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Search of human proteins with 61102725
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61102725 la related protein isoform 2 [Homo sapiens]
(1096 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61102725 la related protein isoform 2 [Homo sapiens] 2272 0.0
gi|39725634 la related protein isoform 1 [Homo sapiens] 1973 0.0
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 1038 0.0
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 514 e-145
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 293 8e-79
gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens] 100 1e-20
gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens] 100 1e-20
gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens] 100 1e-20
gi|40353738 c-Mpl binding protein isoform a [Homo sapiens] 74 1e-12
gi|40353736 c-Mpl binding protein isoform c [Homo sapiens] 74 1e-12
gi|40353740 c-Mpl binding protein isoform b [Homo sapiens] 74 1e-12
gi|10835067 autoantigen La [Homo sapiens] 67 1e-10
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 58 4e-08
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 58 4e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 57 1e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 55 3e-07
gi|57634536 La ribonucleoprotein domain family, member 4B [Homo ... 55 4e-07
gi|37537710 La ribonucleoprotein domain family, member 6 isoform... 54 1e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 53 1e-06
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 52 3e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 51 7e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 51 7e-06
gi|39812378 RAN binding protein 9 [Homo sapiens] 50 1e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 49 3e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 49 3e-05
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 49 3e-05
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 48 4e-05
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 48 4e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 48 6e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 48 6e-05
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 2272 bits (5888), Expect = 0.0
Identities = 1096/1096 (100%), Positives = 1096/1096 (100%)
Query: 1 MATQVEPLLPGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPC 60
MATQVEPLLPGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPC
Sbjct: 1 MATQVEPLLPGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPC 60
Query: 61 AKPHKEGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAP 120
AKPHKEGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAP
Sbjct: 61 AKPHKEGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAP 120
Query: 121 PPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPG 180
PPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPG
Sbjct: 121 PPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPG 180
Query: 181 EIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQR 240
EIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQR
Sbjct: 181 EIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQR 240
Query: 241 GGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVA 300
GGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVA
Sbjct: 241 GGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVA 300
Query: 301 PPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFD 360
PPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFD
Sbjct: 301 PPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFD 360
Query: 361 YQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNL 420
YQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNL
Sbjct: 361 YQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNL 420
Query: 421 ERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEP 480
ERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEP
Sbjct: 421 ERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEP 480
Query: 481 EKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKT 540
EKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKT
Sbjct: 481 EKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKT 540
Query: 541 LPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQD 600
LPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQD
Sbjct: 541 LPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQD 600
Query: 601 EQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGD 660
EQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGD
Sbjct: 601 EQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGD 660
Query: 661 RTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQF 720
RTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQF
Sbjct: 661 RTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQF 720
Query: 721 DTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNT 780
DTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNT
Sbjct: 721 DTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNT 780
Query: 781 RTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSRE 840
RTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSRE
Sbjct: 781 RTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSRE 840
Query: 841 HRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNE 900
HRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNE
Sbjct: 841 HRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNE 900
Query: 901 RKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSY 960
RKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSY
Sbjct: 901 RKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSY 960
Query: 961 GLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRR 1020
GLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRR
Sbjct: 961 GLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRR 1020
Query: 1021 LEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVRE 1080
LEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVRE
Sbjct: 1021 LEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVRE 1080
Query: 1081 DAKWTSQHSNTQTLGK 1096
DAKWTSQHSNTQTLGK
Sbjct: 1081 DAKWTSQHSNTQTLGK 1096
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 1973 bits (5112), Expect = 0.0
Identities = 960/986 (97%), Positives = 964/986 (97%), Gaps = 1/986 (0%)
Query: 112 GRRDFVE-APPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDF 170
GR++ V A P+ P P + S PEHSAPAKVVRAAVPKQRKGSKVGDF
Sbjct: 34 GRKNSVALAAAPRKEPTGDREKPLPFPVLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDF 93
Query: 171 GDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGE 230
GDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGE
Sbjct: 94 GDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGE 153
Query: 231 EKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKG 290
EKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKG
Sbjct: 154 EKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKG 213
Query: 291 SESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGR 350
SESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGR
Sbjct: 214 SESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGR 273
Query: 351 GRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQ 410
GRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQ
Sbjct: 274 GRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQ 333
Query: 411 IEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIV 470
IEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIV
Sbjct: 334 IEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIV 393
Query: 471 DEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPT 530
DEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPT
Sbjct: 394 DEKVRRREEPEKWPLPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPT 453
Query: 531 KTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLP 590
KTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLP
Sbjct: 454 KTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLP 513
Query: 591 SQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTP 650
SQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTP
Sbjct: 514 SQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQTP 573
Query: 651 HYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFK 710
HYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFK
Sbjct: 574 HYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENFK 633
Query: 711 KVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTT 770
KVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTT
Sbjct: 634 KVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTT 693
Query: 771 VPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLES 830
VPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLES
Sbjct: 694 VPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLES 753
Query: 831 HVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVY 890
HVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVY
Sbjct: 754 HVGWVMDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVY 813
Query: 891 HKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYG 950
HKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYG
Sbjct: 814 HKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYG 873
Query: 951 LECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPK 1010
LECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPK
Sbjct: 874 LECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPK 933
Query: 1011 LQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPP 1070
LQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPP
Sbjct: 934 LQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPP 993
Query: 1071 TPPTGQPVREDAKWTSQHSNTQTLGK 1096
TPPTGQPVREDAKWTSQHSNTQTLGK
Sbjct: 994 TPPTGQPVREDAKWTSQHSNTQTLGK 1019
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 1038 bits (2683), Expect = 0.0
Identities = 545/938 (58%), Positives = 672/938 (71%), Gaps = 52/938 (5%)
Query: 175 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 233
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 234 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 293
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
Query: 294 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 353
