREKERERQTDRE 112
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
+ + +E+ + E E + + EG+ + + Q +R AE ++ +R+TDR
Sbjct: 113 RDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQRDAE----KERERQTDRERQ 168
Query: 126 DSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQ 163
+ +++ +ER + +E R +E R+K+
Sbjct: 169 RQTERNRQKEREREKNRQE--------RRERERQREKE 198
Score = 38.9 bits (89), Expect = 0.003
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKP---DMEGKTECEGKREDEGEPGDE 63
E E + E ER+ +S + E+ D + E E+ D +G+ E E +RE E + E
Sbjct: 368 ERERERERERDRQSAREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESE 427
Query: 64 GQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRG 123
E +EKQ E + + Q++ + Q K + R A V + + RG
Sbjct: 428 RGRERGREREKQKGRERDRERQTDRQAGRQRKRSTLYVNPPPRTARSGVVQSDPNRPTRG 487
Query: 124 T--DDSPKD 130
SP+D
Sbjct: 488 IRWKSSPED 496
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEE--KPDMEGKTECEGKREDEGEPGDE 63
+E E + E +R E + + E E + + + D E + EG+ + E +RE E E +
Sbjct: 321 RERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERDRQ 380
Query: 64 GQLE-DEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDR 122
E +E +++ + E + Q+E Q + E Q + R +E R +R+ +
Sbjct: 381 SAREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESERGRERGREREKQK 440
Query: 123 GTDDSPKDSQEDLQ 136
G + ++ Q D Q
Sbjct: 441 GR-ERDRERQTDRQ 453
Score = 36.6 bits (83), Expect = 0.015
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 27 EGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQS 86
+G + + E E+ + +TE E R+ E + + + ++E+Q E E + Q+
Sbjct: 50 DGDDRERNRQKERERRREKRQTERETDRKRERRREKDRHRKRDRHRERQRDREKERERQT 109
Query: 87 EGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD-DSPKDSQEDLQ-ERHLSSEE 144
+ + Q + E + +R E R+ +R DR TD ++ Q D + ER ++
Sbjct: 110 DRERDRQREKERNRQKERERETE----REGERGRDRQTDGQRERERQRDAEKERERQTDR 165
Query: 145 MMRECGDVSRAQEELRKKQK 164
+ + +R +E R+K +
Sbjct: 166 ERQRQTERNRQKEREREKNR 185
Score = 29.6 bits (65), Expect = 1.9
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 60 PGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRK 119
PG + G + ++G+D+ ++ K + R EKR E RK +R+
Sbjct: 31 PGSQESPRRRGLGQAHKDADGDDRERNRQK--------ERERRREKRQTERETDRKRERR 82
Query: 120 TDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
++ +E ++R E D R +E R+K++
Sbjct: 83 REKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKER 127
>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
[Homo sapiens]
Length = 666
Score = 51.6 bits (122), Expect = 5e-07
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 25/219 (11%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPG-DEGQ 65
E+EG + + SE + ++ ++DE K E+K D + + ++E G DE +
Sbjct: 117 EDEGHRSDGGSHHSEAEGSEKAHSDDE-KWGREDKSDQSDDEKIQNSDDEERAQGSDEDK 175
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPA-------------EDYV 112
L++ + EK ++ E++PQ Q E + + ++RP E+
Sbjct: 176 LQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDDEEQP 235
Query: 113 PRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRA----QEELRKKQKMGGF 168
+ K D+ P+ S E + RH EE + +R E LR K+K
Sbjct: 236 QLSDEEKMQNSDDERPQASDE--EHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIA 293
Query: 169 HWMQRDVQDPFAPRGQRGVRGVRGGG---RGQKDLEDVP 204
+ D D P+ G + GG D ED P
Sbjct: 294 SDSEAD-SDTEVPKDNSGTMDLFGGADDISSGSDGEDKP 331
Score = 40.8 bits (94), Expect = 8e-04
Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 37/192 (19%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKS------------------DEEEKPD 43
EK + ++E +++ +S+ + E+ + D+EE+P
Sbjct: 136 EKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGSDEDKLQNSDDDEKMQNTDDEERPQ 195
Query: 44 MEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAA 103
+ + E++ DE + + + EKQ S+ E++PQ + Q + +P+A+
Sbjct: 196 LSDDERQQLSEEEKANSDDERPVASDNDDEKQ-NSDDEEQPQLSDEEKMQNSDDERPQAS 254
Query: 104 --EKRPAEDYVPRKAKRKTDRGTD----------------DSPKDSQEDLQERHLSSEEM 145
E R ++D + K ++ RG+D DS DS ++ + + + ++
Sbjct: 255 DEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAIASDSEADSDTEVPKDNSGTMDL 314
Query: 146 MRECGDVSRAQE 157
D+S +
Sbjct: 315 FGGADDISSGSD 326
Score = 40.0 bits (92), Expect = 0.001
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 19 ESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQ----EK 74
E+ EDEG D G E EG + E G Q +DE Q E+
Sbjct: 111 EAPNDDEDEGHRSDGGSHHSEA----EGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEE 166
Query: 75 QGKSEGEDKPQS--EGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDR---GTDDSPK 129
+ + EDK Q+ + + E +P+ ++ + KA +R +D K
Sbjct: 167 RAQGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEK 226
Query: 130 DSQEDLQERHLSSEEMMRECGD 151
+ +D ++ LS EE M+ D
Sbjct: 227 QNSDDEEQPQLSDEEKMQNSDD 248
Score = 39.7 bits (91), Expect = 0.002
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 26/160 (16%)
Query: 8 NEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQL- 66
+ G+P N+ + EDEG++ G + E+ D + ED +P D Q
Sbjct: 52 DSGQPSNKELFGDDS--EDEGASHHSGSDNHSERSDNRSEASERSDHEDN-DPSDVDQHS 108
Query: 67 --------EDEGNQEKQG----KSEGEDKPQSEGKP------ASQAKPESQPRAAEKRPA 108
EDEG++ G ++EG +K S+ + + Q+ E + ++ A
Sbjct: 109 GSEAPNDDEDEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERA 168
Query: 109 EDYVPRKAKRKTD----RGTDDSPKDSQEDLQERHLSSEE 144
+ K + D + TDD + D + + LS EE
Sbjct: 169 QGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEE 208
Score = 38.9 bits (89), Expect = 0.003
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 4/139 (2%)
Query: 14 NERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDE----GQLEDE 69
++ + E+E K D GS D + + + G + +R D G+P ++ EDE
Sbjct: 10 SDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDE 69
Query: 70 GNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPK 129
G G ++ + + + ++ E + + + P + + R S
Sbjct: 70 GASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHH 129
Query: 130 DSQEDLQERHLSSEEMMRE 148
E ++ H E+ RE
Sbjct: 130 SEAEGSEKAHSDDEKWGRE 148
Score = 38.1 bits (87), Expect = 0.005
Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 35/184 (19%)
Query: 2 EKLYKENEGKPE--NERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDE-- 57
EK ++E +P+ +E +++ + S E+ SD+EE+ D + ++ EDE
Sbjct: 225 EKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVL 284
Query: 58 -------------GEPGDEGQLEDEGNQEKQGK-------SEGEDKPQSEGKPASQAKPE 97
+ E ++ G + G S+GEDKP + G+P +
Sbjct: 285 RMKRKNAIASDSEADSDTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLP 344
Query: 98 SQPRAAEKRPAEDYVPRKAKRKTDRGTD-----------DSPKDSQEDLQERHLSSEEMM 146
+ E P K TD G D P+ E EEM+
Sbjct: 345 QDQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEML 404
Query: 147 RECG 150
E G
Sbjct: 405 DEEG 408
Score = 33.1 bits (74), Expect = 0.17
