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Search of human proteins with 55769533
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 675 0.0
gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens] 61 1e-09
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 58 1e-08
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 58 1e-08
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 58 1e-08
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 52 6e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 52 8e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 52 1e-06
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 52 1e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 51 1e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 50 4e-06
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 49 5e-06
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 49 8e-06
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 49 8e-06
gi|117938759 GNAS complex locus XLas [Homo sapiens] 48 1e-05
gi|91208420 bassoon protein [Homo sapiens] 48 1e-05
gi|122937321 UNC homeobox [Homo sapiens] 48 1e-05
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 48 1e-05
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 48 1e-05
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 48 1e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 48 1e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 47 2e-05
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 47 2e-05
gi|171543895 ataxin 2 [Homo sapiens] 47 2e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 3e-05
gi|32483397 dopamine receptor D4 [Homo sapiens] 46 4e-05
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 46 4e-05
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 46 5e-05
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 46 5e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 45 7e-05
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 675 bits (1741), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT 60
MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
Sbjct: 1 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT 60
Query: 61 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA 120
PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
Sbjct: 61 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA 120
Query: 121 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD 180
PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
Sbjct: 121 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD 180
Query: 181 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR 240
EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
Sbjct: 181 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR 240
Query: 241 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI 300
YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
Sbjct: 241 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI 300
Query: 301 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR 340
GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
Sbjct: 301 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR 340
>gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens]
Length = 186
Score = 61.2 bits (147), Expect = 1e-09
Identities = 54/165 (32%), Positives = 75/165 (45%), Gaps = 35/165 (21%)
Query: 18 DFLEEWKAKREKMRAKQNPPGPAPPG--------------GGSSDAAGKPPAGALGTPAA 63
DF E+ +R + R +Q PGP PG G A+ +PP GAL + A
Sbjct: 15 DFSEQ--RRRLERRRRQVEPGPRGPGMGQQPLQPGSPGRGAGRQRASRQPPCGALTSLQA 72
Query: 64 A---AANELNNNLPGGAPAAPAVPGPGGVNCAV-GSAMLTRAAPGPRRSEDEPPAASASA 119
A + +L G A P P GVNCAV +PGP++ ++EP A +
Sbjct: 73 APQQPPGSAHTSLQGSPLALHLPPPPRGVNCAVCRPGYADPGSPGPQQPDEEPRATARGY 132
Query: 120 APPPQRDEEEPDGVPEKGKSS--GP------SARKGKGQIEKRKL 156
E+E DG PEK KSS GP A G+ ++EKR++
Sbjct: 133 -------EKEQDGAPEKCKSSELGPPCQERLGAEDGEMEMEKRQV 170
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 58.2 bits (139), Expect = 1e-08
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 24/226 (10%)
Query: 127 EEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKE 186
E E +G + + G + K E+R+ REKRRSTGV + DE E ++ E
Sbjct: 730 ENEREGEKREEEKEGEDKSQPKSIRERRRPREKRRSTGVSF--WTQDSDENEQEQQSDTE 787
Query: 187 RKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSE-EDVSSRYSRTD 245
TQ ++I + G Y ++ GR S + + E + SSR + D
Sbjct: 788 EGSNKKETQTDSISRYETSSTSAGDRY------DSLLGRSGSYSYLEERKPYSSRLEKDD 841
Query: 246 RSGFPRYNRDANVSGTLVSSSTLEKKIE----DLEKEVVRERQENLRLVRLMQDK----- 296
+ F + + + + +E L+ E +RQE L++ +
Sbjct: 842 STDFKKLYEQILAENEKLKAQLHDTNMELTDLKLQLEKATQRQERFADRSLLEMEKRERR 901
Query: 297 --EEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR 340
E I +++EE+ + L D++ +N++LK EN L++V+ +L++
Sbjct: 902 ALERRISEMEEELKM----LPDLKADNQRLKDENGALIRVISKLSK 943
Score = 35.4 bits (80), Expect = 0.074
Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 34/190 (17%)