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
Query: 354 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 412
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
Query: 413 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 472
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
Query: 473 KVRRREEPEKWPLP--PIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPV-P 529
K+R++ EPEKWP+P P TDFSQL++CPEFVP Q + TESAP SPR +P+ P
Sbjct: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSP 344
Query: 530 TKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQL 589
K E S L+ + +GLS SLPDLDSE WIEVKKR +P+P + ++S S+P+
Sbjct: 345 KKNSETSILQAMSRGLSTSLPDLDSEPWIEVKKRHQPAPVKLRES--------VSVPEG- 395
Query: 590 PSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQT 649
QL S ++ EQEELDFLFDEE+EQ+ GRKNTFT WSD +SDYEIDD+D+NKILIVTQT
Sbjct: 396 SLNQLCSSEEPEQEELDFLFDEEIEQI-GRKNTFTDWSDNDSDYEIDDQDLNKILIVTQT 454
Query: 650 PHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIKQEVENF 709
P Y+++HPGGDRTG H SRAK+++ELAKVINDGL+YYEQDLW E+ E +++ IKQEVENF
Sbjct: 455 PPYVKKHPGGDRTGTHMSRAKITSELAKVINDGLYYYEQDLWMEEDENKHTAIKQEVENF 514
Query: 710 KKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQ--------VP----TDALANKLFGA 757
KK+N+IS+EQF+ LTPE P +PNQEVP P + +Q +P TD LA KLF
Sbjct: 515 KKLNLISKEQFENLTPELPFEPNQEVPVAPSQSRQGGVQGVLHIPKKDLTDELAQKLFDV 574
Query: 758 PEPSTIA--RSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMP 815
E ++ A SLPT VPESP TRTP+TPRTP+L+D ++T RFYPVVKE + +D K P
Sbjct: 575 SEITSAAMVHSLPTAVPESPRIHPTRTPKTPRTPRLQDPNKTPRFYPVVKEPKAIDVKSP 634
Query: 816 RKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSS---PSEGTPTVGSYGCTPQSLPKF 872
RKRKTRHS+NPPLE HVGWVMDSR+ P T+S+S+S PSEG P GSYGCTP S PKF
Sbjct: 635 RKRKTRHSTNPPLECHVGWVMDSRDRGPGTSSVSTSNASPSEGAPLAGSYGCTPHSFPKF 694
Query: 873 QHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMY 932
QHPSHELLKENGFTQ VYHKYRRRCL+ERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMY
Sbjct: 695 QHPSHELLKENGFTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMY 754
Query: 933 EEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEK 992
EEF+QLA EDAKE YRYGLECLFR+YSYGLEKKFR +IF+DFQEET KDYE+GQLYGLEK
Sbjct: 755 EEFRQLAWEDAKENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEK 814
Query: 993 FWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRK 1052
FWA+LKYS++K IDPKLQEYL F+RLEDFRVDPP+ +E KRHS + G R
Sbjct: 815 FWAYLKYSQSKTQSIDPKLQEYLCSFKRLEDFRVDPPISDEFGRKRHS--STSGEESNRH 872
Query: 1053 RCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSN 1090
R P SS++P T P+ + S S+
Sbjct: 873 RLPPNSSTKPPNAAKPTSTSELQVPINSPRRNISPESS 910
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 514 bits (1323), Expect = e-145
Identities = 280/534 (52%), Positives = 367/534 (68%), Gaps = 33/534 (6%)
Query: 175 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 233
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 234 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 293
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
Query: 294 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 353
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
Query: 354 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 412
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
Query: 413 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 472
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
Query: 473 KVRRREEPEKWPL--PPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPV-P 529
K+R++ EPEKWP+ PP TDFSQL++CPEFVP Q + TESAP SPR +P+ P
Sbjct: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSP 344
Query: 530 TKTEEVSNLKTLPKGLSASLPDLDSENWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQL 589
K E S L+ + +GLS SLPDLDSE WIEVKKR +P+P + ++S S+P+
Sbjct: 345 KKNSETSILQAMSRGLSTSLPDLDSEPWIEVKKRHQPAPVKLRES--------VSVPEG- 395
Query: 590 PSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEESDYEIDDRDVNKILIVTQT 649
QL S ++ EQEELDFLFDEE+EQ+ GRKNTFT WSD +SDYEIDD+D+NKILIVTQT
Sbjct: 396 SLNQLCSSEEPEQEELDFLFDEEIEQI-GRKNTFTDWSDNDSDYEIDDQDLNKILIVTQT 454
Query: 650 PHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKFEPEYSQIK 703
P Y+++HPGGDRTG H SRAK+++ELAKVINDGL+YYEQDLW E+ E +++ IK
Sbjct: 455 PPYVKKHPGGDRTGTHMSRAKITSELAKVINDGLYYYEQDLWMEEDENKHTAIK 508
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 293 bits (749), Expect = 8e-79
Identities = 164/345 (47%), Positives = 221/345 (64%), Gaps = 22/345 (6%)
Query: 175 NWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQ-EKGEGSDSKESPKTKSDESGEEKN 233
NWPTP E+ + Q S Q +K +K+ +E+ EK SDSKE+ +TK + GE +
Sbjct: 3 NWPTPSELVNTGFQ--SVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS 60
Query: 234 GDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSES 293
DE Q Q+K+ NKHKWVPL +D+ +E+ SR + +P +
Sbjct: 61 EDE-AQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPE-----------ANK 108
Query: 294 ATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRG 353
T+ T +W+ + + DQD+ SSV+S+G G R SFRGRGRGRGRGRGRGRG
Sbjct: 109 PTHNNRRNDTRSWKRDREKRD---DQDDVSSVRSEG-GNIRGSFRGRGRGRGRGRGRGRG 164
Query: 354 GTRTHFDYQFGYRKF-DGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIE 412
R +FDY +GY++ + + P + ++ YY+D+ + ++Y V++ LLK+YIKRQIE
Sbjct: 165 NPRLNFDYSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIE 224
Query: 413 YYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDE 472
YYFSV+NLERDFFLR KMD GFLPI+LIA F RVQALTT+++LI ALKDS VEIVDE
Sbjct: 225 YYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDE 284
Query: 473 KVRRREEPEKWPL--PPIVDYSQTDFSQLLNCPEFVPRQHYQKET 515
K+R++ EPEKWP+ PP TDFSQL++CPEFVP Q + T
Sbjct: 285 KMRKKIEPEKWPIPGPPPRSVPPTDFSQLIDCPEFVPGQAFCSHT 329
>gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 100 bits (248), Expect = 1e-20
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 364 GYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERD 423
G +K + R + ++ YY+D+ + ++Y V++ LLK+ IKRQIE+YF+ +N ERD
Sbjct: 182 GNKKPQDRKEKRREELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERD 241
Query: 424 FFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREE 479
+FLR K LPI LIA F RVQALTT +LI ALKDS VEI++EK+R++ +
Sbjct: 242 YFLRGKRGEQDSLPIFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKKNQ 295
Score = 50.8 bits (120), Expect = 7e-06
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 14/190 (7%)
Query: 31 PAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQ--QERESPRPLQLPGAEGPA 88
PA +G P V AR RP +P E G+ E + GA G
Sbjct: 8 PAASHRGLEDPPAVTAERESLLARVNRPAEHQPLAEHEGKVAAREEKAKATTSEGARGEP 67
Query: 89 ISDGEEGGGEPGAG-GGAAGAAGAGRRDFVEAPP--PKVNPWTKNALPPVLTTVNGQSPP 145
S P A A AG ++ + P PK NPW K + T G+ P
Sbjct: 68 SSLVVPTRSMPQAAVPDTMEEAAAGPKEKRQPPLLLPKGNPWNKKPSQHLSPTTTGRPQP 127
Query: 146 E------HSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEI---AHKSVQPQSHKPQP 196
K+++A K++K +K DF D NW TP E+ ++SV Q +K
Sbjct: 128 ALETLEAEFGSLKIMKAGKLKKKKSNKASDFKDMENWRTPSELVNTGYQSVLSQGNKKPQ 187
Query: 197 TRKLPPKKDM 206
RK ++++
Sbjct: 188 DRKEKRREEL 197
>gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 100 bits (248), Expect = 1e-20
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 364 GYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERD 423
G +K + R + ++ YY+D+ + ++Y V++ LLK+ IKRQIE+YF+ +N ERD
Sbjct: 182 GNKKPQDRKEKRREELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERD 241
Query: 424 FFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREE 479
+FLR K LPI LIA F RVQALTT +LI ALKDS VEI++EK+R++ +
Sbjct: 242 YFLRGKRGEQDSLPIFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKKNQ 295
Score = 50.8 bits (120), Expect = 7e-06
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 14/190 (7%)
Query: 31 PAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQ--QERESPRPLQLPGAEGPA 88
PA +G P V AR RP +P E G+ E + GA G
Sbjct: 8 PAASHRGLEDPPAVTAERESLLARVNRPAEHQPLAEHEGKVAAREEKAKATTSEGARGEP 67
Query: 89 ISDGEEGGGEPGAG-GGAAGAAGAGRRDFVEAPP--PKVNPWTKNALPPVLTTVNGQSPP 145
S P A A AG ++ + P PK NPW K + T G+ P
Sbjct: 68 SSLVVPTRSMPQAAVPDTMEEAAAGPKEKRQPPLLLPKGNPWNKKPSQHLSPTTTGRPQP 127
Query: 146 E------HSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEI---AHKSVQPQSHKPQP 196
K+++A K++K +K DF D NW TP E+ ++SV Q +K
Sbjct: 128 ALETLEAEFGSLKIMKAGKLKKKKSNKASDFKDMENWRTPSELVNTGYQSVLSQGNKKPQ 187
Query: 197 TRKLPPKKDM 206
RK ++++
Sbjct: 188 DRKEKRREEL 197
>gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 100 bits (248), Expect = 1e-20
Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 364 GYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERD 423
G +K + R + ++ YY+D+ + ++Y V++ LLK+ IKRQIE+YF+ +N ERD
Sbjct: 182 GNKKPQDRKEKRREELNTSMMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERD 241
Query: 424 FFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREE 479
+FLR K LPI LIA F RVQALTT +LI ALKDS VEI++EK+R++ +
Sbjct: 242 YFLRGKRGEQDSLPIFLIAGFQRVQALTT--NLITEALKDSTEVEIMNEKMRKKNQ 295
Score = 49.7 bits (117), Expect = 2e-05
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 14/190 (7%)
Query: 31 PAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQ--QERESPRPLQLPGAEGPA 88
PA +G P V AR RP +P E G+ E + GA G
Sbjct: 8 PAASHRGLEDPPAVTAERESLLARVNRPAEHQPLAEHEGKVAAREEKAKATTSEGARGEP 67
Query: 89 ISDGEEGGGEPG-AGGGAAGAAGAGRRDFVEAPP--PKVNPWTKNALPPVLTTVNGQSPP 145
S P A A AG ++ + P PK NPW K + T G+ P
Sbjct: 68 SSLVVPTRSMPQVAVPDTMEEAAAGPKEKRQPPLLLPKGNPWNKKPSQHLSPTTTGRPQP 127
Query: 146 E------HSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEI---AHKSVQPQSHKPQP 196
K+++A K++K +K DF D NW TP E+ ++SV Q +K
Sbjct: 128 ALETLEAEFGSLKIMKAGKLKKKKSNKASDFKDMENWRTPSELVNTGYQSVLSQGNKKPQ 187
Query: 197 TRKLPPKKDM 206
RK ++++
Sbjct: 188 DRKEKRREEL 197
>gi|40353738 c-Mpl binding protein isoform a [Homo sapiens]
Length = 724
Score = 73.6 bits (179), Expect = 1e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 382 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 441
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 98 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 157
Query: 442 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 490
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 158 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 217
Query: 491 YSQTDFSQLLNCPEFV 506
+++ NCP+ +
Sbjct: 218 LFKSE-----NCPKVI 228
>gi|40353736 c-Mpl binding protein isoform c [Homo sapiens]
