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Search of human proteins with 57164953
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2 is... 710 0.0
gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2 is... 710 0.0
gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2 is... 710 0.0
gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2 is... 653 0.0
gi|46409302 NIPA-like domain containing 1 [Homo sapiens] 470 e-132
gi|149944536 ichthyin protein [Homo sapiens] 415 e-116
gi|41406091 non-imprinted in Prader-Willi/Angelman syndrome 1 is... 271 9e-73
gi|214010179 non-imprinted in Prader-Willi/Angelman syndrome 1 i... 228 6e-60
gi|13376097 NIPA-like domain containing 2 [Homo sapiens] 149 3e-36
gi|10092687 NIPA-like domain containing 3 [Homo sapiens] 120 1e-27
gi|147907044 transmembrane protein 22 [Homo sapiens] 32 0.88
gi|148235965 transmembrane protein 22 [Homo sapiens] 32 0.88
gi|148224156 transmembrane protein 22 [Homo sapiens] 32 0.88
gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo ... 32 1.2
gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo ... 32 1.2
gi|55741641 kinase D-interacting substrate of 220 kDa [Homo sapi... 31 2.0
gi|52353288 olfactory receptor, family 8, subfamily D, member 4 ... 31 2.0
gi|32964823 antimicrobial peptide RYA3 [Homo sapiens] 30 2.6
gi|62460635 transmembrane 9 superfamily member 1 isoform b [Homo... 30 3.4
gi|21361315 transmembrane 9 superfamily member 1 isoform a [Homo... 30 3.4
gi|196123588 NADH dehydrogenase subunit 4 [Homo sapiens neandert... 30 4.4
gi|251831116 NADH dehydrogenase subunit 4 [Homo sapiens] 30 4.4
gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens] 30 4.4
gi|53828674 olfactory receptor, family 13, subfamily C, member 4... 29 5.7
gi|189027121 solute carrier family 35, member F1 [Homo sapiens] 29 7.5
gi|47827222 solute carrier family 35, member E4 [Homo sapiens] 29 7.5
gi|4504993 leukemia inhibitory factor receptor precursor [Homo s... 28 9.8
gi|189083786 leukemia inhibitory factor receptor precursor [Homo... 28 9.8
gi|37693993 nucleoside diphosphate kinase 3 [Homo sapiens] 28 9.8
>gi|57013272 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 710 bits (1833), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW 60
MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW
Sbjct: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW 60
Query: 61 AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 120
AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI
Sbjct: 61 AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 120
Query: 121 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 180
LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV
Sbjct: 121 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 180
Query: 181 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 240
YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL
Sbjct: 181 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 240
Query: 241 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK
Sbjct: 241 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
Query: 301 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 360
DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF
Sbjct: 301 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 360
>gi|57164953 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 710 bits (1833), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW 60
MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW
Sbjct: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW 60
Query: 61 AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 120
AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI
Sbjct: 61 AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 120
Query: 121 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 180
LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV
Sbjct: 121 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 180
Query: 181 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 240
YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL
Sbjct: 181 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 240
Query: 241 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK
Sbjct: 241 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
Query: 301 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 360
DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF
Sbjct: 301 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 360
>gi|57013274 non imprinted in Prader-Willi/Angelman syndrome 2
isoform a [Homo sapiens]
Length = 360
Score = 710 bits (1833), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW 60
MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW
Sbjct: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW 60
Query: 61 AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 120
AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI
Sbjct: 61 AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 120
Query: 121 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 180
LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV
Sbjct: 121 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 180
Query: 181 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 240
YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL
Sbjct: 181 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 240
Query: 241 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK
Sbjct: 241 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
Query: 301 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 360
DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF
Sbjct: 301 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 360
>gi|57164951 non imprinted in Prader-Willi/Angelman syndrome 2
isoform b [Homo sapiens]
Length = 341
Score = 653 bits (1684), Expect = 0.0
Identities = 340/360 (94%), Positives = 341/360 (94%), Gaps = 19/360 (5%)
Query: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWW 60
MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRA
Sbjct: 1 MSQGRGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRA-------------- 46
Query: 61 AGLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 120
+GAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI
Sbjct: 47 -----VGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSI 101
Query: 121 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 180
LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV
Sbjct: 102 LGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILV 161
Query: 181 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 240
YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL
Sbjct: 162 YITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRAL 221
Query: 241 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK
Sbjct: 222 DIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 281
Query: 301 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 360
DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF
Sbjct: 282 DVSFSLASLPVSFRKDEKAMNGNLSNMYEVLNNNEESLTCGIEQHTGENVSRRNGNLTAF 341
>gi|46409302 NIPA-like domain containing 1 [Homo sapiens]
Length = 410
Score = 470 bits (1209), Expect = e-132
Identities = 232/329 (70%), Positives = 276/329 (83%), Gaps = 1/329 (0%)
Query: 7 KYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSM 66