Query: 78 PAAPAVP-GPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEK 136
P A +P P VN A + LT G S E S P + +E E +
Sbjct: 540 PTAVTIPVAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESE-----SQ 594
Query: 137 GKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKERKREDAITQQ 196
K+ AR+ + + L + + + + + E E++E ++E++++D Q+
Sbjct: 595 RKARSRQARQSRRSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQE 654
Query: 197 NTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDA 256
++E E++ +YSRT + RY +
Sbjct: 655 EKKESETSR----------------------------EDEYKQKYSRTYDETYQRYRPVS 686
Query: 257 NVSGTLVSSS 266
S T SSS
Sbjct: 687 TSSSTTPSSS 696
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 58.2 bits (139), Expect = 1e-08
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 24/226 (10%)
Query: 127 EEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKE 186
E E +G + + G + K E+R+ REKRRSTGV + DE E ++ E
Sbjct: 817 ENEREGEKREEEKEGEDKSQPKSIRERRRPREKRRSTGVSF--WTQDSDENEQEQQSDTE 874
Query: 187 RKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSE-EDVSSRYSRTD 245
TQ ++I + G Y ++ GR S + + E + SSR + D
Sbjct: 875 EGSNKKETQTDSISRYETSSTSAGDRY------DSLLGRSGSYSYLEERKPYSSRLEKDD 928
Query: 246 RSGFPRYNRDANVSGTLVSSSTLEKKIE----DLEKEVVRERQENLRLVRLMQDK----- 296
+ F + + + + +E L+ E +RQE L++ +
Sbjct: 929 STDFKKLYEQILAENEKLKAQLHDTNMELTDLKLQLEKATQRQERFADRSLLEMEKRERR 988
Query: 297 --EEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR 340
E I +++EE+ + L D++ +N++LK EN L++V+ +L++
Sbjct: 989 ALERRISEMEEELKM----LPDLKADNQRLKDENGALIRVISKLSK 1030
Score = 35.4 bits (80), Expect = 0.074
Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 34/190 (17%)
Query: 78 PAAPAVP-GPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEK 136
P A +P P VN A + LT G S E S P + +E E +
Sbjct: 627 PTAVTIPVAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESE-----SQ 681
Query: 137 GKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKERKREDAITQQ 196
K+ AR+ + + L + + + + + E E++E ++E++++D Q+
Sbjct: 682 RKARSRQARQSRRSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQE 741
Query: 197 NTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDA 256
++E E++ +YSRT + RY +
Sbjct: 742 EKKESETSR----------------------------EDEYKQKYSRTYDETYQRYRPVS 773
Query: 257 NVSGTLVSSS 266
S T SSS
Sbjct: 774 TSSSTTPSSS 783
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit 12A
isoform a [Homo sapiens]
Length = 1030
Score = 58.2 bits (139), Expect = 1e-08
Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 24/226 (10%)
Query: 127 EEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKE 186
E E +G + + G + K E+R+ REKRRSTGV + DE E ++ E
Sbjct: 817 ENEREGEKREEEKEGEDKSQPKSIRERRRPREKRRSTGVSF--WTQDSDENEQEQQSDTE 874
Query: 187 RKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSE-EDVSSRYSRTD 245
TQ ++I + G Y ++ GR S + + E + SSR + D
Sbjct: 875 EGSNKKETQTDSISRYETSSTSAGDRY------DSLLGRSGSYSYLEERKPYSSRLEKDD 928
Query: 246 RSGFPRYNRDANVSGTLVSSSTLEKKIE----DLEKEVVRERQENLRLVRLMQDK----- 296
+ F + + + + +E L+ E +RQE L++ +
Sbjct: 929 STDFKKLYEQILAENEKLKAQLHDTNMELTDLKLQLEKATQRQERFADRSLLEMEKRERR 988
Query: 297 --EEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR 340
E I +++EE+ + L D++ +N++LK EN L++V+ +L++
Sbjct: 989 ALERRISEMEEELKM----LPDLKADNQRLKDENGALIRVISKLSK 1030
Score = 35.4 bits (80), Expect = 0.074
Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 34/190 (17%)
Query: 78 PAAPAVP-GPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEK 136
P A +P P VN A + LT G S E S P + +E E +
Sbjct: 627 PTAVTIPVAPTVVNAAASTTTLTTTTAGTVSSTTEVRERRRSYLTPVRDEESE-----SQ 681
Query: 137 GKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKERKREDAITQQ 196
K+ AR+ + + L + + + + + E E++E ++E++++D Q+
Sbjct: 682 RKARSRQARQSRRSTQGVTLTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQE 741
Query: 197 NTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDA 256
++E E++ +YSRT + RY +
Sbjct: 742 EKKESETSR----------------------------EDEYKQKYSRTYDETYQRYRPVS 773
Query: 257 NVSGTLVSSS 266
S T SSS
Sbjct: 774 TSSSTTPSSS 783
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 52.4 bits (124), Expect = 6e-07
Identities = 36/114 (31%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 35 NPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPG-PGGVNCAV 93
NP GP+P GG PP G P G P P PG P G
Sbjct: 35 NPQGPSPQGGNKPQGPPPPPGKPQGPPPQG----------GNKPQGPPPPGKPQGPPPQG 84
Query: 94 GSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
+ R+ PG + + PP PPPQ + P G P GK GP A+ G
Sbjct: 85 DKSRSPRSPPG--KPQGPPPQGGKPQGPPPQGGNK-PQGPPPPGKPQGPPAQGG 135
Score = 37.4 bits (85), Expect = 0.019
Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 17/107 (15%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
P GP PP GG+ PP G PA + + P G P P P G N
Sbjct: 107 PQGP-PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGP--PQQEGNN----- 158