Length = 653
Score = 73.6 bits (179), Expect = 1e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 382 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 441
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 98 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 157
Query: 442 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 490
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 158 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 217
Query: 491 YSQTDFSQLLNCPEFV 506
+++ NCP+ +
Sbjct: 218 LFKSE-----NCPKVI 228
>gi|40353740 c-Mpl binding protein isoform b [Homo sapiens]
Length = 730
Score = 73.6 bits (179), Expect = 1e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 382 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 441
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 104 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 163
Query: 442 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 490
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 164 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 223
Query: 491 YSQTDFSQLLNCPEFV 506
+++ NCP+ +
Sbjct: 224 LFKSE-----NCPKVI 234
>gi|10835067 autoantigen La [Homo sapiens]
Length = 408
Score = 66.6 bits (161), Expect = 1e-10
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKMDAD-GFLPITLIASFHRVQALTTDISLIFAAL 461
L+ I QIEYYF NL RD FL+ ++ D G++P+ ++ F+R+ LTTD ++I AL
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEAL 72
Query: 462 KDSK--VVEIVDEKVRRREEPEKWPLPPIVDYSQTD 495
SK ++EI ++K + R P K PLP + D + D
Sbjct: 73 SKSKAELMEISEDKTKIRRSPSK-PLPEVTDEYKND 107
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 58.2 bits (139), Expect = 4e-08
Identities = 34/84 (40%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 400 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTTDISLI 457
+++L D I +Q++++F NL +D FLR +++ DG++ I+L+ SF++++ LTTD LI
Sbjct: 32 KQVLAD-IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLI 90
Query: 458 FAALKDSKVVEIVDEKVR-RREEP 480
AL+ S VVE+ E R RR++P
Sbjct: 91 ARALRSSAVVELDLEGTRIRRKKP 114
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 58.2 bits (139), Expect = 4e-08
Identities = 34/84 (40%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 400 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA--DGFLPITLIASFHRVQALTTDISLI 457
+++L D I +Q++++F NL +D FLR +++ DG++ I+L+ SF++++ LTTD LI
Sbjct: 32 KQVLAD-IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLI 90
Query: 458 FAALKDSKVVEIVDEKVR-RREEP 480
AL+ S VVE+ E R RR++P
Sbjct: 91 ARALRSSAVVELDLEGTRIRRKKP 114
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 57.0 bits (136), Expect = 1e-07
Identities = 81/312 (25%), Positives = 112/312 (35%), Gaps = 53/312 (16%)
Query: 19 EEHGGLVRKKPP-PAPEG----KGEPGPNDVRGGEPDGSARRPR--PPCAKPHKEGTGQQ 71
EE L+ P P+P+G +G P P G P +P+ PP KP +G Q
Sbjct: 26 EESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQ 83
Query: 72 ERESPRPLQLPG-AEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKN 130
+S P PG +GP G + G P G G G + + PPP P
Sbjct: 84 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-GNRPQGPPPPGKP---- 138
Query: 131 ALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQ 190
Q PP ++ R+ K + G G+ P P + PQ
Sbjct: 139 -----------QGPPPQGDKSRSPRSPPGKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQ 185
Query: 191 SHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKH 250
K +P PP K +G+ S S +SP K G +G
Sbjct: 186 GGK-KPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQ---------------GPPPQGGNQ 229
Query: 251 KWVPLQIDMKPEVPREKLASRPTRPP---EPRHIPANRGEIKGSESATYVPVAPPTPAWQ 307
P KP+ P + ++P PP +P+ PA G S+SA P P P Q
Sbjct: 230 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGG--SKSQSARSPPGKPQGPPQQ 287
Query: 308 ----PEIKPEPA 315
P+ P PA
Sbjct: 288 EGNNPQGPPPPA 299
Score = 49.7 bits (117), Expect = 2e-05
Identities = 65/265 (24%), Positives = 92/265 (34%), Gaps = 48/265 (18%)
Query: 27 KKPPPAPEGKGEPGPNDVRG---------GEPDGSARRPR--PPCAKPHKEGTGQQERES 75
+ PP P+G G N +G G P RP+ PP KP +G Q +S
Sbjct: 91 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKP--QGPPPQGDKS 148
Query: 76 PRPLQLPG-AEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPP 134
P PG +GP G + G P G G G + + PPP P
Sbjct: 149 RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKK-PQGPPPPGKP-------- 199
Query: 135 VLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQ-SHK 193
Q PP ++ ++ K + G G+ P P + PQ +K
Sbjct: 200 -------QGPPPQGDKSRSSQSPPGKPQGPPPQG--GNQPQGPPPPPGKPQGPPPQGGNK 250
Query: 194 PQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWV 253
PQ P K + G S S SP K +G +++GN +
Sbjct: 251 PQGPPP-PGKPQGPPAQGGSKSQSARSPPGK--------------PQGPPQQEGNNPQGP 295
Query: 254 PLQIDMKPEVPREKLASRPTRPPEP 278
P P+ P+ A +P PP P
Sbjct: 296 PPPAGGNPQQPQAPPAGQPQGPPRP 320
Score = 31.6 bits (70), Expect = 4.3
Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 2/145 (1%)
Query: 10 PGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHK-EGT 68
P G Q G + PP + + P G P +P+ P P K +G
Sbjct: 184 PQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 243
Query: 69 GQQERESPRPLQLPG-AEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPW 127
Q P+ PG +GP G + G G + PPP
Sbjct: 244 PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNP 303
Query: 128 TKNALPPVLTTVNGQSPPEHSAPAK 152
+ PP PP+ P++
Sbjct: 304 QQPQAPPAGQPQGPPRPPQGGRPSR 328
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 55.5 bits (132), Expect = 3e-07
Identities = 77/294 (26%), Positives = 103/294 (35%), Gaps = 65/294 (22%)
Query: 22 GGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQL 81
GG + PPP P GK E GP G + G RP P +P +G Q + PRP +
Sbjct: 64 GGNQSQGPPPRP-GKPE-GPPPQGGNQSQGPPPRPGKPEGQP-PQGGNQSQGPPPRPGK- 119
Query: 82 PGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNG 141
EGP G + G P G G G + PPP+ K PP
Sbjct: 120 --PEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS-QGPPPRPG---KPEGPPPQGGNQS 173
Query: 142 QSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLP 201
Q PP H P + +G P G + P+ KP+ P
Sbjct: 174 QGPPPH-----------PGKPEGP-----------PPQGGNQSQGPPPRPGKPEG----P 207
Query: 202 PKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKP 261
P + G+ S+ P G +GG K +G P KP
Sbjct: 208 PPQG--------GNQSQGPPPRPGKPEGPPS-------QGGNKPQG------PPPHPGKP 246
Query: 262 EVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAP-PTPAWQPEIKPEP 314
+ P + ++P RPP P G +G P P P PA +P+ P P
Sbjct: 247 QGPPPQEGNKPQRPPPP-------GRPQGPPPPGGNPQQPLPPPAGKPQGPPPP 293
Score = 34.7 bits (78), Expect = 0.51
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 22 GGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQL 81
GG + PPP P GK E GP G +P G P P P +EG Q P Q
Sbjct: 211 GGNQSQGPPPRP-GKPE-GPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQG 268
Query: 82 PGAEG-------PAISDGEEGGGEPGAGG 103
P G P + +G P GG
Sbjct: 269 PPPPGGNPQQPLPPPAGKPQGPPPPPQGG 297
>gi|57634536 La ribonucleoprotein domain family, member 4B [Homo
sapiens]
Length = 738
Score = 55.1 bits (131), Expect = 4e-07
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 400 QELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFA 459
QE ++ +K+ +E+ S +NL D +L +MD+D ++PIT +A+ ++ L+TD+ LI
Sbjct: 153 QEDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVE 212
Query: 460 ALKDSKVVEIVDEK 473
L+ +V+ VDEK
Sbjct: 213 VLRSLPLVQ-VDEK 225
>gi|37537710 La ribonucleoprotein domain family, member 6 isoform 1
[Homo sapiens]
Length = 491
Score = 53.5 bits (127), Expect = 1e-06
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 399 DQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDAD--GFLPITLIASFHRVQALTTDISL 456
D+EL+K + QIE+YFS +NLE+D FL + + + G++ + L+ SF +V+ LT D
Sbjct: 89 DEELIKKLVD-QIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 457 IFAALKDSKVVEIVDE--KVRR 476
ALK S V+E+ ++ KVRR
Sbjct: 148 TAHALKYSVVLELNEDHRKVRR 169
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.1 bits (126), Expect = 1e-06
Identities = 84/316 (26%), Positives = 102/316 (32%), Gaps = 54/316 (17%)
Query: 9 LPGGATLLQAEEHGGLVRKKPPPAPEGK----GEPGPNDVRGGEPDGSARRPRPPCAKPH 64
LPG L + G K PP P G+ G PGP RG P+ +P
Sbjct: 534 LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPG 593
Query: 65 KEGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAG----AGRRDFVEAP 120
K G ER P P PGA GPA DGE G P G AG G AG F P
Sbjct: 594 KAG----ERGVPGP---PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLP 646
Query: 121 PPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPG 180
P A PP P E P + A P +G + PG
Sbjct: 647 GP--------AGPP----GEAGKPGEQGVPGD-LGAPGPSGARGER----------GFPG 683
Query: 181 EIAHKSVQ--PQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDC 238
E + VQ P P+ P K G+ + GE
Sbjct: 684 E---RGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERG------ 734
Query: 239 QRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVP 298
G KG++ P D P + + P PP P P ++G ES P
Sbjct: 735 AAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKG-----ESGPSGP 789
Query: 299 VAPPTPAWQPEIKPEP 314
P P + EP
Sbjct: 790 AGPTGARGAPGDRGEP 805
Score = 50.4 bits (119), Expect = 9e-06
Identities = 92/380 (24%), Positives = 123/380 (32%), Gaps = 46/380 (12%)
Query: 23 GLVRKKPPPAPEG----KGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRP 78
GL PP P G KGE GP+ G P G+ P +R P P
Sbjct: 764 GLTGPIGPPGPAGAPGDKGESGPSGPAG--PTGARGAPG--------------DRGEPGP 807
Query: 79 LQLPGAEGPAISDGEEGG-GEPGAGGGAAGAAGAGRRDFVEAPPPKVN---PWTKNAL-- 132
G GP +DG+ G GEPG G A G P P N P K A
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGS 867
Query: 133 --PPVLTTVNGQS----PPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEI---- 182
PP T G + PP S A P ++G K G G+ PGE+
Sbjct: 868 AGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGK-GPRGETGPAGRPGEVGPPG 926
Query: 183 ----AHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDC 238
A + P + P P + + Q G + + G +
Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 986
Query: 239 QRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVP 298
G ++G P + P + A P P +G+ +G P
Sbjct: 987 PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGD-RGETGPAGPP 1045
Query: 299 VAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTH 358
AP P + P D+ ET G G RG +G +G T
Sbjct: 1046 GAPGAPGAPGPVGPAGKSGDRGETGPA---GPAGPVGPVGARGPAGPQGPRGDKGETGEQ 1102
