Guide to the Human Genome
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Name: PPP1CA Sequence: fasta or formatted (341aa) NCBI GI: 56790945
Description:

protein phosphatase 1, catalytic subunit, alpha isoform 3

Referenced in:

Myosin
Serine / Threonine Protein Phosphatases

Other entries for this name:
alt prot [330aa] protein phosphatase 1, catalytic subunit, alpha isoform 1
alt prot [286aa] protein phosphatase 1, catalytic subunit, alpha isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         16           2
 C cysteine            4.1         14           2
 D aspartate           6.7         23           1
 E glutamate           6.2         21           1
 F phenylalanine       5.6         19           2
 G glycine             8.2         28           2
 H histidine           2.1          7           1
 I isoleucine          5.9         20           2
 K lysine              6.5         22           2
 L leucine            11.7         40           3
 M methionine          1.8          6           2
 N asparagine          4.4         15           1
 P proline             5.6         19           2
 Q glutamine           3.8         13           1
 R arginine            5.6         19           2
 S serine              5.6         19           1
 T threonine           2.9         10           1
 V valine              4.1         14           2
 W tryptophan          0.9          3           1
 Y tyrosine            3.8         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 1, catalytic subunit, alpha isof... 
PPP1CA                0.952   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CC                0.850   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP1CB                0.830   protein phosphatase 1, catalytic subunit, beta isofo...
PPP1CB                0.830   protein phosphatase 1, catalytic subunit, beta isofor...
PPP1CA                0.797   protein phosphatase 1, catalytic subunit, alpha isof...
PPP2CB                0.400   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.400   protein phosphatase 2, catalytic subunit, beta isofor...
PPP2CA                0.392   protein phosphatase 2, catalytic subunit, alpha isofo...
PPP4C                 0.390   protein phosphatase 4, catalytic subunit 
PPP6C                 0.352   protein phosphatase 6, catalytic subunit isoform b [H...
PPP6C                 0.342   protein phosphatase 6, catalytic subunit isoform a ...
PPP6C                 0.297   protein phosphatase 6, catalytic subunit isoform c ...
PPP3CA                0.292   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.292   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP3CA                0.289   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CC                0.286   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP3CB                0.285   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.285   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.285   protein phosphatase 3, catalytic subunit, beta isofo...
PPP5C                 0.269   protein phosphatase 5, catalytic subunit 
PPEF1                 0.174   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.160   protein phosphatase with EF hand calcium-binding dom...
LOC100128362          0.141   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.141   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.141   PREDICTED: similar to protein phosphatase 2, cataly...
PPEF2                 0.135   serine/threonine protein phosphatase with EF-hand mo...
PPEF1                 0.113   protein phosphatase with EF hand calcium-binding dom...
SPATA5L1              0.007   spermatogenesis associated 5-like 1 
ZNF317                0.007   zinc finger protein 317 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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