Query: 96 AMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGP 142
+ P P + P A PP + P P+ G+ S P
Sbjct: 159 ---PQGPPPPAGGNPQQPQA------PPAGQPQGPPRPPQGGRPSRP 196
Score = 31.2 bits (69), Expect = 1.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 35 NPPGPAPPGGGSSDAAGKPPAG 56
NP GP PP GG+ PPAG
Sbjct: 158 NPQGPPPPAGGNPQQPQAPPAG 179
Score = 30.4 bits (67), Expect = 2.4
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 104 GPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQ 150
G + + PP PPPQ + P G P GK GP + K +
Sbjct: 43 GGNKPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKPQGPPPQGDKSR 88
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 52.0 bits (123), Expect = 8e-07
Identities = 36/124 (29%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 29 KMRAKQNPPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPG 85
K R+ ++PPG PP GG+ PP G P N+ P G P P G
Sbjct: 169 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Query: 86 PGGVNCAVGSAMLTRAAP--GPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPS 143
A + P G + + PP PPPQ +P G P GK GP
Sbjct: 229 DNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ-GGNKPQGPPPPGKPQGPP 287
Query: 144 ARKG 147
+ G
Sbjct: 288 PQGG 291
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 28 EKMRAKQNPPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP 84
+K R+ ++PPG PP GG+ PP G P N+ P G P P
Sbjct: 106 DKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQ 165
Query: 85 GPGGVNCAVGSAMLTRAAP--GPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGP 142
G + + P G + + PP PPPQ +P G P GK GP
Sbjct: 166 GDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ-GGNKPQGPPPPGKPQGP 224
Score = 48.5 bits (114), Expect = 8e-06
Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 29 KMRAKQNPPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPG 85
K ++ ++PPG PP GG+ PP G P N+ P G P P G
Sbjct: 231 KSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 290
Query: 86 PGGVNCAVGSAMLTRAAP--GPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPS 143
+ + P G + + PP PPPQ +P G P GK GP
Sbjct: 291 GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ-GGNKPQGPPPPGKPQGPP 349
Query: 144 ARKG 147
+ G
Sbjct: 350 PQGG 353
Score = 45.8 bits (107), Expect = 5e-05
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 29 KMRAKQNPPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPG 85
K R+ ++PPG PP GG+ PP G P N+ P G P P P
Sbjct: 293 KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP--PP 350
Query: 86 PGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGP 142
GG + R+ PG + + + PPP + P G+ GP
Sbjct: 351 QGG-----SKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 402
Score = 42.7 bits (99), Expect = 5e-04
Identities = 36/126 (28%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 35 NPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAV---PGPGGVNC 91
NP G P GG PP G P N P G P P P P G N
Sbjct: 35 NPQGAPPQGGNKPQGPPSPPGKPQGPPPQ------GGNQPQGPPPPPGKPQGPPPQGGNK 88
Query: 92 AVGSAMLTRAAPGPRRSEDEPPAASASAAP---------PPQRDEEEPDG-VPEKGKSSG 141
G P P + + PP S +P PP + +P G P GK G
Sbjct: 89 PQG-------PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 141
Query: 142 PSARKG 147
P + G
Sbjct: 142 PPPQGG 147
Score = 42.4 bits (98), Expect = 6e-04
Identities = 33/116 (28%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
P GP PP GG+ PP G P + P P P P P G N G
Sbjct: 78 PQGP-PPQGGNKPQGPPPPGKPQGPPPQGD----KSRSPRSPPGKPQGPPPQGGNQPQGP 132
Query: 96 AMLTRAAPGPR----RSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
GP PP PPPQ D + GK GP + G
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGG 188
Score = 42.0 bits (97), Expect = 8e-04
Identities = 31/113 (27%), Positives = 36/113 (31%), Gaps = 22/113 (19%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP-GPGGVNCAVG 94
P GP P GG S ++ PP G P N P G P P P GP
Sbjct: 283 PQGPPPQGGSKSRSSRSPPGKPQGPPPQ------GGNQPQGPPPPPGKPQGP-------- 328
Query: 95 SAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
P PP PPPQ + GK GP ++G
Sbjct: 329 -------PPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEG 374
Score = 33.5 bits (75), Expect = 0.28
Identities = 27/98 (27%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 54 PAGALGTPAAAAANELNNNLPGGAPAAPAVP-GPGGVNCAVGSAMLTRAAPGPRRSEDEP 112
P+ G P A N P G P+ P P GP G + + P
Sbjct: 29 PSLIAGNPQGAPPQ--GGNKPQGPPSPPGKPQGP--------------PPQGGNQPQGPP 72
Query: 113 PAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQ 150
P PPPQ + P G P GK GP + K +
Sbjct: 73 PPPGKPQGPPPQGGNK-PQGPPPPGKPQGPPPQGDKSR 109
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 51.6 bits (122), Expect = 1e-06
Identities = 47/150 (31%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 38 GPAPPGGGSSDAAGKPPAGALGTPAAAAANELNN-----NLPGGAPAAPAVPGPGGVNCA 92
GPA P G + +G +G P AN L LPG A AP +PGP G+
Sbjct: 274 GPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA-GAPGLPGPRGIPGP 332