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 9/151 (5%)
Query: 36 SDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQA- 94
+D E+ + +E E K D G D Q G +D+ G+P+++
Sbjct: 2 ADMEDLFGSDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKEL 61
Query: 95 -KPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSE-------EMM 146
+S+ A D ++ +++ +D+ ++H SE E
Sbjct: 62 FGDDSEDEGASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGH 121
Query: 147 RECGDVSRAQEELRKKQKMGGFHWMQRDVQD 177
R G ++ E +K W + D D
Sbjct: 122 RSDGGSHHSEAEGSEKAHSDDEKWGREDKSD 152
>gi|169218106 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 436
Score = 51.2 bits (121), Expect = 6e-07
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Query: 6 KENEGKPENERNL--ESEGKP-EDEGST-EDEGKSDEEEKPDMEGKTECEGKREDEGEPG 61
+E EG+ + E EG+ E EG E EG+ E+E+ E + + + + E GE
Sbjct: 167 REQEGQVREQEGQVREQEGQVREQEGQMGEQEGQMGEQEEQMGEQEEQMQKQEEQMGEQE 226
Query: 62 DEGQLEDE--GNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRK 119
++ + ++E G QE+Q + + E + E + Q + + + E + +K + +
Sbjct: 227 EQMRKQEEQMGEQEEQVQKQEEQVQKQEEQMRKQEEQMREQEEQMREQEEQMLKQKEQTE 286
Query: 120 TDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
+ T + + +E +E+ EE MRE + R QEE KQ+
Sbjct: 287 QEEQTGEQEEQMREQ-EEQMREQEEQMREQEEQMREQEEQMGKQE 330
Score = 49.7 bits (117), Expect = 2e-06
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 27/172 (15%)
Query: 6 KENEGKPENERNL--ESEGKP-EDEGST-EDEGKSDEEEKP--DMEGKT-ECEGK-REDE 57
+E EG+ + E EG+ E EG E EG+ E+E + EG+ E EG+ RE E
Sbjct: 125 REQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQEGQVREQE 184
Query: 58 GEPGD-EGQL-EDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRK 115
G+ + EGQ+ E EG +Q + GE + Q + + + E Q R E++ E
Sbjct: 185 GQVREQEGQMGEQEGQMGEQEEQMGEQEEQMQKQEEQMGEQEEQMRKQEEQMGEQ----- 239
Query: 116 AKRKTDRGTDDSPKDSQEDLQ---ERHLSSEEMMRECGDVSRAQEELRKKQK 164
++ + +E +Q E+ EE MRE + R QEE KQK
Sbjct: 240 ---------EEQVQKQEEQVQKQEEQMRKQEEQMREQEEQMREQEEQMLKQK 282
Score = 46.6 bits (109), Expect = 1e-05
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 2 EKLYKENEGKPENERNLESEGKP-EDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
E++ K+ E + E+ E E + E E ++ + E++ M + E GK+E++
Sbjct: 276 EQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQMREQEEQMREQEEQMGKQEEQMWE 335
Query: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEK--RPAEDYVPRKAKR 118
E E + KQ + GE + Q + + K E Q R E+ R E+ + ++ ++
Sbjct: 336 QKEQMWEQKEQMWKQEEQMGEQEEQMQKQEEQVRKQEEQMRKQEEQMRKQEEQMRKQEEQ 395
Query: 119 KTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
++ K+ + +E+ EE M E + R QEE +QK
Sbjct: 396 MGEQ------KEQMGEQKEQMREQEEQMGEQKEQMRKQEEHMGEQK 435
Score = 40.4 bits (93), Expect = 0.001
Identities = 34/168 (20%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Query: 6 KENEGKPENERNLESE--GKPEDEGSTEDEGKSDEEE----KPDMEGKTECEGKREDEGE 59
+E G+ E + + E G+ E++ ++E ++EE + + K E + ++++E
Sbjct: 205 EEQMGEQEEQMQKQEEQMGEQEEQMRKQEEQMGEQEEQVQKQEEQVQKQEEQMRKQEEQM 264
Query: 60 PGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRK 119
E Q+ ++ Q + K + E + Q+ + + E Q R E++ E + + +
Sbjct: 265 REQEEQMREQEEQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQMREQEEQMREQEE 324
Query: 120 TDRGTDDSPKDSQEDL---QERHLSSEEMMRECGDVSRAQEELRKKQK 164
++ + +E + +E+ EE M E + + QEE +KQ+
Sbjct: 325 QMGKQEEQMWEQKEQMWEQKEQMWKQEEQMGEQEEQMQKQEEQVRKQE 372
Score = 40.4 bits (93), Expect = 0.001
Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPG 61
E++ K+ E E E + + + E + + + ++ +K + + + + E RE E +
Sbjct: 213 EQMQKQEEQMGEQEEQMRKQEEQMGEQEEQVQKQEEQVQKQEEQMRKQEEQMREQEEQMR 272
Query: 62 D-EGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEK--RPAEDYVPRKAKR 118
+ E Q+ + Q +Q + GE + Q + + E Q R E+ R E+ + ++ ++
Sbjct: 273 EQEEQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQMREQEEQMREQEEQMGKQEEQ 332
Query: 119 KTDRGT------------DDSPKDSQEDLQ---ERHLSSEEMMRECGDVSRAQEE-LRKK 162
++ ++ + +E +Q E+ EE MR+ + R QEE +RK+
Sbjct: 333 MWEQKEQMWEQKEQMWKQEEQMGEQEEQMQKQEEQVRKQEEQMRKQEEQMRKQEEQMRKQ 392
Query: 163 QKMGG 167
++ G
Sbjct: 393 EEQMG 397
Score = 37.4 bits (85), Expect = 0.009
Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEG-- 64
E EG+ + E G+ E++ ++E ++EE+ M + E G++E++ + +E
Sbjct: 196 EQEGQMGEQE--EQMGEQEEQMQKQEEQMGEQEEQ--MRKQEEQMGEQEEQVQKQEEQVQ 251
Query: 65 -QLEDEGNQEKQGKSEGEDKPQSEG---KPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 120
Q E QE+Q + + E + E K Q + E Q E++ E + + +
Sbjct: 252 KQEEQMRKQEEQMREQEEQMREQEEQMLKQKEQTEQEEQTGEQEEQMREQEEQMREQEEQ 311
Query: 121 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQD 177
R ++ ++ +E + ++ E+M + + +E++ K+++ G Q Q+
Sbjct: 312 MREQEEQMREQEEQMGKQ---EEQMWEQKEQMWEQKEQMWKQEEQMGEQEEQMQKQE 365
>gi|239747174 PREDICTED: hypothetical protein XP_002343931, partial
[Homo sapiens]
Length = 213
Score = 51.2 bits (121), Expect = 6e-07
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPG 61
E + E + + + ERN E + E E T+ EG+ E + D + + E E +R+ E E
Sbjct: 40 EDRHSERDRQRDRERNRERDRDREREKQTDREGERQRERERDRDRQRETERERDKERET- 98
Query: 62 DEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTD 121
+ E + ++KQ + E E E + + E Q R E R+A+R+ +
Sbjct: 99 -DRHTETDRERQKQKEREMERVRDREREKQKEMGRERQTDRETDRERE----RQAERERE 153
Query: 122 RGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
G + +D + + E RE + R + R++Q+
Sbjct: 154 TGRERKTEDRHRERERERKRERERKRETKERERHTDMERERQR 196
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTEC--EGKREDEGEPGDE 63
++ E + + +R E+E + + E T+ ++D E + E + E + +RE + E G E
Sbjct: 74 RQRERERDRDRQRETERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGRE 133
Query: 64 GQLEDEGNQEK--QGKSEGED----KPQSEGKPASQAKPESQPRAAEKRPAEDY--VPRK 115
Q + E ++E+ Q + E E K + + + + + R E + E + + R+
Sbjct: 134 RQTDRETDRERERQAERERETGRERKTEDRHRERERERKRERERKRETKERERHTDMERE 193
Query: 116 AKRKTDRGTDDSPKDSQE 133
+R+TDR D + +E
Sbjct: 194 RQRETDRKRDRQRESERE 211
Score = 32.7 bits (73), Expect = 0.22
Identities = 30/149 (20%), Positives = 60/149 (40%), Gaps = 10/149 (6%)
Query: 19 ESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKS 78
++EG+ + + + + + D E E K ED D Q + E N+E+
Sbjct: 4 KTEGRHTHTETETMDRQRERRRETDRERDRAKESKTEDRHSERDR-QRDRERNRERDRDR 62
Query: 79 EGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD---DSPKDSQEDL 135
E E + EG+ + + + R E R +R+TDR T+ + K + ++
Sbjct: 63 EREKQTDREGERQRERERD------RDRQRETERERDKERETDRHTETDRERQKQKEREM 116
Query: 136 QERHLSSEEMMRECGDVSRAQEELRKKQK 164
+ E +E G + E ++++
Sbjct: 117 ERVRDREREKQKEMGRERQTDRETDRERE 145
Score = 31.6 bits (70), Expect = 0.50
Identities = 26/140 (18%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 30 TEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGK 89
++ EG+ E M+ + E + + E + E + ED ++ + D+ ++ +
Sbjct: 3 SKTEGRHTHTETETMDRQRERRRETDRERDRAKESKTEDRHSE----RDRQRDRERNRER 58