Query: 359 FDYQF-GYRKFDGVEGPRTP 377
D G+R F G++GP P
Sbjct: 1103 GDRGIKGHRGFSGLQGPPGP 1122
Score = 43.5 bits (101), Expect = 0.001
Identities = 80/323 (24%), Positives = 101/323 (31%), Gaps = 73/323 (22%)
Query: 23 GLVRKKPPPAPEGK-------------GEPGPNDVRG-----GEPDGSARRPRP----PC 60
G V PP P G+ G PGP + G G P R P P
Sbjct: 920 GEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPS 979
Query: 61 AKPHKEGTG--QQERESPRPLQLPGAEGPAISDGEEGG----------GEPGAGG--GAA 106
+P K+G ER P P+ PG GP G EG G PGA G G
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGET 1039
Query: 107 GAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSA-PAKVVRAAVPKQRKGS 165
G AG P V P K+ G++ P A P V A P +G
Sbjct: 1040 GPAGPPGAPGAPGAPGPVGPAGKSG-------DRGETGPAGPAGPVGPVGARGPAGPQGP 1092
Query: 166 KVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKS 225
+ GD G+ G H+ P P GS ++ P S
Sbjct: 1093 R-GDKGETGEQGDRGIKGHRGFSGLQGPPGP----------------PGSPGEQGPSGAS 1135
Query: 226 DESGEEKNGDEDCQRG--GQKKKGNKHKWVPLQIDMKPEVPREKLA-SRPTRPPEPRHIP 282
+G RG G K L + P PR + + P PP P P
Sbjct: 1136 GPAG---------PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPP 1186
Query: 283 ANRGEIKGSESATYVPVAPPTPA 305
G +++P P A
Sbjct: 1187 GPPGPPSAGFDFSFLPQPPQEKA 1209
Score = 39.7 bits (91), Expect = 0.016
Identities = 93/371 (25%), Positives = 121/371 (32%), Gaps = 77/371 (20%)
Query: 29 PPPAPEGKGEPGPNDVRGGEPDGSARR-PRPPCAKPHKEGTGQQERESPRPLQLPGAEGP 87
PP AP +G GP GEP S PR P P K G + E+ +P + PG GP
Sbjct: 192 PPGAPGPQGFQGPPG-EPGEPGASGPMGPRGPPGPPGKNG---DDGEAGKPGR-PGERGP 246
Query: 88 AISDGEEG----GGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQS 143
G G G PG G + G + PK P S
Sbjct: 247 PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEP---------------GS 291
Query: 144 PPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPP- 202
P E+ AP ++ +P +R + G G A G + + P PT P
Sbjct: 292 PGENGAPGQMGPRGLPGER--GRPGAPGPA------GARGNDGATGAAGPPGPTGPAGPP 343
Query: 203 -------------KKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNK 249
+ + E +G + P + +G N D Q G + G
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403
Query: 250 HKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGE--IKGSESATYVPVAP-PTPAW 306
I P P + S P P P N GE GS+ T P P
Sbjct: 404 ------GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ 457
Query: 307 QPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYR 366
P P PA +G GAR G G RG G+R G+
Sbjct: 458 GP---PGPA----------GEEGKRGARGEPGPTGLPGPPGE-RGGPGSR-------GFP 496
Query: 367 KFDGVEGPRTP 377
DGV GP+ P
Sbjct: 497 GADGVAGPKGP 507
Score = 39.3 bits (90), Expect = 0.021
Identities = 81/323 (25%), Positives = 104/323 (32%), Gaps = 66/323 (20%)
Query: 30 PPAPEG----------------KGEPGPNDVRG-----GEPDGSARRPRP-PCAKPHKEG 67
PP P+G KGEPGP V+G GE R P P P G
Sbjct: 426 PPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPG 485
Query: 68 TGQQERESPRPLQLPGAEGPAISDGEEG-GGEPGAGG--------GAAGAAGAGRRDFVE 118
ER P PGA+G A G G G PG G G G AG +
Sbjct: 486 ----ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT 541
Query: 119 APPPKVNPWTKNALPPVLTTVNGQ----SPPEHSAPAKVVRAAVPKQRKG--SKVGDFGD 172
P P K PP +G+ PP A V+ PK G K G+ G
Sbjct: 542 GSPGSPGPDGKTG-PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERG- 599
Query: 173 AINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKG-----EGSDSKESPKTKSDE 227
+ P PG + ++ P P + EQ +G P ++ +
Sbjct: 600 -VPGP-PGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGK 657
Query: 228 SGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPR---HIPAN 284
GE+ + G +G + P E+ P P PR P N
Sbjct: 658 PGEQGVPGDLGAPGPSGARGER------------GFPGERGVQGPPGPAGPRGANGAPGN 705
Query: 285 RGEIKGSESATYVPVAPPTPAWQ 307
G KG A P + P Q
Sbjct: 706 DG-AKGDAGAPGAPGSQGAPGLQ 727
Score = 38.9 bits (89), Expect = 0.027
Identities = 37/105 (35%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 10 PGGATLLQAEEHGGLVRKKPPPAPEGK-GEPGPNDVRGGEPDGSARRPRPPCAKPHKEGT 68
PG A + G PP P G G PG G + + + PR EG
Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRG------SEGP 366
Query: 69 GQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGG--GAAGAAGA 111
Q R P P GA GPA + G +G +PGA G GA G AGA
Sbjct: 367 -QGVRGEPGPPGPAGAAGPAGNPGADG--QPGAKGANGAPGIAGA 408
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 52.0 bits (123), Expect = 3e-06
Identities = 81/298 (27%), Positives = 108/298 (36%), Gaps = 45/298 (15%)
Query: 16 LQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCA----KPHKEGTGQQ 71
L E +R +PP PEG PGP+ GG+ DG A P PCA K + +
Sbjct: 341 LAEPESAPTLRVEPPSPPEGPPNPGPD---GGKQDGEA-PPAGPCAPATDKAEEVVCAPE 396
Query: 72 ERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNA 131
+ SP P +P EG P AA + RD E PK T
Sbjct: 397 DVASPFPTAIP-----------EGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPV 445
Query: 132 LPPVLTTVNGQSP-PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEI-----AHK 185
LP G +P PE A + R A + + A + P P A
Sbjct: 446 LPDEEKGPPGPAPEPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAA 505
Query: 186 SVQPQSHKPQPTRKLPPKKDMKEQEKGEGS-----DSKESPKTKSDE---SGEEKNGDE- 236
S P + P + PP E G GS + E PK + E +G E+ E
Sbjct: 506 SEGPAASPPLAAAESPP------VEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPER 559
Query: 237 DCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESA 294
+RGG + +G K + PR + SRP R A G + SE+A
Sbjct: 560 KAERGGAELRGAK----KFSVSSCRARPRPGV-SRPLERASGRLPLARSGPVWRSEAA 612
Score = 32.0 bits (71), Expect = 3.3
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 718 EQFDTLTPEPPVDPNQEVPPGPPRFQQ----------VPTDALANKLFGAPEPSTIARSL 767
E TL EPP P PGP +Q P A ++ APE +A
Sbjct: 345 ESAPTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPE--DVASPF 402
Query: 768 PTTVPESPNYRNTRTP-RTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRK 819
PT +PE P T P +D + S V KE +P + K
Sbjct: 403 PTAIPEGDTTPPETDPAATSEAPSARDGPERS----VPKEAEPTPPVLPDEEK 451
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 50.8 bits (120), Expect = 7e-06
Identities = 62/231 (26%), Positives = 85/231 (36%), Gaps = 54/231 (23%)
Query: 7 PLLPGGATLLQAEEHGGLVRKKPPPAPEGKGEPG---PNDVRGGEPDGSARRP--RPPCA 61
P+ P G T A+ G KPP G +P P +P G + P +P A
Sbjct: 352 PVQPPGTTKPPAQPLGPA---KPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPA 408
Query: 62 KPHKEGTGQQERESPRPL-QLPGAEGPAISDG--EEGGGEPGAGGGAAGAAGAGRRDFVE 118
KP + G +P+PL Q PG + PA + G + +PG G A AG G+ +
Sbjct: 409 KPPTQQVG-----TPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQ 463
Query: 119 APPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPT 178
P K PP + PP+ PAK P Q+
Sbjct: 464 TGPTK---------PPSQLPGPAKPPPQQPGPAKP-----PPQQ---------------- 493
Query: 179 PGEIAHKSVQPQSHKPQPTRKLPPKKDMKE--------QEKGEGSDSKESP 221
PG S QP S KP P + P K ++ Q+ G S + P
Sbjct: 494 PGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQP 544
Score = 43.5 bits (101), Expect = 0.001
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 40/225 (17%)
Query: 111 AGRRDFVEAPPPKV------------NPWTKNALPPVLTTVNGQSPP-EHSAPAKVVRAA 157
A ++D +AP PK +P K PP +++ +PP E S P++ +A
Sbjct: 689 APKQDLSKAPEPKKPPPLVKQPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAP 748
Query: 158 V----PKQRKGSK-VGDFGDAINWPTPGEIAHKSVQPQSHKP----------QPTRKLPP 202
V PKQ K K D + + T +I VQ Q+ + +P++ PP
Sbjct: 749 VADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSKVQSQAEEKTTPPLKTDSAKPSQSFPP 808
Query: 203 KKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPE 262
EK DSK P+ SD G + GQK+ P+Q +P+
Sbjct: 809 TG-----EKVSPFDSKAIPRPASDSKIISHPGPSS-ESKGQKQVD------PVQKKEEPK 856
Query: 263 VPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQ 307
+ K++ +P P P+ P G + P P P Q
Sbjct: 857 KAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQ 901
Score = 34.3 bits (77), Expect = 0.66
Identities = 64/302 (21%), Positives = 101/302 (33%), Gaps = 31/302 (10%)
Query: 28 KPPPAPEGKGEPGPNDVRGGEPDG--------SARRPRPPCAKPHKEGTGQQERESPRPL 79
KPPP G +P P +P SA++P P + + S +PL
Sbjct: 508 KPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPL 567
Query: 80 QLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTV 139
Q P A P G + + P K N T + ++
Sbjct: 568 QPPTVSPSAKQ-------PPSQGLPKTICPLCNTTELLLHVPEKANFNTCTECQTTVCSL 620
Query: 140 NGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTP----GEIAHKSVQPQSHKPQ 195
G +P H K + Q K + GD + P P + S +S PQ
Sbjct: 621 CGFNPNPHLTEVK-EWLCLNCQMKRALGGDLAPVPSSPQPKLKTAPVTTTSAVSKS-SPQ 678
Query: 196 PTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPL 255
P + P K +Q+ + + K+ P + +G + + + K P
Sbjct: 679 PQQTSPKKDAAPKQDLSKAPEPKKPPPLVKQPT---LHGSPSAKAKQPPEADSLSKPAP- 734
Query: 256 QIDMKPEVPRE--KLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAW-QPEIKP 312
+P VP E K +P +P+ + ++ S SAT P P + Q E K
Sbjct: 735 --PKEPSVPSEQDKAPVADDKPKQPKMVKPTT-DLVSSSSATTKPDIPSSKVQSQAEEKT 791
Query: 313 EP 314
P
Sbjct: 792 TP 793
Score = 34.3 bits (77), Expect = 0.66
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 37/183 (20%)
Query: 728 PVDPNQEVPPGPPRFQQVPT---------DALANKLFGAPEPSTIARSLPTTVPESPNYR 778
P + + P PP+ VP+ D P ++ S TT P+ P+ +
Sbjct: 723 PPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSK 782
Query: 779 NTRTPRTPRTPQLK-DSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMD 837
TP LK DS++ S+ +P E + K R +S+ + SH G +
Sbjct: 783 VQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVS---PFDSKAIPRPASDSKIISHPGPSSE 839
Query: 838 SR----------EHRPRTASISSSPSEGT--------------PTVGSYGCTPQSLPKFQ 873
S+ + P+ A SP PT G TPQ PK Q
Sbjct: 840 SKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQ 899
Query: 874 HPS 876
S
Sbjct: 900 EQS 902
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 50.8 bits (120), Expect = 7e-06
Identities = 62/231 (26%), Positives = 85/231 (36%), Gaps = 54/231 (23%)
Query: 7 PLLPGGATLLQAEEHGGLVRKKPPPAPEGKGEPG---PNDVRGGEPDGSARRP--RPPCA 61
P+ P G T A+ G KPP G +P P +P G + P +P A
Sbjct: 352 PVQPPGTTKPPAQPLGPA---KPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPA 408
Query: 62 KPHKEGTGQQERESPRPL-QLPGAEGPAISDG--EEGGGEPGAGGGAAGAAGAGRRDFVE 118
KP + G +P+PL Q PG + PA + G + +PG G A AG G+ +
Sbjct: 409 KPPTQQVG-----TPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQ 463
Query: 119 APPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPT 178
P K PP + PP+ PAK P Q+
Sbjct: 464 TGPTK---------PPSQLPGPAKPPPQQPGPAKP-----PPQQ---------------- 493
