Guide to the Human Genome
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Name: LOC100128362 Sequence: fasta or formatted (384aa) NCBI GI: 239752750
Description:

PREDICTED: similar to protein phosphatase 2, catalytic subunit, alpha

Not currently referenced in the text

Other entries for this name:
alt prot {254aa} PREDICTED: similar to protein phosphatase 2, catalytic subunit, a...
alt prot {254aa} PREDICTED: similar to protein phosphatase 2, catalytic subunit, a...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         37           3
 C cysteine            3.4         13           1
 D aspartate           4.2         16           2
 E glutamate           4.7         18           2
 F phenylalanine       1.6          6           1
 G glycine             9.4         36           3
 H histidine           5.5         21           2
 I isoleucine          3.4         13           1
 K lysine              2.6         10           1
 L leucine             9.1         35           3
 M methionine          2.3          9           1
 N asparagine          2.6         10           1
 P proline             8.1         31           2
 Q glutamine           2.9         11           1
 R arginine            8.6         33           3
 S serine              8.9         34           3
 T threonine           3.9         15           1
 V valine              5.7         22           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.6         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to protein phosphatase 2, cataly... 
LOC100128362          0.635   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.635   PREDICTED: similar to protein phosphatase 2, cataly...
PPP2CA                0.323   protein phosphatase 2, catalytic subunit, alpha isofo...
PPP2CB                0.320   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.320   protein phosphatase 2, catalytic subunit, beta isofor...
PPP4C                 0.236   protein phosphatase 4, catalytic subunit 
PPP6C                 0.220   protein phosphatase 6, catalytic subunit isoform c ...
PPP6C                 0.204   protein phosphatase 6, catalytic subunit isoform b [H...
PPP6C                 0.202   protein phosphatase 6, catalytic subunit isoform a ...
PPP1CA                0.125   protein phosphatase 1, catalytic subunit, alpha isof...
PPP1CC                0.124   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP1CA                0.124   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CB                0.121   protein phosphatase 1, catalytic subunit, beta isofo...
PPP1CB                0.121   protein phosphatase 1, catalytic subunit, beta isofor...
PPP1CA                0.107   protein phosphatase 1, catalytic subunit, alpha isof...
PPP3CA                0.106   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.106   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.106   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP3CB                0.099   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.099   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.099   protein phosphatase 3, catalytic subunit, beta isofo...
PPP3CC                0.094   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP5C                 0.080   protein phosphatase 5, catalytic subunit 
PPEF1                 0.039   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.032   protein phosphatase with EF hand calcium-binding dom...
PPEF1                 0.030   protein phosphatase with EF hand calcium-binding dom...
PPEF2                 0.024   serine/threonine protein phosphatase with EF-hand mo...
FBF1                  0.022   Fas (TNFRSF6) binding factor 1 
LOC440829             0.017   PREDICTED: transmembrane protein 46-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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