Query: 93 VGSAMLTRA-----APGPRRSEDE-----PPAASASAAPPPQRDEEEPDGVPEKGKSSGP 142
VG+A T A PGP S+ E P ++ PP EE G + S+GP
Sbjct: 333 VGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGP 392
Query: 143 SARKG-KGQIEKRKLREKRRSTGVVNIPAA 171
G +G R L GV+ P +
Sbjct: 393 PGPPGLRGSPGSRGLPGADGRAGVMGPPGS 422
Score = 40.8 bits (94), Expect = 0.002
Identities = 34/117 (29%), Positives = 39/117 (33%), Gaps = 26/117 (22%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
Q PPGP GG + P G G P P G PG G++
Sbjct: 531 QGPPGPQGVQGGKGEQGPPGPPGFQGLPG-----------PSGPAGEVGKPGERGLHGEF 579
Query: 94 GSAMLTRAAPGPR--RSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGK 148
G PGP R E PP S +A P P G P GP KG+
Sbjct: 580 G-------LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPP------GPDGNKGE 623
Score = 39.3 bits (90), Expect = 0.005
Identities = 29/92 (31%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
Query: 31 RAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVN 90
R + PGPA G PAG +G+ G P P PGP G
Sbjct: 222 RGRVGAPGPAGARGSDGSVGPVGPAGPIGS--------------AGPPGFPGAPGPKGEI 267
Query: 91 CAVGSAMLTRAAPGPRRSEDEPPAASASAAPP 122
AVG+A A P R E P S PP
Sbjct: 268 GAVGNA--GPAGPAGPRGEVGLPGLSGPVGPP 297
Score = 37.4 bits (85), Expect = 0.019
Identities = 32/117 (27%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 31 RAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVN 90
R ++ PPGP PG D PP G P P PG GG
Sbjct: 41 RGERGPPGP--PGRDGEDGPTGPP---------------------GPPGPPGPPGLGGNF 77
Query: 91 CAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
A PGP A+ AP PQ + P G P + +GP+ +G
Sbjct: 78 AAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQ-GFQGPAGEPGEPGQTGPAGARG 133
Score = 37.0 bits (84), Expect = 0.025
Identities = 35/124 (28%), Positives = 43/124 (34%), Gaps = 19/124 (15%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALG--TPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
P GPA P G + PAG G PA AA GA GP G N V
Sbjct: 701 PAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQP-------GAKGERGAKGPKGENGVV 753
Query: 94 GSAMLTRAA--------PGP--RRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPS 143
G AA PGP R + PP + + P G+ GP+
Sbjct: 754 GPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPA 813
Query: 144 ARKG 147
++G
Sbjct: 814 GKEG 817
Score = 36.6 bits (83), Expect = 0.033
Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 32/146 (21%)
Query: 31 RAKQNPPGPA-----PPGGGSSDAAGKP----------------PAGALGTP----AAAA 65
+ +Q PPGP P G + GKP P G G P AA
Sbjct: 543 KGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGP 602
Query: 66 ANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQR 125
+ + P G P G GV AVG+A GP P A+ P +
Sbjct: 603 TGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA-------GPSGPSGLPGERGAAGIPGGKG 655
Query: 126 DEEEPDGVPEKGKSSGPSARKGKGQI 151
++ EP E G AR G +
Sbjct: 656 EKGEPGLRGEIGNPGRDGARGAPGAV 681
Score = 35.0 bits (79), Expect = 0.096
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 36 PPGP-APPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCA-- 92
P GP PPG S G PP G G P AA P G P PGP G
Sbjct: 764 PAGPNGPPGPAGSRGDGGPP-GMTGFPGAAGRTGPPG--PSGISGPPGPPGPAGKEGLRG 820
Query: 93 -------VGSAMLTRAAPGPRRSEDEPPAASASAAPPP 123
VG A P + ++ P+ A A PP
Sbjct: 821 PRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPP 858
Score = 32.7 bits (73), Expect = 0.48
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNL-PGGAPAAPAVPGPGGVN 90
P GP P G S A G GT A + P G P P PGP GV+
Sbjct: 1049 PAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGPPGVS 1104
Score = 31.6 bits (70), Expect = 1.1
Identities = 36/116 (31%), Positives = 42/116 (36%), Gaps = 22/116 (18%)
Query: 45 GSSDAAGKP-PAGALGTPA-AAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLT--- 99
G+ A G P PAGA G A AA P G+P GP G N G A
Sbjct: 676 GAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQP 735
Query: 100 -----RAAPGPRRSED-EPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKG 149
R A GP+ P AA P P+G P GP+ +G G
Sbjct: 736 GAKGERGAKGPKGENGVVGPTGPVGAAGP-----AGPNGPP------GPAGSRGDG 780
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 6/106 (5%)
Query: 45 GSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP-GPGGVNCAVGSAMLTRAAP 103
G A G P GA+G P A A PA PA P G G VG A A
Sbjct: 670 GRDGARGAP--GAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFA- 726
Query: 104 GPRRSEDEPPAASASAAPPPQRDE--EEPDGVPEKGKSSGPSARKG 147
GP + +P A A P+ + P G +GP+ G
Sbjct: 727 GPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPG 772
Score = 29.6 bits (65), Expect = 4.0
Identities = 39/138 (28%), Positives = 47/138 (34%), Gaps = 14/138 (10%)
Query: 36 PPGPAPPGG--GSSDAAGKPPA-GALGTPAAAAA----NELNNNLPGGAPAAPAVPGPGG 88
PPG P G G+ G P + G G P A A L P GA P G G
Sbjct: 857 PPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPG 916
Query: 89 VNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGK 148