Query: 90 PASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSS--EEMMR 147
+ + + R E++ R+ +R DR + + +E +RH + E +
Sbjct: 59 DRDREREKQTDREGERQ-------RERERDRDRQRETERERDKERETDRHTETDRERQKQ 111
Query: 148 ECGDVSRAQEELRKKQKMGG 167
+ ++ R ++ R+KQK G
Sbjct: 112 KEREMERVRDREREKQKEMG 131
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 51.2 bits (121), Expect = 6e-07
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 4/152 (2%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
KE + + E ER E E K ++ G +D D+E + D E E + +RE E E +
Sbjct: 391 KEKDREKEREREKERE-KEKERGKNKDR---DKEREKDREKDKEKDREREREKEHEKDRD 446
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
E E Q+K+ + E + + + K K + PR+ R+ +R+ R +
Sbjct: 447 KEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 506
Query: 126 DSPKDSQEDLQERHLSSEEMMRECGDVSRAQE 157
SP+ S+ ++ S R D R +E
Sbjct: 507 RSPRTSKTIKRKSSRSPSPRSRNKKDKKREKE 538
Score = 38.1 bits (87), Expect = 0.005
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 16/162 (9%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGK--SDEEEKPDMEGKTECEGKREDEGEPGDE 63
K ++ K + + S + +D ++ K S E+ ++ KR+D E E
Sbjct: 327 KRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKE 386
Query: 64 GQLEDEGNQEKQGKSEGE-DKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDR 122
+ E ++EK+ + E E +K + GK + K + R +K + R+ +++ ++
Sbjct: 387 KERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDRE---REREKEHEK 443
Query: 123 GTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
D + Q+ +ER D S+ +E RKK K
Sbjct: 444 DRDKEKEKEQDKEKERE----------KDRSKEIDEKRKKDK 475
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 51.2 bits (121), Expect = 6e-07
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 4/152 (2%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
KE + + E ER E E K ++ G +D D+E + D E E + +RE E E +
Sbjct: 275 KEKDREKEREREKERE-KEKERGKNKDR---DKEREKDREKDKEKDREREREKEHEKDRD 330
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTD 125
E E Q+K+ + E + + + K K + PR+ R+ +R+ R +
Sbjct: 331 KEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 390
Query: 126 DSPKDSQEDLQERHLSSEEMMRECGDVSRAQE 157
SP+ S+ ++ S R D R +E
Sbjct: 391 RSPRTSKTIKRKSSRSPSPRSRNKKDKKREKE 422
Score = 38.1 bits (87), Expect = 0.005
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 16/162 (9%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGK--SDEEEKPDMEGKTECEGKREDEGEPGDE 63
K ++ K + + S + +D ++ K S E+ ++ KR+D E E
Sbjct: 211 KRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKE 270
Query: 64 GQLEDEGNQEKQGKSEGE-DKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDR 122
+ E ++EK+ + E E +K + GK + K + R +K + R+ +++ ++
Sbjct: 271 KERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDRE---REREKEHEK 327
Query: 123 GTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
D + Q+ +ER D S+ +E RKK K
Sbjct: 328 DRDKEKEKEQDKEKERE----------KDRSKEIDEKRKKDK 359
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 50.4 bits (119), Expect = 1e-06
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPD-----MEGKTECEGKRE 55
M KL N +SE + +DE +DE + +EEE + +G E E
Sbjct: 619 MTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
Query: 56 DEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQA 94
DE E GDE + +DE + + E ED +SEG +S +
Sbjct: 679 DESEDGDENEEDDEDEDDDEDDDEDEDN-ESEGSSSSSS 716