KY Y+GL LA+SSSIFIG SFILKKKGLL+LA KG RAGQGGH+YLKEWLWW GLLSM
Sbjct: 65 KYSLYVGLVLAVSSSIFIGSSFILKKKGLLQLASKGFTRAGQGGHSYLKEWLWWVGLLSM 124
Query: 67 GAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVM 126
GAGE ANFAAYAFAPATLVTPLGALSVL+SAILSSYFLNE LN+HGKIGC+LSILGSTVM
Sbjct: 125 GAGEAANFAAYAFAPATLVTPLGALSVLISAILSSYFLNEHLNIHGKIGCILSILGSTVM 184
Query: 127 VIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICS 186
VIHAP+EEE+ +L+EM KL DPGF+ FA ++ +++L+LI +V P+ GQTNILVYI+ICS
Sbjct: 185 VIHAPQEEEVTSLHEMEMKLRDPGFISFAVIITVISLVLILIVAPKKGQTNILVYISICS 244
Query: 187 VIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTS 246
+IGAFSVS VKGLGIAIKEL KPV +HPL ++LL L++ V+TQINYLN+ALD FNTS
Sbjct: 245 LIGAFSVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTS 304
Query: 247 IVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSL 306
+VTPIYYVFFT+ V+TCSAILF+EW M D+IGTLSGFFTII+GIFLLHAFK+ +
Sbjct: 305 LVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKNTDITW 364
Query: 307 ASLPVSFRKDEKAMNGNLSNMYEVLNNNE 335
+ L + +K+ ++N N N Y +L N E
Sbjct: 365 SELTSTAKKEAVSLNVN-ENNYVLLENLE 392
>gi|149944536 ichthyin protein [Homo sapiens]
Length = 466
Score = 415 bits (1066), Expect = e-116
Identities = 207/306 (67%), Positives = 244/306 (79%)
Query: 5 RGKYDFYIGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLL 64
R Y FYIGLGLA SS IG S ILKKKGLLRL G+ RA GG YLK+ +WWAG L
Sbjct: 113 RQNYGFYIGLGLAFLSSFLIGSSVILKKKGLLRLVATGATRAVDGGFGYLKDAMWWAGFL 172
Query: 65 SMGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGST 124
+M AGEVANF AYAFAPAT+VTPLGALSVL+SAILSSYFL E LNL GK+GC++ + GST
Sbjct: 173 TMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLGKLGCVICVAGST 232
Query: 125 VMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITI 184
VMVIHAP+EE++ T+ EM+ K+ D GF+VFA L+++ LILIFV+ PR+GQ NIL+YI I
Sbjct: 233 VMVIHAPEEEKVTTIMEMASKMKDTGFIVFAVLLLVSCLILIFVIAPRYGQRNILIYIII 292
Query: 185 CSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFN 244
CSVIGAFSV+ VKGLGI IK F G PV+RHPL +IL L L + +STQ+N+LNRALDIFN
Sbjct: 293 CSVIGAFSVAAVKGLGITIKNFFQGLPVVRHPLPYILSLILALSLSTQVNFLNRALDIFN 352
Query: 245 TSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSF 304
TS+V PIYYVFFTT V+T S ILFKEW M D+ GTLSGF TII+G+F+LHAFKD+
Sbjct: 353 TSLVFPIYYVFFTTVVVTSSIILFKEWYSMSAVDIAGTLSGFVTIILGVFMLHAFKDLDI 412
Query: 305 SLASLP 310
S ASLP
Sbjct: 413 SCASLP 418
>gi|41406091 non-imprinted in Prader-Willi/Angelman syndrome 1
isoform 1 [Homo sapiens]
Length = 329
Score = 271 bits (692), Expect = 9e-73
Identities = 134/308 (43%), Positives = 206/308 (66%), Gaps = 10/308 (3%)
Query: 12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71
+GLG+A+ SS+ G +F+L+KKG++R R+G+ +YL + +WWAG ++M G++
Sbjct: 30 LGLGVAVVSSLVNGSTFVLQKKGIVRAKRRGT--------SYLTDIVWWAGTIAMAVGQI 81
Query: 72 ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAP 131
NF AY P LVTPLGAL V +IL+SY L E+LN+ GK+GCLLS GS V++IH+P
Sbjct: 82 GNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVVLIIHSP 141
Query: 132 KEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAF 191
K E + T E+ KL +P FV + +V+++ L+LIF + P HG TNI+VYI+ICS++G+F
Sbjct: 142 KSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISICSLLGSF 201
Query: 192 SVSCVKGLGIAIKELFAGKPVLRHPLA-WILLLSLIVC-VSTQINYLNRALDIFNTSIVT 249
+V KG+G+A +++ P + L ++LL+++ C + Q Y+N+AL+ F++S+
Sbjct: 202 TVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFG 261
Query: 250 PIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASL 309
IYYV FTT VL SAILF+EW ++ + D +G GF T+ VGI L+ FK+ +F+L +
Sbjct: 262 AIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFNFNLGEM 321
Query: 310 PVSFRKDE 317
S K +
Sbjct: 322 NKSNMKTD 329