VN A G A PG D PP P + + P + G + P
Sbjct: 917 VNGAPGEAG-RDGNPG----NDGPPGRDGQ--PGHKGERGYPGNIGPVGAAGAPGPHGPV 969
Query: 149 GQIEKRKLREKRRSTGVV 166
G K R + +G V
Sbjct: 970 GPAGKHGNRGETGPSGPV 987
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 51.6 bits (122), Expect = 1e-06
Identities = 40/130 (30%), Positives = 51/130 (39%), Gaps = 23/130 (17%)
Query: 36 PPGPA-----PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVN 90
PP P PP GG+ PP G P N+ ++ P P P P P G N
Sbjct: 93 PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQ--SHRPPPPPGKPERPPPQGGN 150
Query: 91 CAVGSAMLTRAAPGPRRSEDEPP-----AASASAAP-----PPQRDEEEPDGVPEKGKSS 140
+ G P P + E PP + SA + P PPQ++ +P G P GK
Sbjct: 151 QSQGPP------PHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQ 204
Query: 141 GPSARKGKGQ 150
GP G Q
Sbjct: 205 GPPPAGGNPQ 214
Score = 48.5 bits (114), Expect = 8e-06
Identities = 35/117 (29%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
P GP P GG S PP G P P P P P P G N + G+
Sbjct: 57 PQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQG---PPPHPGKPERPPPQGGNQSQGT 113
Query: 96 ----AMLTRAAP-GPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
R P G +S PP PPPQ + P GK GP ++G
Sbjct: 114 PPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEG 170
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/114 (27%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 36 PPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCA 92
PPG PP GG+ PP G P N+ P P P P P N +
Sbjct: 116 PPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQG--PPPHPGKPEGPPPQEGNKS 173
Query: 93 VGSAMLTRAAPGPRRSEDE----PPAASASAAPPPQRDEEEPDGVPEKGKSSGP 142
+ GP + E PP PPP + P GK GP
Sbjct: 174 RSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGP 227
Score = 33.1 bits (74), Expect = 0.37
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 29 KMRAKQNPPGP--APPGGGSSDAAGKPPAGALGTPAAAAANELNNNLP-GGAPAAPAVPG 85
K R+ ++PPG PP + G PP G P A N P G P P P
Sbjct: 172 KSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPP 231
Query: 86 PGG 88
GG
Sbjct: 232 QGG 234
Score = 31.2 bits (69), Expect = 1.4
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
P GP PP G+ + + P G P N+ P G P P G G+
Sbjct: 162 PEGP-PPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAG--------GN 212
Query: 96 AMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEP 130
+A P + + PP P P + ++ P
Sbjct: 213 PQQPQAPPA-GKPQGPPPPPQGGRPPRPAQGQQPP 246
Score = 28.5 bits (62), Expect = 9.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 100 RAAPGPRRSEDEPP-AASASAAPPPQRDEEEPDGVPEKG--KSSGPSARKGK 148
R P P + + PP + S PPP + P+G P +G +S GP GK
Sbjct: 49 RPPPPPGKPQGPPPQGGNQSQGPPPPPGK--PEGRPPQGGNQSQGPPPHPGK 98
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 51.2 bits (121), Expect = 1e-06
Identities = 36/115 (31%), Positives = 42/115 (36%), Gaps = 22/115 (19%)
Query: 33 KQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCA 92
K+ PPGPA P G + K AG G P P G AP PGP G+
Sbjct: 1391 KRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG--------PIGPQGAPGKPGPDGL--- 1439
Query: 93 VGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
R PGP + P + P P P G+P SGP KG
Sbjct: 1440 -------RGIPGPVGEQGLPGSPGPDGPPGPM----GPPGLPGLKGDSGPKGEKG 1483
Score = 42.0 bits (97), Expect = 8e-04
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 6/116 (5%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAA-ANELNNNLPGGAPAAPAVPGPGGVNCAVG 94
PPGP P G + P G +G P A E G P PGP G G
Sbjct: 1253 PPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKG 1312
Query: 95 SAMLTRAA--PGPRRSE-DEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
+ + AA PGP+ D+ P S P + P G P GP KG
Sbjct: 1313 ESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFP--GDPGPPGEPGPAGQDGPPGDKG 1366
Score = 40.4 bits (93), Expect = 0.002
Identities = 39/142 (27%), Positives = 50/142 (35%), Gaps = 28/142 (19%)
Query: 31 RAKQNPPGPAPPGGGSSDAAGKP-PAGALGTPAAAAANEL----NNNLPGGAPAAP---- 81
+ +Q PPGP P G G+P P+GA G P L + P G P P
Sbjct: 1173 KGEQGPPGPTGPQG----PIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVG 1228
Query: 82 --AVPGPGGVNCAVGSA--MLTRAAPGPRRSEDEPPAASASAAP-----------PPQRD 126
+PGP G G M PGPR P A P +
Sbjct: 1229 LQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPG 1288
Query: 127 EEEPDGVPEKGKSSGPSARKGK 148
E G+P +G GP +G+
Sbjct: 1289 EAGEPGLPGEGGPPGPKGERGE 1310
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/118 (27%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
PPGP G D P G G P L P G P P V G G G+
Sbjct: 653 PPGPPGDDGERGDDGEVGPRGLPGEPGPRGL--LGPKGPPGPPGPPGVTGMDGQPGPKGN 710
Query: 96 AMLTRAAPGPRRSEDEP-----PAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGK 148
+ + PGP + P P + PP ++ G+P + GP GK
Sbjct: 711 -VGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGK 767
Score = 38.1 bits (87), Expect = 0.011
Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 23/156 (14%)