Score = 41.2 bits (95), Expect = 6e-04
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E++ + E++ + + E + ++ G + ++G E + E + E + +DE E DE
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 700
Query: 66 LEDEGNQEKQGKSEGEDKPQS 86
EDE N+ + S S
Sbjct: 701 DEDEDNESEGSSSSSSSSGDS 721
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGE 59
E+ + E+E E+E EDE ED+ DE+E + EG + D +
Sbjct: 674 ESSSEDESEDGDENEEDDEDEDDDEDD---DEDEDNESEGSSSSSSSSGDSSD 723
Score = 28.1 bits (61), Expect = 5.5
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 30 TEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGK 89
T+ G + + + ++ K+E E ED+ E D+ + EDE ++ + ED G
Sbjct: 620 TKLRGPNPKSSRTTLQSKSESE---EDDEEDEDD-EDEDEEEEDDENGDSSED-----GG 670
Query: 90 PASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQED 134
+S++ E + ++ +D + + D DD +D++ +
Sbjct: 671 DSSESSSEDESEDGDENEEDD------EDEDDDEDDDEDEDNESE 709
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 50.4 bits (119), Expect = 1e-06
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPD-----MEGKTECEGKRE 55
M KL N +SE + +DE +DE + +EEE + +G E E
Sbjct: 619 MTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
Query: 56 DEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQA 94
DE E GDE + +DE + + E ED +SEG +S +
Sbjct: 679 DESEDGDENEEDDEDEDDDEDDDEDEDN-ESEGSSSSSS 716
Score = 41.2 bits (95), Expect = 6e-04
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E++ + E++ + + E + ++ G + ++G E + E + E + +DE E DE
Sbjct: 641 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 700
Query: 66 LEDEGNQEKQGKSEGEDKPQS 86
EDE N+ + S S
Sbjct: 701 DEDEDNESEGSSSSSSSSGDS 721
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGE 59
E+ + E+E E+E EDE ED+ DE+E + EG + D +
Sbjct: 674 ESSSEDESEDGDENEEDDEDEDDDEDD---DEDEDNESEGSSSSSSSSGDSSD 723
Score = 28.1 bits (61), Expect = 5.5
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 30 TEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGK 89
T+ G + + + ++ K+E E ED+ E D+ + EDE ++ + ED G
Sbjct: 620 TKLRGPNPKSSRTTLQSKSESE---EDDEEDEDD-EDEDEEEEDDENGDSSED-----GG 670
Query: 90 PASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQED 134
+S++ E + ++ +D + + D DD +D++ +
Sbjct: 671 DSSESSSEDESEDGDENEEDD------EDEDDDEDDDEDEDNESE 709
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 50.4 bits (119), Expect = 1e-06
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPD-----MEGKTECEGKRE 55
M KL N +SE + +DE +DE + +EEE + +G E E
Sbjct: 656 MTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 715
Query: 56 DEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQA 94
DE E GDE + +DE + + E ED +SEG +S +
Sbjct: 716 DESEDGDENEEDDEDEDDDEDDDEDEDN-ESEGSSSSSS 753
Score = 41.2 bits (95), Expect = 6e-04
Identities = 19/81 (23%), Positives = 39/81 (48%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQ 65
+E++ + E++ + + E + ++ G + ++G E + E + E + +DE E DE
Sbjct: 678 EEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 737
Query: 66 LEDEGNQEKQGKSEGEDKPQS 86
EDE N+ + S S
Sbjct: 738 DEDEDNESEGSSSSSSSSGDS 758
Score = 28.9 bits (63), Expect = 3.2
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGE 59
E+ + E+E E+E EDE ED+ DE+E + EG + D +
Sbjct: 711 ESSSEDESEDGDENEEDDEDEDDDEDD---DEDEDNESEGSSSSSSSSGDSSD 760
Score = 28.1 bits (61), Expect = 5.5
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 30 TEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGK 89
