Guide to the Human Genome
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Name: CHP Sequence: fasta or formatted (195aa) NCBI GI: 6005731
Description:

calcium binding protein P22

Referenced in:

Calmodulin and Calcium
Serine / Threonine Protein Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          8           1
 C cysteine            0.0          0           0
 D aspartate           8.7         17           1
 E glutamate          10.3         20           2
 F phenylalanine       6.7         13           2
 G glycine             5.6         11           1
 H histidine           2.1          4           1
 I isoleucine          6.7         13           2
 K lysine              5.6         11           2
 L leucine             9.7         19           2
 M methionine          2.6          5           2
 N asparagine          4.6          9           1
 P proline             3.1          6           1
 Q glutamine           4.1          8           1
 R arginine            8.2         16           1
 S serine              8.2         16           1
 T threonine           4.1          8           1
 V valine              4.6          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium binding protein P22 
CHP2                  0.603   hepatocellular carcinoma antigen gene 520 
PPP3R1                0.294   protein phosphatase 3, regulatory subunit B, alpha is...
PPP3R2                0.269   protein phosphatase 3 regulatory subunit B, beta iso...
TESC                  0.250   tescalcin 
CIB2                  0.131   DNA-dependent protein kinase catalytic subunit-intera...
CIB1                  0.103   calcium and integrin binding 1 
CIB4                  0.097   calcium and integrin binding family member 4 
CIB3                  0.092   DNA-dependent protein kinase catalytic subunit-inter...
HPCAL4                0.089   hippocalcin-like protein 4 
CALM3                 0.083   calmodulin 3 
CALM2                 0.083   calmodulin 2 
CALM1                 0.083   calmodulin 1 
VSNL1                 0.078   visinin-like 1 
KCNIP2                0.078   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.078   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.078   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.078   Kv channel interacting protein 2 isoform 4 
KCNIP2                0.078   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.078   Kv channel interacting protein 2 isoform 2 
CALML3                0.075   calmodulin-like 3 
FREQ                  0.075   frequenin homolog isoform 1 
HPCAL1                0.072   hippocalcin-like 1 
HPCAL1                0.072   hippocalcin-like 1 
NCALD                 0.069   neurocalcin delta 
NCALD                 0.069   neurocalcin delta 
NCALD                 0.069   neurocalcin delta 
NCALD                 0.069   neurocalcin delta 
NCALD                 0.069   neurocalcin delta 
NCALD                 0.069   neurocalcin delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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