Query: 2 ATGGYRTSSGLG--GSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALG 59
A G G+G G+ + E +A + + PPGP G ++ P+GA G
Sbjct: 1265 ADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESG---PSGAAG 1321
Query: 60 TPAAAA--ANELNNNLPG-----GAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEP 112
P ++ PG G P P PGP G + P + +D
Sbjct: 1322 PPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQD-----------GPPGDKGDDGE 1370
Query: 113 PAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGK 148
P + S P + P G +GP R+G+
Sbjct: 1371 PGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGE 1406
Score = 37.4 bits (85), Expect = 0.019
Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 19/121 (15%)
Query: 30 MRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGV 89
++ + PPGP P G + AG +G P G P PGP G
Sbjct: 1073 LKGNEGPPGPPGPAGSPGERGPAGAAGPIGIP--------------GRPGPQGPPGPAGE 1118
Query: 90 NCAVGSAMLTRAAPGPRRSEDEP---PAASASAAPPPQRDEEEPDGVPEKGKSSGPSARK 146
A G P R P P + PP + ++ G P + S G +
Sbjct: 1119 KGAPGEK--GPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQ 1176
Query: 147 G 147
G
Sbjct: 1177 G 1177
Score = 35.4 bits (80), Expect = 0.074
Identities = 41/140 (29%), Positives = 51/140 (36%), Gaps = 14/140 (10%)
Query: 34 QNPPGP-APPGGGSSDAAGKP-PAGALGTPAAAAANELNNNLPG--GAPAAPAVPGPGGV 89
+ PPGP PPG D G+P P G +G N PG G P GP G
Sbjct: 687 KGPPGPPGPPGVTGMD--GQPGPKGNVGPQGEPGPPGQQGN-PGAQGLPGPQGAIGPPGE 743
Query: 90 NCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKG 149
+G L PG D PP PP ++ + P G +G P R KG
Sbjct: 744 KGPLGKPGLP-GMPGA----DGPPGHPGKEGPPGEKGGQGPPG--PQGPIGYPGPRGVKG 796
Query: 150 QIEKRKLREKRRSTGVVNIP 169
R L+ + G P
Sbjct: 797 ADGIRGLKGTKGEKGEDGFP 816
Score = 35.4 bits (80), Expect = 0.074
Identities = 34/128 (26%), Positives = 41/128 (32%), Gaps = 17/128 (13%)
Query: 31 RAKQNPPGPAPPGGGSSDAAGKPP---AGALGTPAAAAANELNNNLPGGAPAAPAVPGPG 87
R + P GP GG + D P G LG P P G+ P PG
Sbjct: 837 RGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYP--GRQGPKGSIGFPGFPGAN 894
Query: 88 GVNCAVGSAMLTRAAPGPR--------RSEDEPPAASASAAPPPQRDEEEPDGVPEKGKS 139
G G T PGPR R E P + P + P G P +
Sbjct: 895 GEKGGRG----TPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGP 950
Query: 140 SGPSARKG 147
+GP G
Sbjct: 951 NGPQGPTG 958
Score = 32.0 bits (71), Expect = 0.82
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPG--GAPAAPAVPGPGG 88
+ PPGP P G P G +G P PG G P A +PGP G
Sbjct: 468 EGPPGPEGPAGLPGPPGTMGPTGQVGDPG-------ERGPPGRPGLPGADGLPGPPG 517
Score = 32.0 bits (71), Expect = 0.82
Identities = 31/131 (23%), Positives = 41/131 (31%), Gaps = 6/131 (4%)
Query: 25 AKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAA-ANELNNNLPGGAPAAPAV 83
A R+ ++ PGPA P G + K G G + E P G
Sbjct: 1131 AGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQ 1190
Query: 84 PGPGGVNCAVG-----SAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGK 138
PGP G + G + GPR P P P ++ E V + G
Sbjct: 1191 PGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGP 1250
Query: 139 SSGPSARKGKG 149
P R G
Sbjct: 1251 PGPPGPRGPSG 1261
Score = 31.2 bits (69), Expect = 1.4
Identities = 35/117 (29%), Positives = 39/117 (33%), Gaps = 13/117 (11%)
Query: 37 PGPA-PPGGGS-----SDAAGKPPAGALGTPAAAAANELNNNL-PGGAPAAPAVPGPGGV 89
PGP PPG G D + P G G P A GA P GP G
Sbjct: 570 PGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGD 629
Query: 90 NCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDG-VPEKGKSSGPSAR 145
G A L PG + + P S PP E DG V +G P R
Sbjct: 630 RGFDGLAGL----PGEKGHRGD-PGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPR 681
Score = 29.6 bits (65), Expect = 4.0
Identities = 31/115 (26%), Positives = 37/115 (32%), Gaps = 33/115 (28%)
Query: 36 PPGP-APPG-----GGSSDAAGKPPAGALGT--PAAAAANELNNNLPG------------ 75
PPGP PPG G S K G +G P + + LPG
Sbjct: 1460 PPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQG 1519
Query: 76 --------GAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPP 122
G P P +PGP G A GS + P + E P PP
Sbjct: 1520 ITGPSGPIGPPGPPGLPGPPGPKGAKGS-----SGPTGPKGEAGHPGPPGPPGPP 1569
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 49.7 bits (117), Expect = 4e-06
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 9/129 (6%)
Query: 28 EKMRAKQNPPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP 84
+K R+ ++PPG PP GG+ PP G P N P G P P P
Sbjct: 85 DKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGP--P 142
Query: 85 GPGGVNCAVGSAMLTRAAPGPR---RSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSG 141
G + + S P P+ + + PP PPPQ ++P G P GK G
Sbjct: 143 PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ-GGKKPQGPPPPGKPQG 201
Query: 142 PSARKGKGQ 150
P + K +
Sbjct: 202 PPPQGDKSR 210
Score = 49.7 bits (117), Expect = 4e-06
Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 28 EKMRAKQNPPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP 84
+K R+ ++PPG PP GG+ PP G P + P G P P P