Query: 179 PGEIAHKSVQPQSHKPQPTRKLPPKKDMKE--------QEKGEGSDSKESP 221
PG S QP S KP P + P K ++ Q+ G S + P
Sbjct: 494 PGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQP 544
Score = 43.5 bits (101), Expect = 0.001
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 40/225 (17%)
Query: 111 AGRRDFVEAPPPKV------------NPWTKNALPPVLTTVNGQSPP-EHSAPAKVVRAA 157
A ++D +AP PK +P K PP +++ +PP E S P++ +A
Sbjct: 689 APKQDLSKAPEPKKPPPLVKQPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAP 748
Query: 158 V----PKQRKGSK-VGDFGDAINWPTPGEIAHKSVQPQSHKP----------QPTRKLPP 202
V PKQ K K D + + T +I VQ Q+ + +P++ PP
Sbjct: 749 VADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSKVQSQAEEKTTPPLKTDSAKPSQSFPP 808
Query: 203 KKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPE 262
EK DSK P+ SD G + GQK+ P+Q +P+
Sbjct: 809 TG-----EKVSPFDSKAIPRPASDSKIISHPGPSS-ESKGQKQVD------PVQKKEEPK 856
Query: 263 VPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQ 307
+ K++ +P P P+ P G + P P P Q
Sbjct: 857 KAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQ 901
Score = 34.3 bits (77), Expect = 0.66
Identities = 64/302 (21%), Positives = 101/302 (33%), Gaps = 31/302 (10%)
Query: 28 KPPPAPEGKGEPGPNDVRGGEPDG--------SARRPRPPCAKPHKEGTGQQERESPRPL 79
KPPP G +P P +P SA++P P + + S +PL
Sbjct: 508 KPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPL 567
Query: 80 QLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTV 139
Q P A P G + + P K N T + ++
Sbjct: 568 QPPTVSPSAKQ-------PPSQGLPKTICPLCNTTELLLHVPEKANFNTCTECQTTVCSL 620
Query: 140 NGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTP----GEIAHKSVQPQSHKPQ 195
G +P H K + Q K + GD + P P + S +S PQ
Sbjct: 621 CGFNPNPHLTEVK-EWLCLNCQMKRALGGDLAPVPSSPQPKLKTAPVTTTSAVSKS-SPQ 678
Query: 196 PTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPL 255
P + P K +Q+ + + K+ P + +G + + + K P
Sbjct: 679 PQQTSPKKDAAPKQDLSKAPEPKKPPPLVKQPT---LHGSPSAKAKQPPEADSLSKPAP- 734
Query: 256 QIDMKPEVPRE--KLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAW-QPEIKP 312
+P VP E K +P +P+ + ++ S SAT P P + Q E K
Sbjct: 735 --PKEPSVPSEQDKAPVADDKPKQPKMVKPTT-DLVSSSSATTKPDIPSSKVQSQAEEKT 791
Query: 313 EP 314
P
Sbjct: 792 TP 793
Score = 34.3 bits (77), Expect = 0.66
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 37/183 (20%)
Query: 728 PVDPNQEVPPGPPRFQQVPT---------DALANKLFGAPEPSTIARSLPTTVPESPNYR 778
P + + P PP+ VP+ D P ++ S TT P+ P+ +
Sbjct: 723 PPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSK 782
Query: 779 NTRTPRTPRTPQLK-DSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMD 837
TP LK DS++ S+ +P E + K R +S+ + SH G +
Sbjct: 783 VQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVS---PFDSKAIPRPASDSKIISHPGPSSE 839
Query: 838 SR----------EHRPRTASISSSPSEGT--------------PTVGSYGCTPQSLPKFQ 873
S+ + P+ A SP PT G TPQ PK Q
Sbjct: 840 SKGQKQVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQ 899
Query: 874 HPS 876
S
Sbjct: 900 EQS 902
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 50.1 bits (118), Expect = 1e-05
Identities = 48/179 (26%), Positives = 63/179 (35%), Gaps = 22/179 (12%)
Query: 55 RPRPPCAKPHKEGTGQQERESPRPLQLPGAEG------PAISDGEEGGGEPGAGGGAAGA 108
+P PP P ++ QQ+ P P L G PA+S G G PG G G G
Sbjct: 4 QPPPP---PPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGL 60
Query: 109 AGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVR-AAVPKQRKGSKV 167
A + PPP PP T PP PA A+ P G
Sbjct: 61 GAAAAALLLHPPPP----------PPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAA 110
Query: 168 GDFGDAINWPTPGEIAHKS-VQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKS 225
G G A PTP +A S P H + + + + D +E+P +S
Sbjct: 111 GP-GPAGGAPTPALVAGSSAAAPFPHGDSALNEQEKELQRRLKRLYPAVDEQETPLPRS 168
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 48.9 bits (115), Expect = 3e-05
Identities = 52/204 (25%), Positives = 74/204 (36%), Gaps = 37/204 (18%)
Query: 29 PPPAPEGKGEPGPNDV-----RGGEPDGSA----------RRPRPPCAKPHKEGTGQQER 73
P P GK P P RGG G A RR R + P + G +
Sbjct: 354 PTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRP 413
Query: 74 ESPRPLQLPGAEGPAISDGEEGGGEPGAG---GGAAGAAGAGRRDFVEAPPPKVNPWTKN 130
PR + + SD G G PG G G G G G+R + PP+ P + +
Sbjct: 414 APPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKR--AKERPPRARPASTS 471
Query: 131 ALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQ 190
P G PE + + R+ P R S + +P + +S + +
Sbjct: 472 PSPGAHGRRGG---PEGKSSS---RSPGPHPRSWS---------SSRSPSKSRSRSAEKR 516
Query: 191 SHKPQPTRKLPPKKDMKEQEKGEG 214
H P+R PKK + + GEG
Sbjct: 517 PH--SPSRSPSPKKPLSRDKDGEG 538
Score = 41.2 bits (95), Expect = 0.005
Identities = 42/180 (23%), Positives = 65/180 (36%), Gaps = 34/180 (18%)
Query: 178 TPGEIAHKSVQPQSHKPQPTR-----KLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEK 232
+PG +H+ SH P + + P + K +++G + S+ S ++S
Sbjct: 247 SPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGS 306
Query: 233 NGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSE 292
+ GG ++ H P P+ P P PR ++
Sbjct: 307 GWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSS---------PSPR--------VRDKA 349
Query: 293 SATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGR 352
+A A PTP + + P P S+ S G GG A GR R R R R R R
Sbjct: 350 AA-----AAPTPPARGKESPSP-------RSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Score = 37.0 bits (84), Expect = 0.10
Identities = 70/309 (22%), Positives = 103/309 (33%), Gaps = 26/309 (8%)
Query: 53 ARRPRPPCAKPHKEG--TGQQERESPRPLQLPGAEGPAISDGEEGGGE-PGAGGGAAGAA 109
+R P K EG TG Q R G G G G+ GA GG G+A
Sbjct: 272 SRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSA 331
Query: 110 GAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSK-VG 168
+ D +P P+V A P +PP + R+A Q +G + G
Sbjct: 332 HSPP-DKPSSPSPRVRDKAAAAAP---------TPPARGKESPSPRSAPSSQGRGGRAAG 381
Query: 169 DFGDAINWPTPGEIAHKSVQ-PQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDE 227
G + S P+ + R PP+ + + S S + +
Sbjct: 382 GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGR-GAPG 440
Query: 228 SGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEV------PREKLASRPTRPPEPRHI 281
G E + G++ K + P P P K +SR + P PR
Sbjct: 441 PGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSR-SPGPHPRSW 499
Query: 282 PANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRG 341
++R K + P +P+ P K +P D+D + A RA R R
Sbjct: 500 SSSRSPSKSRSRS--AEKRPHSPSRSPSPK-KPLSRDKDGEGRARHSEAEATRARRRSRS 556
Query: 342 RGRGRGRGR 350
R R R
Sbjct: 557 YSPIRKRRR 565
Score = 35.4 bits (80), Expect = 0.30
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 18/143 (12%)
Query: 26 RKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKE----GTGQQERESPRPLQL 81
R++P PAP + R GS R P +P E G G++ +E P P
Sbjct: 408 RRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERP-PRAR 466
Query: 82 PGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNG 141
P + P+ PGA G G G + +P P W+ + P + +
Sbjct: 467 PASTSPS----------PGAHGRRGGPEG---KSSSRSPGPHPRSWSSSRSPSKSRSRSA 513
Query: 142 QSPPEHSAPAKVVRAAVPKQRKG 164
+ P + + + + + + G
Sbjct: 514 EKRPHSPSRSPSPKKPLSRDKDG 536
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 48.9 bits (115), Expect = 3e-05
Identities = 61/289 (21%), Positives = 96/289 (33%), Gaps = 33/289 (11%)
Query: 29 PPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQLPGAEGPA 88
PP P+G G N +G P G + P P K + + + P P +GP
Sbjct: 74 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 133
Query: 89 ISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHS 148
G+ G P G G G+ + PPP+ + ++++ P Q PP
Sbjct: 134 PPPGKPQGPPPQGGNKPQGPPPPGK---PQGPPPQGDNKSRSSRSP---PGKPQGPPPQG 187
Query: 149 APAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKE 208
P + +G P PG+ + PQ + + PP K
Sbjct: 188 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK--PQGPPPQGDNKSQSARSPPGKPQGP 245
Query: 209 QEKGEGSDSKESPKTKSDESGEEKNGDEDCQ-------------RGGQKKKGNKHKWVPL 255
+G G+ + P G G Q +GG K + ++
Sbjct: 246 PPQG-GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSP---- 300
Query: 256 QIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTP 304
KP+ P + ++P PP P P G++ P PP P
Sbjct: 301 --PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK-----PQGPPPP 342
Score = 47.4 bits (111), Expect = 8e-05
Identities = 70/304 (23%), Positives = 99/304 (32%), Gaps = 53/304 (17%)
Query: 29 PPPAPEGKGEPGPNDVRG---------GEPDGSARRPR--PPCAKPHKEGTGQQERESPR 77
PP P+G G N +G G P +P+ PP KP +G Q +S
Sbjct: 53 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGDKSRS 110
Query: 78 PLQLPG-AEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVL 136
P PG +GP G + G P G G G + PPP P
Sbjct: 111 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKP---------- 159
Query: 137 TTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQP 196
Q PP + P + +G P P QPQ P P
Sbjct: 160 -----QGPPPQGDNKSRSSRSPPGKPQG------------PPP----QGGNQPQGPPPPP 198
Query: 197 TRKLPPKKDMKEQEKGEGSDSK-ESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPL 255
+ P + +G K + P + D + +G + GN+ + P
Sbjct: 199 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPP- 257
Query: 256 QIDMKPEVPREKLASRPTRPPEPRH----IPANRGEIKGSESATYVPVAPPTPAW-QPEI 310
KP+ P + ++P PP P P + + S S P PP QP+
Sbjct: 258 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQG 317
Query: 311 KPEP 314
P P
Sbjct: 318 PPPP 321
Score = 46.6 bits (109), Expect = 1e-04
Identities = 58/253 (22%), Positives = 81/253 (32%), Gaps = 22/253 (8%)
Query: 27 KKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQLPGAEG 86
+ PP P+G G G +P G P P P + G Q P Q P +G
Sbjct: 174 RSPPGKPQGPPPQG-----GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Query: 87 PAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPE 146
+ + PG G G + + PPP P K PP Q PP
Sbjct: 229 D--NKSQSARSPPGKPQGPPPQGG----NQPQGPPP---PPGKPQGPPPQGGNKPQGPPP 279
Query: 147 HSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDM 206
P P + GSK P G QPQ P P + P
Sbjct: 280 PGKPQG------PPPQGGSKSRSSRSPPGKP-QGPPPQGGNQPQGPPPPPGKPQGPPPQG 332
Query: 207 KEQEKGEGSDSK-ESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPR 265
+ +G K + P + +G +++GN + P P+ P+
Sbjct: 333 GNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ 392
Query: 266 EKLASRPTRPPEP 278
A +P PP P
Sbjct: 393 APPAGQPQGPPRP 405
Score = 44.3 bits (103), Expect = 6e-04
Identities = 62/261 (23%), Positives = 85/261 (32%), Gaps = 36/261 (13%)