T+ G + + + ++ K+E E ED+ E D+ + EDE ++ + ED G
Sbjct: 657 TKLRGPNPKSSRTTLQSKSESE---EDDEEDEDD-EDEDEEEEDDENGDSSED-----GG 707
Query: 90 PASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQED 134
+S++ E + ++ +D + + D DD +D++ +
Sbjct: 708 DSSESSSEDESEDGDENEEDD------EDEDDDEDDDEDEDNESE 746
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 49.3 bits (116), Expect = 2e-06
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 21 EGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEKQGKSEG 80
E + E+ TE+ + +E+E + EGK E EG E+E E G+E + + E
Sbjct: 458 EEQTEETQVTEEVTEEEEKEAKEEEGKEE-EGGEEEEAEGGEEETKSPPAEEAASPEKEA 516
Query: 81 EDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQERHL 140
+ + E K ++AK + A K PAE P KAK + SP +++ +E
Sbjct: 517 KSPVKEEAKSPAEAKSPEKEEA--KSPAEVKSPEKAKSPA-KEEAKSPPEAKSPEKEEAK 573
Query: 141 SSEEMMRECGDVSRAQEELR 160
S E+ S A+EE +
Sbjct: 574 SPAEVKSPEKAKSPAKEEAK 593
Score = 47.4 bits (111), Expect = 9e-06
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Query: 2 EKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPG 61
E+ E E E+ + E E+EG E+E + EEE + ++E +
Sbjct: 462 EETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVK 521
Query: 62 DEGQ--LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAE------KRPAEDYVP 113
+E + E + ++++ KS E K + K ++ + +S P A K PAE P
Sbjct: 522 EEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSP 581
Query: 114 RKAKRKTDRGTDD-----SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
KAK SP+ ++ ++E S E + +++ E++ +K
Sbjct: 582 EKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEK 637
Score = 45.1 bits (105), Expect = 4e-05
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 9 EGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEG---EPGDEGQ 65
E K E + + PE E + E K D + K KTE K D+ EP +
Sbjct: 891 EAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKE----KTEVAKKEPDDAKAKEPSKPAE 946
Query: 66 LEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAK-RKTDRGT 124
++ ++K K E KP E KP ++AK + + K P++ + K TD+
Sbjct: 947 KKEAAPEKKDTKEEKAKKP--EEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSSTDQKD 1004
Query: 125 DDSPKDSQED 134
P+ + ED
Sbjct: 1005 SKPPEKATED 1014
Score = 38.5 bits (88), Expect = 0.004
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 3/148 (2%)
Query: 18 LESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQLEDEGNQEK-QG 76
++SE K + +E E EE+ + + E + E E + +EG+ E+ G +E+ +G
Sbjct: 438 VKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKE-EEGKEEEGGEEEEAEG 496
Query: 77 KSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDSQEDLQ 136
E P +E + + + +S + K PAE P K + K+ SP+ ++ +
Sbjct: 497 GEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEV-KSPEKAKSPAK 555
Query: 137 ERHLSSEEMMRECGDVSRAQEELRKKQK 164
E S E + +++ E++ +K
Sbjct: 556 EEAKSPPEAKSPEKEEAKSPAEVKSPEK 583
Score = 38.5 bits (88), Expect = 0.004
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Query: 6 KENEGKPENERNLESEGKP-EDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEG 64
KE P ++ E P ++E + E KS E+E E K+ E K ++ +
Sbjct: 535 KEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKE----EAKSPAEVKSPEKAK----S 586
Query: 65 QLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGT 124
++E + KS + K + + S A+ +S + K PAE P KAK T +
Sbjct: 587 PAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPT-KEE 645