Sbjct: 146 DKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGP--P 203
Query: 85 GPGGVNCAVGSAMLTRAAPGPR---RSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSG 141
G + + S P P+ + + PP PPPQ + P G P GK G
Sbjct: 204 PQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKPQG 262
Query: 142 PSARKG 147
P A+ G
Sbjct: 263 PPAQGG 268
Score = 49.3 bits (116), Expect = 5e-06
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 10/118 (8%)
Query: 28 EKMRAKQNPPGPA---PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP 84
+K R+ Q+PPG PP GG+ PP G P N+ P G P P P
Sbjct: 207 DKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP--P 264
Query: 85 GPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGP 142
GG + R+ PG + + + PPP + P G+ GP
Sbjct: 265 AQGG-----SKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 317
Score = 47.0 bits (110), Expect = 2e-05
Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 35 NPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVG 94
NP GP+P GG PP G P N+ P G P P P G + +
Sbjct: 35 NPQGPSPQGGNKPQGPPPPPGKPQG-PPPQGGNKPQGPPPPGKPQGP--PPQGDKSRSPR 91
Query: 95 SAMLTRAAPGPR---RSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQ 150
S P P+ + + PP PPPQ P G P GK GP + K +
Sbjct: 92 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQ-GGNRPQGPPPPGKPQGPPPQGDKSR 149
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 49.3 bits (116), Expect = 5e-06
Identities = 42/143 (29%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
Q PG P G + K GA G P AA GAP PGP G +V
Sbjct: 367 QGRPGELGPQGPTGPPGAKGQEGAHGAPGAAG--------NPGAPGHVGAPGPSGPPGSV 418
Query: 94 GSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEP-----DGVPEKGKSSGPSARKGK 148
G+ L R PG E AA +P P +P G P KGK P R
Sbjct: 419 GAPGL-RGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSP 477
Query: 149 GQIEKRKLREKRRSTGVVNIPAA 171
G + R + G+ P +
Sbjct: 478 GLPGPLGTKGDRGAPGIPGSPGS 500
Score = 38.1 bits (87), Expect = 0.011
Identities = 37/127 (29%), Positives = 49/127 (38%), Gaps = 22/127 (17%)
Query: 36 PPGPAPPGG--GSSDAAGKP-------PAGALGTPAAAAANELN-------NNLPGGAPA 79
PPGP+ P G GS + G P PAG G + + ++N N+ P G P
Sbjct: 511 PPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPG 570
Query: 80 APAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASAS---AAPPPQRDEEEPDG-VPE 135
P +PG G G R ++ E PP A P + E DG V +
Sbjct: 571 LPGLPGFKGDKGVPGKP--GREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQ 628
Query: 136 KGKSSGP 142
KG P
Sbjct: 629 KGDQGHP 635
Score = 36.2 bits (82), Expect = 0.043
Identities = 36/133 (27%), Positives = 42/133 (31%), Gaps = 34/133 (25%)
Query: 33 KQNPPGPAPPGG--------GSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP 84
K+ PPGP P G G GKP G G P G P +P
Sbjct: 670 KEGPPGPQGPSGLPGIPGEEGKEGRDGKP--GPPGEP--------------GKAGEPGLP 713
Query: 85 GPGGVNCAVGSAMLT--RAAPGPR--------RSEDEPPAASASAAPPPQRDEEEPDGVP 134
GP G G T APGPR ++ P P + + P G P
Sbjct: 714 GPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPP 773
Query: 135 EKGKSSGPSARKG 147
K S G G
Sbjct: 774 GKNGSPGSPGEPG 786
Score = 34.7 bits (78), Expect = 0.13
Identities = 31/114 (27%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
PPG P G A P G G+P P G P +PG G G
Sbjct: 643 PPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPG-----PQGPSGLPGIPGEEGKEGRDGK 697
Query: 96 AMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKG 149
PGP EP A P P+ P G S P R G
Sbjct: 698 -------PGP---PGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESG 741
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/119 (26%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 30 MRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGV 89
M++ Q PGP P G P G G P GG GP G
Sbjct: 939 MKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPG-----------QGGLEGPSGPIGPKGE 987
Query: 90 NCAVGSAMLTRAAPG-PRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
A G APG R E PP P + P G+P +GP+ G
Sbjct: 988 RGAKGDP----GAPGVGLRGEMGPPGIPGQPGEPGYAKDGLP-GIPGPQGETGPAGHPG 1041
Score = 28.9 bits (63), Expect = 6.9
Identities = 31/127 (24%), Positives = 39/127 (30%), Gaps = 35/127 (27%)
Query: 27 REKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGP 86
+E + K GP P G P G G P G+P +P PGP
Sbjct: 748 QEGLPGKDGDTGPTGPQG---------PQGPRGPPGK-----------NGSPGSPGEPGP 787
Query: 87 GGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEK----GKSSGP 142
G GS + E+ P P E GVP K GK P
Sbjct: 788 SGTPGQKGS-----------KGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEP 836
Query: 143 SARKGKG 149
+ +G
Sbjct: 837 GFKGERG 843
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 48.5 bits (114), Expect = 8e-06
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 8 TSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAAN 67
T+S S++ ++R + A +PP A G G+ G G +G AA A
Sbjct: 3 TASSSSSSSSSQTPHPPSQRMRRSAAGSPPAVAAAGSGNGAGGG----GGVGCAPAAGAG 58