Query: 22 GGLVRKKPPPAPEGKGEP-GPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQ 80
GG + PPP P G+P GP G +P G +P P + Q R P Q
Sbjct: 187 GGNQPQGPPPPP---GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQ 243
Query: 81 LPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVN 140
P +G G + G P G G G + PPP P
Sbjct: 244 GPPPQG-----GNQPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKPQGP----------- 286
Query: 141 GQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQ----P 196
PP+ + ++ R+ K + G P PG+ PQ PQ P
Sbjct: 287 ---PPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGK-------PQGPPPQGGNKP 336
Query: 197 TRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQ 256
PP K +G GS S+ + G + + Q GN +
Sbjct: 337 QGPPPPGKPQGPPPQG-GSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP 395
Query: 257 IDMKPEVPREKLASRPTRPPE 277
PR RP+RPP+
Sbjct: 396 AGQPQGPPRPPQGGRPSRPPQ 416
Score = 42.0 bits (97), Expect = 0.003
Identities = 77/312 (24%), Positives = 104/312 (33%), Gaps = 62/312 (19%)
Query: 27 KKPPPAPEGKGEPGPNDVRG---------GEPDGSARRPR--PPCAKPHKEGTGQQERES 75
+ PP P+G G N +G G P +P+ PP KP +G Q
Sbjct: 112 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGDNK 169
Query: 76 PRPLQLPGA--EGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALP 133
R + P +GP G + G P G G G + PPP P
Sbjct: 170 SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKP------- 221
Query: 134 PVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHK 193
PP+ ++ R+ K + G P PG +PQ
Sbjct: 222 -------QGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPG-------KPQGPP 267
Query: 194 PQ----PTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNK 249
PQ P PP K +G GS S+ S G +GG + +G
Sbjct: 268 PQGGNKPQGPPPPGKPQGPPPQG-GSKSRSSRSPPGKPQGPP-------PQGGNQPQG-- 317
Query: 250 HKWVPLQIDMKPEVPREKLASRPTRPPEP--RHIPANRGEIKGSESATYVPVAPPTPAWQ 307
P KP+ P + ++P PP P P +G K S SA P P P Q
Sbjct: 318 ----PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSK-SRSARSPPGKPQGPPQQ 372
Query: 308 ----PEIKPEPA 315
P+ P PA
Sbjct: 373 EGNNPQGPPPPA 384
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 48.9 bits (115), Expect = 3e-05
Identities = 71/311 (22%), Positives = 108/311 (34%), Gaps = 35/311 (11%)
Query: 26 RKKPPPAPEGKGEPGPNDVRGGEPDGSARR--PRPPCAKPHKEGTGQQERESPRPLQLPG 83
R PP P P P RR P PP + ++R SP +
Sbjct: 595 RYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSP----VTK 650
Query: 84 AEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVN-PWTKNALPPVLTTVNG- 141
P++S G P A + +R +P P+ P T ++ PPV +
Sbjct: 651 RRSPSLSSKHRKGSSPSRSTREARSPQPNKR---HSPSPRPRAPQTSSSPPPVRRGASSS 707
Query: 142 ----QSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAH-KSVQPQSHKPQP 196
QSP + P + V + P+ +K K P+P + S + S P+P
Sbjct: 708 PQRRQSPSPSTRPIRRV-SRTPEPKKIKKAAS-------PSPQSVRRVSSSRSVSGSPEP 759
Query: 197 TRKLPPKKDMKEQEKGEGSDSKES---PKTKSDESGEEKNGDEDCQRGGQKKK---GNKH 250
K PP Q + ++ + K KS + D + GG+KKK KH
Sbjct: 760 AAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKH 819
Query: 251 KWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEI 310
K K + +A+ P I A + E PVA P P + E
Sbjct: 820 KKDKKHKKHKKHKKEKAVAAAAAAAVTPAAIAAATTTLAQEE-----PVAAPEPKKETES 874
Query: 311 KPEPAWHDQDE 321
+ E D ++
Sbjct: 875 EAEDNLDDLEK 885
Score = 39.3 bits (90), Expect = 0.021
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 28/147 (19%)
Query: 724 TPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNY------ 777
+P PP PP PP+ + P+ ++ +P P RS P T SP+
Sbjct: 605 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK--QRSSPVTKRRSPSLSSKHRK 662
Query: 778 -----RNTRTPRTPRTPQLKDSS------QTSRFYPVVKEGRTLDAKMPRKRKTRHSSNP 826
R+TR R+P+ + S QTS P V+ G + P++R++ S
Sbjct: 663 GSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGA---SSSPQRRQSPSPSTR 719
Query: 827 PLESHVGWVMDSREHRPRTASISSSPS 853
P+ SR P+ ++SPS
Sbjct: 720 PIR------RVSRTPEPKKIKKAASPS 740
Score = 38.9 bits (89), Expect = 0.027
Identities = 74/383 (19%), Positives = 127/383 (33%), Gaps = 63/383 (16%)
Query: 10 PGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTG 69
PG + + G R+ P PAP+ P ++ E D + + ++
Sbjct: 432 PGRTSGKVTKHKGTEKRESPSPAPK----PRKVELSESEEDKGGKMAAADSVQQRRQYRR 487
Query: 70 QQERESPRPLQLPGAEGPA-----ISDGEEG---------GGEPGAGGGAAGAAGAGRRD 115
Q ++ S +E + +GE G P + GRR
Sbjct: 488 QNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRR 547
Query: 116 FVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRK----------GS 165
+PPP + + PP PP P+ R P R+ S
Sbjct: 548 RSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPS 607
Query: 166 KVGDFGDAINWPTPGEIAHKSVQPQ---SHKPQPTRKLPP-----KKDMKEQEKGEGSDS 217
A P P A S P+ SH P P ++ P + + + S S
Sbjct: 608 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPS 667
Query: 218 KESPKTKSDE------------SGEEKNGDEDCQRGG----QKKKGNKHKWVPL-QIDMK 260
+ + + +S + + + + +RG Q+++ P+ ++
Sbjct: 668 RSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRT 727
Query: 261 PEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPA--------WQPEIKP 312
PE + K A+ P+ P R + ++R E A P APP+P W P +
Sbjct: 728 PEPKKIKKAASPS-PQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPV 786
Query: 313 EPAWHDQDETSSVK-SDGAGGAR 334
+ A S + SD GG +
Sbjct: 787 KKAKSPTPSPSPPRNSDQEGGGK 809
Score = 36.6 bits (83), Expect = 0.13
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 731 PNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTP----RTP 786
P++ P P R +Q T + P T R P+ P P R T TP RTP
Sbjct: 525 PSRSASPSP-RKRQKETSPRGRRRRSPSPPPTRRRRSPSPAP-PPRRRRTPTPPPRRRTP 582
Query: 787 RTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPP 827
P + S R+ P ++ R P KR+T PP
Sbjct: 583 SPPPRRRSPSPRRYSPPIQ--RRYSPSPPPKRRTASPPPPP 621
Score = 33.1 bits (74), Expect = 1.5
Identities = 65/333 (19%), Positives = 102/333 (30%), Gaps = 56/333 (16%)
Query: 28 KPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQLPGAEGP 87
KP P PE K EP P E + RPR + T + RP + +
Sbjct: 249 KPEPIPEPK-EPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSR 307
Query: 88 AISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEH 147
+ S P P+ P + PP PP H
Sbjct: 308 SYSPRRR-------------------------PSPRRRPSPRRRTPPRRMP----PPPRH 338
Query: 148 SAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMK 207
VR ++R + + + + K + S P+ TR+L P
Sbjct: 339 RRSRSPVRR---RRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPP 395
Query: 208 EQEKGEGSDSKESPKTKSDESGEEKNGDE----DCQRGGQKKKGNKHKWVPLQIDMKPEV 263
+ + PKT+ + ++ N G K KHK
Sbjct: 396 RRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGT---------- 445
Query: 264 PREKLASRPTRPPEPRHIPANRG-EIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDET 322
EK S P+ P+PR + + E KG + A A + + + + + D
Sbjct: 446 --EKRES-PSPAPKPRKVELSESEEDKGGKMA-----AADSVQQRRQYRRQNQQSSSDSG 497
Query: 323 SSVKSDGAGGARASFRGRGRGRGRGRGRGRGGT 355
SS S+ R+ + GR R R +
Sbjct: 498 SSSSSEDERPKRSHVKNGEVGRRRRHSPSRSAS 530
Score = 30.4 bits (67), Expect = 9.6
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 760 PSTIARSLPTTVPESPNYRNTRTPRTPRTPQ------LKDSSQTSRFYPVVKEGRTLDAK 813
PS R+ P +P P +R +R+P R SS +SR K+ +
Sbjct: 321 PSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSS 380
Query: 814 MPRK-RKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPT 858
PRK R+ S++PP R HRP + + +PT
Sbjct: 381 PPRKTRRLSPSASPP----------RRRHRPSPPATPPPKTRHSPT 416
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 48.1 bits (113), Expect = 4e-05
Identities = 63/234 (26%), Positives = 93/234 (39%), Gaps = 21/234 (8%)
Query: 17 QAEEHGGLVRKKP--PPAPEGKGEPGPNDVRGG-----EPDGSARRPRPPCAKPHKEGTG 69
+AEE +K P APE K E G + G E D A+ + KEG+
Sbjct: 500 EAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS 559
Query: 70 QQER----ESPRPLQLPGAEGPAISDG--EEGGGEPGAGGGAAGAAGAGRRDFVEAPPPK 123
++E E + G E A + EE E A + + ++P PK
Sbjct: 560 EKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPK 619
Query: 124 --VNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGE 181
V K+ +P G+SP S + ++ VPK S V + G + +P E
Sbjct: 620 SPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPK----SPVEEKGKSPVSKSPVE 675
Query: 182 IAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGD 235
KS P+S P K + EQ++ E + KE+PK + E EEK D
Sbjct: 676 EKAKSPVPKS--PVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKD 727
Score = 34.3 bits (77), Expect = 0.66
Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 31/223 (13%)
Query: 117 VEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINW 176
VEAP KV + + +S E + A AV + + + + +
Sbjct: 441 VEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPE 500
Query: 177 PTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSD---ESGEEKN 233
E+A K ++ P+ + ++ KE+E+G+ + +E KSD E G EK
Sbjct: 501 AEEEEVAAKKSPVKATAPE----VKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKE 556
Query: 234 GDEDCQRGGQK---------------KKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEP 278
G + + G Q+ K+ K + ++ K E+ + +P + P
Sbjct: 557 GSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSP 616
Query: 279 RHIPANRGEIKGSESATYVPV-------APPTPAWQPEIKPEP 314
+P + E KG PV P +P + P P
Sbjct: 617 --VPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVP 657
Score = 33.9 bits (76), Expect = 0.87
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 133 PPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSH 192
PP+ + Q P + KV V + + +KV D + +V +
Sbjct: 428 PPITISSKIQKPKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEE 487
Query: 193 KPQPTRKLPPKKDMKEQE--------KGEGSDSKESPKTKSDESGEEKNGDED------- 237
K + + + + +E+E K + KE K +E G+E+ +ED
Sbjct: 488 KKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQ 547
Query: 238 CQRGGQKKKGNKHK 251
+ GG +K+G+ K
Sbjct: 548 AEEGGSEKEGSSEK 561
Score = 33.5 bits (75), Expect = 1.1
Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 37/264 (14%)
Query: 12 GATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQ 71
GA QAEE GG ++ EG+ E G + + A+ + K + T ++
Sbjct: 542 GAKSDQAEE-GGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEE 600
Query: 72 -----ERESPRPLQLPGAEGPAISDGEEGGGE-PGAGGGAAGAAGAGRRDFVEAPPPKVN 125
+ E P + P + P G+ + P G + + + ++P PK +
Sbjct: 601 LVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPK-S 659
Query: 126 PWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVG-------DFGDAINWPT 178
P + PV +SP E A + V ++ V + + ++VG + + P
Sbjct: 660 PVEEKGKSPV-----SKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPK 714