>gi|214010179 non-imprinted in Prader-Willi/Angelman syndrome 1
isoform 2 [Homo sapiens]
Length = 254
Score = 228 bits (581), Expect = 6e-60
Identities = 113/254 (44%), Positives = 169/254 (66%), Gaps = 2/254 (0%)
Query: 66 MGAGEVANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTV 125
M G++ NF AY P LVTPLGAL V +IL+SY L E+LN+ GK+GCLLS GS V
Sbjct: 1 MAVGQIGNFLAYTAVPTVLVTPLGALGVPFGSILASYLLKEKLNILGKLGCLLSCAGSVV 60
Query: 126 MVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITIC 185
++IH+PK E + T E+ KL +P FV + +V+++ L+LIF + P HG TNI+VYI+IC
Sbjct: 61 LIIHSPKSESVTTQAELEEKLTNPVFVGYLCIVLLMLLLLIFWIAPAHGPTNIMVYISIC 120
Query: 186 SVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLA-WILLLSLIVC-VSTQINYLNRALDIF 243
S++G+F+V KG+G+A +++ P + L ++LL+++ C + Q Y+N+AL+ F
Sbjct: 121 SLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECF 180
Query: 244 NTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVS 303
++S+ IYYV FTT VL SAILF+EW ++ + D +G GF T+ VGI L+ FK+ +
Sbjct: 181 DSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKEFN 240
Query: 304 FSLASLPVSFRKDE 317
F+L + S K +
Sbjct: 241 FNLGEMNKSNMKTD 254
>gi|13376097 NIPA-like domain containing 2 [Homo sapiens]
Length = 368
Score = 149 bits (377), Expect = 3e-36
Identities = 87/284 (30%), Positives = 152/284 (53%), Gaps = 7/284 (2%)
Query: 13 GLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEVA 72
G+ LA+ ++ I S ++K L+LA++ R Y K LWW G+L M GE
Sbjct: 50 GVLLAILGNLVISISLNIQKYSHLQLAQQEHPRP------YFKSVLWWGGVLLMAVGETG 103
Query: 73 NFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPK 132
NFAAY FAP TL+ PLG +SV SAI+S FL + L +G L+ G+ ++V AP
Sbjct: 104 NFAAYGFAPITLIAPLGCVSVTGSAIISVTFLKDNLRASDLLGTTLAFAGTYLLVNFAPN 163
Query: 133 EEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFS 192
+ + + + L F+++ L +++ IL++ R G ++++ +T+ +++ + +
Sbjct: 164 ITQAISARTVQYYLVGWQFLIYVILEILIFCILLYFY-KRKGMKHMVILLTLVAILASLT 222
Query: 193 VSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIY 252
V VK + I K L +P+ +I+ + +I Q+ +LN+A ++NT+ V P+
Sbjct: 223 VISVKAVSGMITFSVMDKMQLTYPIFYIMFIIMIASCVFQVKFLNQATKLYNTTTVVPVN 282
Query: 253 YVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLL 296
++FFT S + I ++E+ P V L G F +G+FL+
Sbjct: 283 HIFFTISAIIAGIIFYQEFLGAPFLTVFIYLFGCFLSFLGVFLV 326
>gi|10092687 NIPA-like domain containing 3 [Homo sapiens]
Length = 406
Score = 120 bits (302), Expect = 1e-27
Identities = 88/342 (25%), Positives = 167/342 (48%), Gaps = 25/342 (7%)
Query: 12 IGLGLAMSSSIFIGGSFILKKKGLLRLARKGSMRAGQGGHAYLKEWLWWAGLLSMGAGEV 71
IG LA+ + + + L+K +RLA RA Y K WW GL M GE+
Sbjct: 35 IGALLAIFGHLVVSIALNLQKYCHIRLAGSKDPRA------YFKTKTWWLGLFLMLLGEL 88
Query: 72 ANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNE--------RLNLHGKIGCLLSILGS 123
FA+YAFAP +L+ PL A+SV+ SAI+ F+ E R + +GC L+++G+
Sbjct: 89 GVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEKWKPKDFLRRYVLSFVGCGLAVVGT 148
Query: 124 TVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYIT 183
++V AP E T ++ L F+++ + +I+ +L++ ++ NI+V +
Sbjct: 149 YLLVTFAPNSHEKMTGENVTRHLVSWPFLLYMLVEIILFCLLLYFYKEKNA-NNIVVILL 207
Query: 184 ICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIF 243
+ +++G+ +V VK + + G L +P+ +++ + ++ Q +L++A ++
Sbjct: 208 LVALLGSMTVVTVKAVAGMLVLSIQGNLQLDYPIFYVMFVCMVATAVYQAAFLSQASQMY 267
Query: 244 NTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLL--HAFKD 301
++S++ + Y+ TT +T AI + ++ V + G +G+FL+ + K
Sbjct: 268 DSSLIASVGYILSTTIAITAGAIFYLDFIGEDVLHICMFALGCLIAFLGVFLITRNRKKP 327
Query: 302 VSF----SLASLPVSFRKDEKAMNG----NLSNMYEVLNNNE 335
+ F S+ ++P +K M S Y L NN+
Sbjct: 328 IPFEPYISMDAMPGMQNMHDKGMTVQPELKASFSYGALENND 369
>gi|147907044 transmembrane protein 22 [Homo sapiens]
