Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CLP1 Sequence: fasta or formatted (425aa) NCBI GI: 5803029
Description:

ATP/GTP-binding protein isoform 1

Referenced in:

Polyadenylation

Other entries for this name:
alt prot [361aa] ATP/GTP-binding protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         24           2
 C cysteine            1.9          8           1
 D aspartate           4.7         20           2
 E glutamate           8.2         35           3
 F phenylalanine       4.9         21           1
 G glycine             7.1         30           2
 H histidine           2.1          9           2
 I isoleucine          3.1         13           1
 K lysine              4.9         21           2
 L leucine             9.4         40           3
 M methionine          2.4         10           1
 N asparagine          3.3         14           1
 P proline             4.9         21           1
 Q glutamine           3.1         13           1
 R arginine            7.1         30           2
 S serine              6.1         26           1
 T threonine           6.8         29           2
 V valine             10.8         46           4
 W tryptophan          0.5          2           1
 Y tyrosine            3.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP/GTP-binding protein isoform 1 
CLP1                  0.519   ATP/GTP-binding protein isoform 2 
NOL9                  0.037   nucleolar protein 9 
LOC100292716          0.015   PREDICTED: similar to pseudoautosomal GTP-binding p...
GTPBP6                0.015   pseudoautosomal GTP-binding protein-like protein [Hom...
SEPT9                 0.008   septin 9 isoform f 
SEPT9                 0.008   septin 9 isoform d 
SEPT9                 0.008   septin 9 isoform e 
SEPT9                 0.008   septin 9 isoform b 
SEPT9                 0.008   septin 9 isoform e 
SEPT9                 0.008   septin 9 isoform a 
SEPT9                 0.008   septin 9 isoform c 
SRL                   0.007   sarcalumenin 
CDH17                 0.006   cadherin 17 precursor 
CDH17                 0.006   cadherin 17 precursor 
EHD4                  0.006   EH-domain containing 4 
SEPT3                 0.006   septin 3 isoform A 
SEPT3                 0.006   septin 3 isoform B 
PAX2                  0.005   paired box protein 2 isoform d 
PAX2                  0.005   paired box protein 2 isoform b 
PAX2                  0.005   paired box protein 2 isoform a 
PAX2                  0.005   paired box protein 2 isoform c 
PAX2                  0.005   paired box protein 2 isoform e 
PTPN9                 0.005   protein tyrosine phosphatase, non-receptor type 9 [Ho...
GPN2                  0.005   ATP binding domain 1 family, member B 
C6orf103              0.005   hypothetical protein LOC79747 
GPN3                  0.005   GPN-loop GTPase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press