Query: 179 PGEIAHKSVQPQSHKPQPTRKLPPKKD---------------MKEQEKGEGSD-SKESPK 222
++ K +P+ + + P K++ ++++ K EG +E K
Sbjct: 715 EEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEK 774
Query: 223 TKSD-ESGEEKNGDEDCQRGGQKK 245
K+ E G E+ G + +G +K+
Sbjct: 775 EKAGGEGGSEEEGSDKGAKGSRKE 798
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 48.1 bits (113), Expect = 4e-05
Identities = 63/234 (26%), Positives = 93/234 (39%), Gaps = 21/234 (8%)
Query: 17 QAEEHGGLVRKKP--PPAPEGKGEPGPNDVRGG-----EPDGSARRPRPPCAKPHKEGTG 69
+AEE +K P APE K E G + G E D A+ + KEG+
Sbjct: 124 EAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS 183
Query: 70 QQER----ESPRPLQLPGAEGPAISDG--EEGGGEPGAGGGAAGAAGAGRRDFVEAPPPK 123
++E E + G E A + EE E A + + ++P PK
Sbjct: 184 EKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPK 243
Query: 124 --VNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGE 181
V K+ +P G+SP S + ++ VPK S V + G + +P E
Sbjct: 244 SPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPK----SPVEEKGKSPVSKSPVE 299
Query: 182 IAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGD 235
KS P+S P K + EQ++ E + KE+PK + E EEK D
Sbjct: 300 EKAKSPVPKS--PVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKD 351
Score = 34.3 bits (77), Expect = 0.66
Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 31/223 (13%)
Query: 117 VEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINW 176
VEAP KV + + +S E + A AV + + + + +
Sbjct: 65 VEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPE 124
Query: 177 PTPGEIAHKSVQPQSHKPQPTRKLPPKKDMKEQEKGEGSDSKESPKTKSD---ESGEEKN 233
E+A K ++ P+ + ++ KE+E+G+ + +E KSD E G EK
Sbjct: 125 AEEEEVAAKKSPVKATAPE----VKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKE 180
Query: 234 GDEDCQRGGQK---------------KKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEP 278
G + + G Q+ K+ K + ++ K E+ + +P + P
Sbjct: 181 GSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSP 240
Query: 279 RHIPANRGEIKGSESATYVPV-------APPTPAWQPEIKPEP 314
+P + E KG PV P +P + P P
Sbjct: 241 --VPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVP 281
Score = 33.9 bits (76), Expect = 0.87
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 15/134 (11%)
Query: 133 PPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSH 192
PP+ + Q P + KV V + + +KV D + +V +
Sbjct: 52 PPITISSKIQKPKVEAPKLKVQHKFVEEIIEETKVEDEKSEMEEALTAITEELAVSMKEE 111
Query: 193 KPQPTRKLPPKKDMKEQE--------KGEGSDSKESPKTKSDESGEEKNGDED------- 237
K + + + + +E+E K + KE K +E G+E+ +ED
Sbjct: 112 KKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQ 171
Query: 238 CQRGGQKKKGNKHK 251
+ GG +K+G+ K
Sbjct: 172 AEEGGSEKEGSSEK 185
Score = 33.5 bits (75), Expect = 1.1
Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 37/264 (14%)
Query: 12 GATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQ 71
GA QAEE GG ++ EG+ E G + + A+ + K + T ++
Sbjct: 166 GAKSDQAEE-GGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEE 224
Query: 72 -----ERESPRPLQLPGAEGPAISDGEEGGGE-PGAGGGAAGAAGAGRRDFVEAPPPKVN 125
+ E P + P + P G+ + P G + + + ++P PK +
Sbjct: 225 LVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPK-S 283
Query: 126 PWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVG-------DFGDAINWPT 178
P + PV +SP E A + V ++ V + + ++VG + + P
Sbjct: 284 PVEEKGKSPV-----SKSPVEEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPK 338
Query: 179 PGEIAHKSVQPQSHKPQPTRKLPPKKD---------------MKEQEKGEGSD-SKESPK 222
++ K +P+ + + P K++ ++++ K EG +E K
Sbjct: 339 EEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEK 398
Query: 223 TKSD-ESGEEKNGDEDCQRGGQKK 245
K+ E G E+ G + +G +K+
Sbjct: 399 EKAGGEGGSEEEGSDKGAKGSRKE 422
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 47.8 bits (112), Expect = 6e-05
Identities = 75/282 (26%), Positives = 96/282 (34%), Gaps = 44/282 (15%)
Query: 10 PGGATLLQAEEHGGLVRKKPPPAPEG-KGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGT 68
P G + E GL ++ PP +G KGEPG N +G + D + +P G
Sbjct: 2089 PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQ 2148
Query: 69 GQQ-----ERESPRPLQLPGAEGPAISDGEEGG-GEPGAGG--GAAGAAGAGRRDFVEAP 120
ER P PG +GP G GG G+PG G G AG AG ++
Sbjct: 2149 DGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGE 2208
Query: 121 PPKVNPWTKNALPPVLTTVNGQSPPEHSA----------PAKVVRAAVP--KQRKGSKVG 168
P + P + P V PP S P +V P R G+ G
Sbjct: 2209 PGETGPPGRGLTGPT-GAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGAS-G 2266
Query: 169 DFGDAINWPTPGEIAHKSVQPQSHKPQPTRK-------LPPKKDMKEQEKGEGSDSKESP 221
GD + PG +P PT LP K K G D P
Sbjct: 2267 KDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEP 2326
Query: 222 KTKSD--------------ESGEEKNGDEDCQRGGQKKKGNK 249
K D +GE + ED Q+G KG K
Sbjct: 2327 GAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFK 2368
Score = 45.4 bits (106), Expect = 3e-04
Identities = 59/215 (27%), Positives = 82/215 (38%), Gaps = 15/215 (6%)
Query: 7 PLLPGGATLLQAEEHGGLVRKKPPPAP-EGKGEPGPNDVRGGEPDGSARRPRPPCAKPHK 65
P LPG + E GL + PP P G G+PGP G + P +P +
Sbjct: 2152 PGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGE 2211
Query: 66 EGTGQQERESPR-PLQLPGAEGPAISDGEEGG-GEPGAGG-----GAAGAAGAGRRDFVE 118
G + P + LPG GP+ G +G G PG G GA G GA +D
Sbjct: 2212 TGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDR 2271
Query: 119 APPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPT 178
P P + PV G+ P + VV K KG+ G GD +
Sbjct: 2272 GSPGV--PGSPGLPGPV--GPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVG--E 2325
Query: 179 PGEIAHKSVQ-PQSHKPQPTRKLPPKKDMKEQEKG 212
PG + + P+ K + R P ++ +KG
Sbjct: 2326 PGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKG 2360
Score = 43.5 bits (101), Expect = 0.001
Identities = 38/108 (35%), Positives = 43/108 (39%), Gaps = 22/108 (20%)
Query: 30 PPAPEGK-GEPGPNDVRGGEP-DGSARRPRPPCAKPHKEGTGQQE-----RESPRPLQLP 82
PP P G+ + GP GEP D PR P P G + R P P P
Sbjct: 1701 PPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDP 1760
Query: 83 GAEGPAISDGEEG----------GGEPGAGG-----GAAGAAGAGRRD 115
G GPA G+ G G+PGA G GAAG AG RD
Sbjct: 1761 GVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRD 1808
Score = 41.2 bits (95), Expect = 0.005
Identities = 81/324 (25%), Positives = 107/324 (33%), Gaps = 51/324 (15%)
Query: 5 VEPLLPGGATLLQAEEHGGLVRKKPPPA--PEG-KGEPGPNDVRG-----GEPDGSARRP 56
++ + G AT L R +P P P+G KGEPG +RG G+P R
Sbjct: 1222 LDQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTG 1281
Query: 57 RPPCAKPHKEGTGQQERESPRPLQLPGAEGPAISDGEEGG-------------------- 96
P P T + ER P PG+ G A + G G
Sbjct: 1282 APGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERG 1341
Query: 97 -----GEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPA 151
GEPGA G G G G P P P + L + PP P
Sbjct: 1342 PRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGP----LGDPGPRGPP--GLPG 1395
Query: 152 KVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKDMK-EQE 210
++ K +G + G G PGE + P S PQ P KK K + E
Sbjct: 1396 TAMKG--DKGDRGER-GPPGPGEGGIAPGEPGLPGL-PGSPGPQGPVGPPGKKGEKGDSE 1451
Query: 211 KG-------EGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEV 263
G GS ++ P+ G + + G +KG + P P V
Sbjct: 1452 DGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGV 1511
Query: 264 PREKLASRPTRPPEPRHIPANRGE 287
A P PP P +GE
Sbjct: 1512 AGRPGAKGPEGPPGPTGRQGEKGE 1535
Score = 38.5 bits (88), Expect = 0.035
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query: 27 KKPPPAPEG-KGEPGPNDVRG----GEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQ- 80
++ PP P G GEPG + G G A RP + K G+Q R+ P L
Sbjct: 2023 ERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPG 2082
Query: 81 ---LPGAEGPAISDGEEGGGEPGAGG--GAAGAAG 110
PG GP +S E G G G G G GA G
Sbjct: 2083 TPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKG 2117
Score = 37.0 bits (84), Expect = 0.10
Identities = 74/312 (23%), Positives = 103/312 (33%), Gaps = 65/312 (20%)
Query: 22 GGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQL 81
G ++ + P P KG+PGP+ G PR P P G P L
Sbjct: 1353 GQVIGGEGPGLPGRKGDPGPSGPPG---------PRGPLGDPGPRG----------PPGL 1393
Query: 82 PGA--EGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTV 139
PG +G GE G PG GG A G G P V P K
Sbjct: 1394 PGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKK--------- 1444
Query: 140 NGQSPPEHSAPAKVVRAAVP-KQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQP-- 196
+ E AP + P +Q G G + PG + + + P P
Sbjct: 1445 GEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAG 1504
Query: 197 TRKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEE-KNGDE----DCQRGGQKKKGNKHK 251
+R LP + + +G + P + E GE + GD G + +KG
Sbjct: 1505 SRGLP---GVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKG---- 1557
Query: 252 WVPLQIDMKPEVPREKLASRPTR---------PPEPRHIPANRGEIKGSESATYVPVAPP 302
D+ P PR + R P P+ P +RG I + A PP
Sbjct: 1558 ------DVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRA-----GPP 1606
Query: 303 TPAWQPEIKPEP 314
+ P K +P
Sbjct: 1607 GDSGPPGEKGDP 1618
Score = 35.8 bits (81), Expect = 0.23
Identities = 31/96 (32%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 29 PPPAPEGKGEPGPNDVRG--GEPDGSARRPRPPCAKPHKEG-TGQQERESPRPLQLPGAE 85
PP P G PG + ++G G+P PR +P G G+ +E PR G
Sbjct: 2441 PPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPR-----GLT 2495
Query: 86 GPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPP 121
GP S GE GE G G A G + PP
Sbjct: 2496 GPPGSRGER--GEKGDVGSAGLKGDKGDSAVILGPP 2529
Score = 33.1 bits (74), Expect = 1.5
Identities = 37/118 (31%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 10 PGGATLLQAEEHGGLVRKKPPPAPEG-KGEPGPNDVRGGEP-----DGSARRPRPPCAKP 63
PG L+ + G + P +G KGE G + GG P DGSA P PP +
Sbjct: 2673 PGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGI-GGFPGPSGNDGSAGPPGPPGSVG 2731
Query: 64 HKEGTGQQ----ERESP--RPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRD 115
+ G Q ER P R + PG G GE+G P G G A D
Sbjct: 2732 PRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKGEAALTEDD 2789
Score = 32.7 bits (73), Expect = 1.9
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 23/119 (19%)
Query: 10 PGGATLLQAEEHGGLVRKKPPPAPEGK----GEPGPNDVRG--GEPDGSARRPRPPCAKP 63
PG L GL PP GK G+PG N G G+P R+ K
Sbjct: 1805 PGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGE----KG 1860
Query: 64 HKEGTGQQERESPR----------PLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAG 112