Length = 412
Score = 32.0 bits (71), Expect = 0.88
Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 81 PATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLN 140
P+ T A + + SAIL+ ++E++ + SILG +++I +E+ LN
Sbjct: 191 PSNGTTMWRATTTVFSAILAFLLVDEKMAYVDMATVVCSILGVCLVMIPNIVDEDNSLLN 250
Query: 141 EMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLG 200
G V A L +++I+ +I I++ + + F + G
Sbjct: 251 AWKEAFGYT-MTVMAGLTTALSMIV---------YRSIKEKISMWTALFTFGWT---GTI 297
Query: 201 IAIKELFAGKPVLRHPL------AWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYV 254
I +F +L+ P+ W L+++ VC + + ALD F+ ++V+ + ++
Sbjct: 298 WGISTMF----ILQEPIIPLDGETWSYLIAICVCSTAAFLGVYYALDKFHPALVSTVQHL 353
Query: 255 FFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
+++ +L + I + G I++ +F+L +K
Sbjct: 354 EIVVAMVLQLLVLH-------IFPSIYDVFGGVIIMISVFVLAGYK 392
>gi|148235965 transmembrane protein 22 [Homo sapiens]
Length = 412
Score = 32.0 bits (71), Expect = 0.88
Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 81 PATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLN 140
P+ T A + + SAIL+ ++E++ + SILG +++I +E+ LN
Sbjct: 191 PSNGTTMWRATTTVFSAILAFLLVDEKMAYVDMATVVCSILGVCLVMIPNIVDEDNSLLN 250
Query: 141 EMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLG 200
G V A L +++I+ +I I++ + + F + G
Sbjct: 251 AWKEAFGYT-MTVMAGLTTALSMIV---------YRSIKEKISMWTALFTFGWT---GTI 297
Query: 201 IAIKELFAGKPVLRHPL------AWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYV 254
I +F +L+ P+ W L+++ VC + + ALD F+ ++V+ + ++
Sbjct: 298 WGISTMF----ILQEPIIPLDGETWSYLIAICVCSTAAFLGVYYALDKFHPALVSTVQHL 353
Query: 255 FFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
+++ +L + I + G I++ +F+L +K
Sbjct: 354 EIVVAMVLQLLVLH-------IFPSIYDVFGGVIIMISVFVLAGYK 392
>gi|148224156 transmembrane protein 22 [Homo sapiens]
Length = 412
Score = 32.0 bits (71), Expect = 0.88
Identities = 45/226 (19%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 81 PATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLN 140
P+ T A + + SAIL+ ++E++ + SILG +++I +E+ LN
Sbjct: 191 PSNGTTMWRATTTVFSAILAFLLVDEKMAYVDMATVVCSILGVCLVMIPNIVDEDNSLLN 250
Query: 141 EMSHKLGDPGFVVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLG 200
G V A L +++I+ +I I++ + + F + G
Sbjct: 251 AWKEAFGYT-MTVMAGLTTALSMIV---------YRSIKEKISMWTALFTFGWT---GTI 297
Query: 201 IAIKELFAGKPVLRHPL------AWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYV 254
I +F +L+ P+ W L+++ VC + + ALD F+ ++V+ + ++
Sbjct: 298 WGISTMF----ILQEPIIPLDGETWSYLIAICVCSTAAFLGVYYALDKFHPALVSTVQHL 353
Query: 255 FFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFK 300
+++ +L + I + G I++ +F+L +K
Sbjct: 354 EIVVAMVLQLLVLH-------IFPSIYDVFGGVIIMISVFVLAGYK 392
>gi|239749916 PREDICTED: hypothetical protein XP_002347212 [Homo
sapiens]
Length = 391
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 152 VVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKEL---FA 208
VV +LVV+ +++ + P T++ V IT VI V + LG+ I L
Sbjct: 57 VVLTSLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVVVT 116
Query: 209 GKPVLRHPLAWIL------LLSLIVCVSTQINYLNRALDIFNTSIV--TPIYYVFFTTSV 260
++ PL ++ + SL+V +++ + + + +SIV TP+ V + +V
Sbjct: 117 SLVMVITPLVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTV 176
Query: 261 LTCS 264
+ S
Sbjct: 177 IITS 180
>gi|239744219 PREDICTED: hypothetical protein XP_002343076 [Homo
sapiens]
Length = 398
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 152 VVFATLVVIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKEL---FA 208
VV +LVV+ +++ + P T++ V IT VI V + LG+ I L
Sbjct: 64 VVLTSLVVVTTSLVMVITPPFAVITSLGVVITSLVVIITCLVLVITALGVVITSLGVVVT 123