Query: 125 DDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
SP+ ++ +E S E+ +++ E+ + K
Sbjct: 646 AKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVK 685
Score = 37.7 bits (86), Expect = 0.007
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 22/175 (12%)
Query: 6 KENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEG------E 59
KE K E + ++ E KP++ E K++EE+ P E + +++E +
Sbjct: 812 KEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPK 871
Query: 60 PGDEGQLEDEGNQEKQG-----KSEGEDK-----PQSEGKPASQAKPESQPRAAEKRPAE 109
P E + E + K+ K E EDK P+ E + K +++P+ EK
Sbjct: 872 PKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPK--EKTEVA 929
Query: 110 DYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
P AK K P + +E E+ + EE ++ + + + + ++ K
Sbjct: 930 KKEPDDAKAK----EPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDK 980
Score = 32.7 bits (73), Expect = 0.22
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 17/166 (10%)
Query: 6 KENEGKPENERNLESEGKPEDEGS---TEDEGKSDEEEKPDMEGKTECEGKREDEGEPGD 62
KE PE ++ E E E + + E KS E+ K ++ + + K
Sbjct: 643 KEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKA-------- 694
Query: 63 EGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYV--PRKAKRKT 120
+ +++E ++ KS +++ +S K S K E++ K P ++ P KAK
Sbjct: 695 KSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPE 754
Query: 121 DRGTDD--SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 164
T D SP+ +E +++ + S +EE++ +K
Sbjct: 755 KAKTLDVKSPEAKTPAKEEARSPADKFPEKA--KSPVKEEVKSPEK 798
Score = 31.6 bits (70), Expect = 0.50
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 11 KPENERNLESEGKPEDEGSTEDEGKSDEEEK---PDMEGKTECEGKREDEGEPGDEGQLE 67
K ++ + KP ++ E K +EEK P+ + KTE + K +D+ + + +
Sbjct: 931 KEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPK 990
Query: 68 DEGNQEKQGKSEGEDKPQSEGKPASQAK 95
E ++ + + KP + AK
Sbjct: 991 AEKAEKSSSTDQKDSKPPEKATEDKAAK 1018
Score = 31.2 bits (69), Expect = 0.65
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEGQL 66
E PE + L+ + PE + ++E +S ++ P+ K + K E + + L
Sbjct: 748 EKAKSPEKAKTLDVKS-PEAKTPAKEEARSPADKFPE---KAKSPVKEEVKSPEKAKSPL 803
Query: 67 EDEGN---------QEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAK 117
+++ +E + + E+KPQ + K + P+ AE+ A K +
Sbjct: 804 KEDAKAPEKEIPKKEEVKSPVKEEEKPQ-------EVKVKEPPKKAEEEKAP--ATPKTE 854
Query: 118 RKTDRGTDDSPKDS--QEDLQERHLSSEEMMRECGDVSRAQEELRKKQKM 165
K D +++PK + ++E+ + E +E V +EE K+K+
Sbjct: 855 EKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKE-SKVEAKKEEAEDKKKV 903
Score = 28.1 bits (61), Expect = 5.5
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 6 KENEGKPENERNLESEGK-PEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEPGDEG 64
++ E PE + E + K PE++ TE + K D++ K + E + +
Sbjct: 946 EKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSSTDQKDS 1005
Query: 65 QLEDEGNQEKQGKSE 79
+ ++ ++K K +
Sbjct: 1006 KPPEKATEDKAAKGK 1020
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.301 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,514,708
Number of Sequences: 37866
Number of extensions: 639550
Number of successful extensions: 18299
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 811
Number of HSP's that attempted gapping in prelim test: 4118
Number of HSP's gapped (non-prelim): 7984
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.