+G++ R+ P+ P PG GP G G G PG GG G
Sbjct: 1861 DSGASGREGRDGPKGERGAPGILGPQGPPGLPGPV---GPPGQGFPGVPGGTGPKGDRG 1916
Score = 32.3 bits (72), Expect = 2.5
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 31 PAPEG-KGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQLPGAEGPAI 89
P +G KG PGP +G G P PP K G LPGA G
Sbjct: 2353 PGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLP--------GLPGAPGVVG 2404
Query: 90 SDGEEGG----GEPGAGGGAAGAAGAGRRDFVEAP--PP 122
G+ G G+PG G G AG R+ + P PP
Sbjct: 2405 FPGQTGPRGEMGQPGP-SGERGLAGPPGREGIPGPLGPP 2442
Score = 32.0 bits (71), Expect = 3.3
Identities = 28/99 (28%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 30 PPAPEGK----GEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQ-LPGA 84
PP +G G PGP RG + + + P P G + R L+ PG
Sbjct: 1611 PPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPG-----KAGERGLRGAPGV 1665
Query: 85 EGPAISDGEEGG-GEPGAGGGAAGAAGAGRRDFVEAPPP 122
GP G++G GE G G + G R P P
Sbjct: 1666 RGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGP 1704
Score = 30.8 bits (68), Expect = 7.3
Identities = 95/400 (23%), Positives = 130/400 (32%), Gaps = 97/400 (24%)
Query: 5 VEPLLPGGATLLQAEEHGGLVRKKPPPAPEGKGEPGPNDVRGGE-PDGSARRPRPPCAKP 63
V P P GAT +Q E + PP G+PGP G P G R PP
Sbjct: 1559 VGPAGPRGATGVQGE--------RGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPP---- 1606
Query: 64 HKEGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPK 123
G GP G+ G P G G G E PP
Sbjct: 1607 -------------------GDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPP-- 1645
Query: 124 VNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIA 183
LP G++ A VR P KG + GD G+ +PG
Sbjct: 1646 ----GDPGLP-------GKAGERGLRGAPGVRG--PVGEKGDQ-GDPGEDGRNGSPGSSG 1691
Query: 184 HKSVQPQSHKPQPTRKLPPKKDMKEQEKGE-GSDSKESPKTKSDESG----------EEK 232
K + + P P +L +EKGE G +E P+ + G E
Sbjct: 1692 PKGDRGEPGPPGPPGRL-VDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGF 1750
Query: 233 NGDEDCQ-----RGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRP---------PEP 278
G Q RG +KG++ P +D + + + A+ P+ P P
Sbjct: 1751 RGPPGPQGDPGVRGPAGEKGDRG---PPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGR 1807
Query: 279 RHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQD-ETSSVKSDGAGGARASF 337
+P RG E P PP +P +P + ++ E DG G +
Sbjct: 1808 DGLPGLRG-----EQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDS 1862
Query: 338 RGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTP 377
GR GR G + G R G+ GP+ P
Sbjct: 1863 GASGR-------EGRDGPK-------GERGAPGILGPQGP 1888
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 47.8 bits (112), Expect = 6e-05
Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 26/228 (11%)
Query: 90 SDGEEG--GGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQS--PP 145
SD E+G E GA G + +G EA K N + N+ PP T ++ PP
Sbjct: 342 SDEEDGRDSDEEGAEGHRDSQSASGEERPPEADGKKGN--SPNSEPPTPKTAWAETSRPP 399
Query: 146 EHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKD 205
E + +P +G A NW PG+ + P P P + +
Sbjct: 400 ETEPGPPAPKPPLPPPHRGP-------AGNWGPPGDYPDRG-GPPCKPPAPEDEDEAWRQ 451
Query: 206 MKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPR 265
++Q E S + E + + +E EE+ E+ + +K ++D K P
Sbjct: 452 RRKQSSSEISLAVERARRRREE--EERRMQEERRAACAEKLK--------RLDEKFGAPD 501
Query: 266 EKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPE 313
++L + P PP PA + A P PP A PE +PE
Sbjct: 502 KRLKAEPAAPPAAPSTPAPPPAVPKELPAP--PAPPPASAPTPETEPE 547
Score = 47.0 bits (110), Expect = 1e-04
Identities = 89/387 (22%), Positives = 128/387 (33%), Gaps = 104/387 (26%)
Query: 29 PPPAPEGKGEPG-PNDVRGGEPDGSARRPRP-PCAKPHKEGTGQQER-ESPRPLQLPGAE 85
PPP P PG P + G P P P P G+ + + ++P P + P E
Sbjct: 829 PPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPPKE 888
Query: 86 GPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPP 145
A G E G +P G G+ G PPP+ T+ P + PP
Sbjct: 889 ETAQLTGPEAGRKPARGVGSGGQG---------PPPPRRESRTETRWGPRPGSSRRGIPP 939
Query: 146 EHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKKD 205
E P R A P ++ P P ++ +P + + PPK D
Sbjct: 940 EE--PGAPPRRAGPIKKP-------------PPPTKVEELPPKPLEQGDETPK--PPKPD 982
Query: 206 MKEQEKGEGSDSKESP---------KTKSDESGEEKNGDEDCQ--------------RG- 241
+ KG+ KE+P + + D S E+ G C+ RG
Sbjct: 983 PLKITKGKLGGPKETPPNGNLSPAPRLRRDYS-YERVGPTSCRGRGRGEYFARGRGFRGT 1041
Query: 242 -GQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSE-------- 292
G + +G + + + + + R P PP PR A+ +GSE
Sbjct: 1042 YGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRR 1101
Query: 293 -----------------------------SATYVPVAPPTPAWQPEIKPEPAWHDQDETS 323
+ T VP+APP P P P PA
Sbjct: 1102 RQRGSETGSETHESDLAPSDKEAPTPKEGTLTQVPLAPPPPGAPP--SPAPA-------- 1151
Query: 324 SVKSDGAGGARASFRGRGRGRGRGRGR 350
+ GG + RG RGRG GR
Sbjct: 1152 --RFTARGGRVFTPRGVPSRRGRGGGR 1176
Score = 45.4 bits (106), Expect = 3e-04
Identities = 72/324 (22%), Positives = 101/324 (31%), Gaps = 62/324 (19%)
Query: 19 EEHGGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRP 78
E G KPP P +G G G PD +PP + E Q+ ++S
Sbjct: 400 ETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSE 459
Query: 79 LQLPGAEGPAISDGEEG----------------------------GGEPGAGGGAAGAAG 110
+ L + EE EP A A
Sbjct: 460 ISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPA 519
Query: 111 AGRRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDF 170
E P P P P Q+PP S P V AA P G
Sbjct: 520 PPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTPGV-AAAPTLVSG------ 572
Query: 171 GDAINWPTPGEIAHKSVQPQ---SHKPQPTRKLPPKKD---MKEQEKGEG-SDSKESPKT 223
G + + + G V+PQ P+P ++PP K + KG+G +++ P
Sbjct: 573 GGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPPSQ 632
Query: 224 KSDESGEEKNGDEDCQRGGQK---KKGNKHKWVPLQIDMKPEVPREKLASRPTRPPEPRH 280
+K+ QR Q+ K+ +H+W Q P P P PP+P
Sbjct: 633 GLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTP------VPPSPPQPVT 686
Query: 281 IPANRGEIKGSESATYVPVAPPTP 304
+ A P APP P
Sbjct: 687 L-----------GAVPAPQAPPPP 699
Score = 44.7 bits (104), Expect = 5e-04
Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 58/289 (20%)
Query: 113 RRDFVEAPPPKVNPWTKNALPPVLTTVNGQSPPEHSAPAKVVRAAVPKQRKGSKVGDFGD 172
R + PPP PP L + G PE+ AP + + P + G +
Sbjct: 822 RSETPPVPPP----------PPYLASYPGF--PENGAPGPPI-SRFPLEEPGPR------ 862
Query: 173 AINWPTPG--EIAHKSVQPQSHKP--QPTRKLPPKKDMKEQEKGEGSDSKESPKTKSDES 228
+ WP PG E+A P +P + T +L + ++ +G GS + P + +
Sbjct: 863 PLPWP-PGSDEVAKIQTPPPKKEPPKEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESR 921
Query: 229 GEEKNGDEDCQRGGQKKKGN---------------KHKWVPLQIDMKPEVPREKLASRPT 273
E + G R G ++G K P +++ P P E+ P
Sbjct: 922 TETRWGP----RPGSSRRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQGDETP- 976
Query: 274 RPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGA 333
+PP+P + +G++ G + P +PA P ++ + ++ TS G
Sbjct: 977 KPPKPDPLKITKGKLGGPKETP--PNGNLSPA--PRLRRDYSYERVGPTSC-----RGRG 1027
Query: 334 RASFRGRGRG-----RGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTP 377
R + RGRG GRGRG R++ +++ + G GP P
Sbjct: 1028 RGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGPNHP 1076
Score = 44.7 bits (104), Expect = 5e-04
Identities = 91/376 (24%), Positives = 133/376 (35%), Gaps = 69/376 (18%)
Query: 26 RKKPPPA---PEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQ--------ERE 74
++ PPP P+ G PG GG G + R ++ K+ + + ER+
Sbjct: 1338 KEAPPPVLLTPKAVGTPGGGG--GGAVPGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQ 1395
Query: 75 SPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKVNPWTKNALPP 134
+ RP GP G G G GGG G G GR D P PK PP
Sbjct: 1396 NRRP-------GPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNRSRPPEERPP 1448
Query: 135 VLTTVNGQSPPE-----------HSAPAKVVRA-AVPKQRKGSKVGDFGDAINWPTPGEI 182
L PP HS PA + +A A R+GS G
Sbjct: 1449 GLPL--PPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTA---------PGGHP 1497
Query: 183 AHKSVQPQSHKPQ-PTRKLPPKKDMKEQEKGEGSDSK-ESP--------KTKSDESGEEK 232
HK PQ+ PQ P+ + P + + + G SD E P T D +G
Sbjct: 1498 RHKPGLPQA--PQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSP 1555
Query: 233 NGDEDCQRGGQKKKGNKHKWVPLQ-----IDMKPEVPREKLASRPTRPP-------EPRH 280
+ +R +K + + + +P + KPE P + SR T H
Sbjct: 1556 FPPKRRERPPRKPELLQEESLPPPHSSGFLGSKPEGPGPQAESRDTGTEALTPHIWNRLH 1615
Query: 281 IPANRGEIKGSESATYV-PVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRG 339
+R + S ++ P++P E+ + D S V S G R+S G
Sbjct: 1616 TATSRKSYRPSSMEPWMEPLSPFEDVAGTEMSQSDSGVDLSGDSQV-SSGPCSQRSSPDG 1674
Query: 340 RGRGRGRGRGRGRGGT 355
+G G + GG+
Sbjct: 1675 GLKGAAEGPPKRPGGS 1690
Score = 31.2 bits (69), Expect = 5.6
Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 23/181 (12%)
Query: 723 LTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPE----SPNYR 778
L EP P P PP A+ +L P P + P T PE +P +
Sbjct: 504 LKAEPAAPPAAPSTPAPP-------PAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQ 556
Query: 779 NTRTPRTPRTPQL-KDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMD 837
+T TP P L TS E ++ ++P K PP E
Sbjct: 557 STPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSK----EGPEPPEEVPPPTTPP 612
Query: 838 SREHRPRTASISSSPSEGTPTVG-SYGCTPQSL-PKFQHPSHE-LLKENGFTQHVYHKYR 894
+ P+ I P+ P+ G Y +SL P+FQ E LLK+ QH + +++
Sbjct: 613 VPKVEPKGDGI--GPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQ--QQHQWQQHQ 668
Query: 895 R 895
+
Sbjct: 669 Q 669
Score = 31.2 bits (69), Expect = 5.6
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 22 GGLVRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPRPPCAKPHKEGTGQQERESPRPLQL 81
GGL P G N V P GS PR P PH + RE P P
Sbjct: 1674 GGLKGAAEGPPKRPGGSSPLNAVPCEGPPGS-EPPRRPPPAPHDGDRKELPREQPLP--- 1729
Query: 82 PGAEGPAISDGEEGGGEPG 100
PG G S + G EPG
Sbjct: 1730 PGPIGTERSQRTDRGTEPG 1748
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,590,193
Number of Sequences: 37866
Number of extensions: 3504926
Number of successful extensions: 28517
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 1093
Number of HSP's that attempted gapping in prelim test: 19769
Number of HSP's gapped (non-prelim): 7728
length of query: 1096
length of database: 18,247,518
effective HSP length: 113
effective length of query: 983
effective length of database: 13,968,660
effective search space: 13731192780
effective search space used: 13731192780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.