Query: 209 GKPVLRHPLAWIL------LLSLIVCVSTQINYLNRALDIFNTSIV--TPIYYVFFTTSV 260
++ PL ++ + SL+V +++ + + + +SIV TP+ V + +V
Sbjct: 124 SLVMVITPLVAVITPLGVVITSLVVVITSLVMVITSLTVVITSSIVVITPLVMVITSLTV 183
Query: 261 LTCS 264
+ S
Sbjct: 184 IITS 187
>gi|55741641 kinase D-interacting substrate of 220 kDa [Homo
sapiens]
Length = 1771
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 149 PGFVVFATLVVIV----ALILIFVVGPRHGQTNILVYITICSVIG-AFSVSC 195
P FV+F ++ + L+ IF V P+H N V I+I SV+G AF ++C
Sbjct: 658 PSFVIFLFIIGCIISGITLLAIFRVDPKHLTVN-AVLISIASVVGLAFVLNC 708
>gi|52353288 olfactory receptor, family 8, subfamily D, member 4
[Homo sapiens]
Length = 314
Score = 30.8 bits (68), Expect = 2.0
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 184 ICSVIGA--FSVSCVKGL---GIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQIN---- 234
+CS++ A FSV + G ++ F G +++H I+ L + C ST I+
Sbjct: 140 VCSLLVAAVFSVGFTDAVIHGGCILRLSFCGSNIIKHYFCDIVPLIKLSCSSTYIDELLI 199
Query: 235 YLNRALDIFNTSIVTPIYYVFFTTSVL 261
++ ++ TS+ I Y F TS+L
Sbjct: 200 FVIGGFNMVATSLTIIISYAFILTSIL 226
>gi|32964823 antimicrobial peptide RYA3 [Homo sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 276 VDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASLPV 311
VD V+G ++ ++G+ L A V FSLA+LP+
Sbjct: 202 VDSVLGVVNELLGAVLGLVSLGALGSVEFSLATLPL 237
>gi|62460635 transmembrane 9 superfamily member 1 isoform b [Homo
sapiens]
Length = 489
Score = 30.0 bits (66), Expect = 3.4
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 184 ICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPL---AWILLLSLIVCVSTQI-NYLNRA 239
+C+V+G + G GI + L V RH A ILL +L C+S + ++ R
Sbjct: 307 LCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYALTCCISGYVSSHFYRQ 366
Query: 240 LD----IFNTSIVTPIYYV--FFTTSVLTCSAILFKEWQDMPVDDV-----IGTLSGF-F 287
+ ++N + T ++ V F T SV+ Q +P + + L GF
Sbjct: 367 IGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPL 426
Query: 288 TIIVGIF 294
T+I GIF
Sbjct: 427 TVIGGIF 433
>gi|21361315 transmembrane 9 superfamily member 1 isoform a [Homo
sapiens]
Length = 606
Score = 30.0 bits (66), Expect = 3.4
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 184 ICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPL---AWILLLSLIVCVSTQI-NYLNRA 239
+C+V+G + G GI + L V RH A ILL +L C+S + ++ R
Sbjct: 307 LCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYALTCCISGYVSSHFYRQ 366
Query: 240 LD----IFNTSIVTPIYYV--FFTTSVLTCSAILFKEWQDMPVDDV-----IGTLSGF-F 287
+ ++N + T ++ V F T SV+ Q +P + + L GF
Sbjct: 367 IGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPL 426
Query: 288 TIIVGIF 294
T+I GIF
Sbjct: 427 TVIGGIF 433
>gi|196123588 NADH dehydrogenase subunit 4 [Homo sapiens
neanderthalensis]
Length = 459
Score = 29.6 bits (65), Expect = 4.4
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 223 LSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGT 282
L L + +S QI+ + + T ++ ++Y+FF T+++ AI+ + W + P GT
Sbjct: 94 LYLSMLISLQISLI---MTFTATELI--MFYIFFETTLIPTLAIITR-WGNQPERLNAGT 147
Query: 283 LSGFFTIIVGIFLLHAFKDVSFSLASLPV 311
F+T++ + LL A +L SL +
Sbjct: 148 YFLFYTLVGSLPLLIALIYTHNTLGSLNI 176
>gi|251831116 NADH dehydrogenase subunit 4 [Homo sapiens]
Length = 459
Score = 29.6 bits (65), Expect = 4.4
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 223 LSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGT 282
L L + +S QI+ + + T ++ ++Y+FF T+++ AI+ + W + P GT
Sbjct: 94 LYLSMLISLQISLI---MTFTATELI--MFYIFFETTLIPTLAIITR-WGNQPERLNAGT 147
Query: 283 LSGFFTIIVGIFLLHAFKDVSFSLASLPV 311
F+T++ + LL A +L SL +
Sbjct: 148 YFLFYTLVGSLPLLIALIYTHNTLGSLNI 176
>gi|30725877 G protein-coupled receptor 180 precursor [Homo sapiens]
Length = 440
Score = 29.6 bits (65), Expect = 4.4
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 215 HPLAWILLLSLIVCVSTQINY-LNRALDIFNTSIVTPIYYV--------FFTTSVLTCSA 265
H LA ILL+ L +C++ + L + + + +++ Y F VL C +
Sbjct: 319 HNLAGILLIVLRICLALSLGCGLYQIITVERSTLKREFYITFAKGCILWFLCHPVLACIS 378
Query: 266 ILFKEWQDMPV--DDVIGTLSGFFTIIVGIFLLHA--FKDVSFSLASLPVSFRKDEKA 319
++F ++Q V VI S I+ +FL H+ ++ S S +LP++ K+
Sbjct: 379 VIFSDYQRDKVITIGVILCQSVSMVILYRLFLSHSLYWEVSSLSSVTLPLTISSGHKS 436
>gi|53828674 olfactory receptor, family 13, subfamily C, member 4
[Homo sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 5.7
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 177 NILVYITICSVIG-AFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINY 235
N +VY+ + SV + ++ +A++ F G ++ H L IL + + C +N
Sbjct: 137 NKVVYVLLTSVSWLSGGINSTVQTSLAMRWPFCGNNIINHFLCEILAVLKLACSDISVNI 196
Query: 236 LNRALDIFNTSIVTPIYYVFFT 257
+ A+ +V P+ +FF+
Sbjct: 197 VTLAVSNI-AFLVLPLLVIFFS 217
>gi|189027121 solute carrier family 35, member F1 [Homo sapiens]
Length = 408
Score = 28.9 bits (63), Expect = 7.5
Identities = 60/266 (22%), Positives = 104/266 (39%), Gaps = 39/266 (14%)
Query: 43 SMRAGQGGHAYLKEWLWWA----GLLSMGAGEVANFAAYAFAPATLVTPLGALSVLVSAI 98
++R G+ + WW GL+ + A + AY + T + L + V +
Sbjct: 113 AVRQGEENLLAILRRRWWKYMILGLIDLEANYLV-VKAYQYTTLTSIQLLDCFVIPVVIL 171
Query: 99 LSSYFLNERLNLHGKIGCLLSILGSTVMVIHAPKEEEIETLNEMSHKLGDPGFVVFATLV 158
LS +FL R IG ++ ILG MV + E + +GD + ATL
Sbjct: 172 LSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQGAGE-NKLVGDLLVLGGATLY 230
Query: 159 VIVALILIFVVGPRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLA 218
I + +++ L + +IG F + G+ +AI E K +L+ P
Sbjct: 231 GISNVWEEYII-------RTLSRVEFLGMIGLFG-AFFSGIQLAIME---HKELLKVPWD 279
Query: 219 W---ILLLSLIVCVSTQINYL-----NRALDIFNTSIVTPIYYVFFTTSVLTCSAILFK- 269
W +L + C+ +++ + N S++T Y F C LF
Sbjct: 280 WQIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLF------CGLFLFHY 333
Query: 270 EWQDMPVDDVIGTLSGFFTIIVGIFL 295
++ + L FFTI++G+ L
Sbjct: 334 KFSGL-------YLLSFFTILIGLVL 352
>gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
Length = 350
Score = 28.9 bits (63), Expect = 7.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 71 VANFAAYAFAPATLVTPLGALSVLVSAILSSYFLNERLNLHGKIGCLLSILG 122
+A+F+ A A V LG L+V+ + ILS RL+ +G L++ G
Sbjct: 270 LASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLSALSYVGIALTLSG 321
>gi|4504993 leukemia inhibitory factor receptor precursor [Homo
sapiens]
Length = 1097
Score = 28.5 bits (62), Expect = 9.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 248 VTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGF 286
+ PI FT + +IL K W+D+PV+++ G L G+
Sbjct: 722 LAPIVAPNFTVEDTSADSILVK-WEDIPVEELRGFLRGY 759
>gi|189083786 leukemia inhibitory factor receptor precursor [Homo
sapiens]
Length = 1097
Score = 28.5 bits (62), Expect = 9.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 248 VTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGF 286
+ PI FT + +IL K W+D+PV+++ G L G+
Sbjct: 722 LAPIVAPNFTVEDTSADSILVK-WEDIPVEELRGFLRGY 759
>gi|37693993 nucleoside diphosphate kinase 3 [Homo sapiens]
Length = 169
Score = 28.5 bits (62), Expect = 9.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 275 PVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASLPVSFRKDE 317
P D GT+ G F I VG L+H V + + + FR DE
Sbjct: 113 PADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADE 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,541,804
Number of Sequences: 37866
Number of extensions: 513186
Number of successful extensions: 1526
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1500
Number of HSP's gapped (non-prelim): 29
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.