Query: 68 ELNN--------NLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASA 119
L L G+ +P P ++GS AA GP S PPAA+A A
Sbjct: 59 RLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSPTPPAAAAPA 118
Query: 120 APPPQRDEEEPDGVPEKGKSSGPSARKGKG----QIEKRKLREKRRSTGV 165
P R + P PE + S R+ G + +K K ++ R S+ +
Sbjct: 119 EQAP-RAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRTSSTI 167
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 48.5 bits (114), Expect = 8e-06
Identities = 39/121 (32%), Positives = 44/121 (36%), Gaps = 14/121 (11%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
Q PG P G + K GA G P AA GAP PGP G +V
Sbjct: 885 QGRPGELGPQGPTGPPGAKGQEGAHGAPGAAG--------NPGAPGHVGAPGPSGPPGSV 936
Query: 94 GSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEP-----DGVPEKGKSSGPSARKGK 148
G+ L R PG E AA +P P +P G P KGK P R
Sbjct: 937 GAPGL-RGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSP 995
Query: 149 G 149
G
Sbjct: 996 G 996
Score = 43.9 bits (102), Expect = 2e-04
Identities = 44/180 (24%), Positives = 63/180 (35%), Gaps = 24/180 (13%)
Query: 26 KREKMRAKQNPPGP-------APPGG----GSSDAAGKP-------PAGALGTPAAAAAN 67
++E ++ +Q PGP PPG G G P G +G P
Sbjct: 651 QQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLL 710
Query: 68 ELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDE 127
L P G P P PGPGG G PGP P + P P +
Sbjct: 711 GLQG--PPGPPGVPGPPGPGGSPGLPGEIGFP-GKPGPPGPTGPPGKDGPNGPPGPPGTK 767
Query: 128 EEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKER 187
EP E+G+ P +G+I ++ L + G +P A ++ Q E+
Sbjct: 768 GEPG---ERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEK 824
Score = 39.3 bits (90), Expect = 0.005
Identities = 48/171 (28%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 9 SSGLGGSTTDFLEEWKAKREKMRAKQNPPG-PAPPGG-GSSDAAGKPPAGALGTPAAAAA 66
S G+ G + E MR Q PPG P PPG G+ G+ G GT
Sbjct: 546 SKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGE--RGEKGTRGEKGE 603
Query: 67 NELNNNLPG--------GAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASAS 118
L + PG G P V GP G VG A PG S +
Sbjct: 604 RGL-DGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPA----GPPGVPGSVVQQEGLKGE 658
Query: 119 AAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIP 169
P R + G P GP R G ++ LR K+ G IP
Sbjct: 659 QGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQ--GLRGKKGDMGPPGIP 707
Score = 36.2 bits (82), Expect = 0.043
Identities = 36/133 (27%), Positives = 42/133 (31%), Gaps = 34/133 (25%)
Query: 33 KQNPPGPAPPGG--------GSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP 84
K+ PPGP P G G GKP G G P G P +P
Sbjct: 1223 KEGPPGPQGPSGLPGIPGEEGKEGRDGKP--GPPGEP--------------GKAGEPGLP 1266
Query: 85 GPGGVNCAVGSAMLT--RAAPGPR--------RSEDEPPAASASAAPPPQRDEEEPDGVP 134
GP G G T APGPR ++ P P + + P G P
Sbjct: 1267 GPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPP 1326
Query: 135 EKGKSSGPSARKG 147
K S G G
Sbjct: 1327 GKNGSPGSPGEPG 1339
Score = 35.4 bits (80), Expect = 0.074
Identities = 36/129 (27%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 31 RAKQNPPG-PAPPGGGSSDAAGKPPA----GALGTPAAAAANELNNNLPGGAPA------ 79
R PG P PPG G G + G LGT AA + N G
Sbjct: 969 RGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRG 1028
Query: 80 APAVPGPGGVNCAVGSAMLTRAAP-GPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGK 138
AP +PG G G + P GP + P + P PQ DG P
Sbjct: 1029 APGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGR-DGAPGNPG 1087
Query: 139 SSGPSARKG 147
GP + G
Sbjct: 1088 ERGPPGKPG 1096
Score = 35.0 bits (79), Expect = 0.096
Identities = 38/137 (27%), Positives = 48/137 (35%), Gaps = 36/137 (26%)
Query: 33 KQNPPGPAPPGG--GSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGP---- 86
++ PGP P G G+ G P G G P G +P +PGP
Sbjct: 959 EEGSPGPVGPRGDPGAPGLPGPPGKGKDGEP--------------GLRGSPGLPGPLGTK 1004
Query: 87 -------GGVNCAVGSAML--TRAAPG-PRRSEDEPPAASASAAPP----PQRDEEEPD- 131
G NCA+G + R APG P A PP P D+ P
Sbjct: 1005 AACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGS 1064
Query: 132 -GVPEKGKSSGPSARKG 147
G+P GP+ R G
Sbjct: 1065 RGLPGFPGPQGPAGRDG 1081
Score = 35.0 bits (79), Expect = 0.096
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 16/120 (13%)
Query: 37 PGPAPPGG--------GSSDAAGKPPAGALGTPAAA--AANELNNNLPGGAPAAPAVPGP 86
PGP P G G GKP +L +P A ++ N+ P G P P +PG
Sbjct: 1071 PGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGF 1130
Query: 87 GGVNCAVGSAMLTRAAPGPRRSEDEPPAASAS---AAPPPQRDEEEPDG-VPEKGKSSGP 142
G G R ++ E PP A P + E DG V +KG P
Sbjct: 1131 KGDKGVPGKP--GREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHP 1188
Score = 34.7 bits (78), Expect = 0.13
Identities = 31/114 (27%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
PPG P G A P G G+P P G P +PG G G
Sbjct: 1196 PPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPG-----PQGPSGLPGIPGEEGKEGRDGK 1250
Query: 96 AMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKG 149
PGP EP A P P+ P G S P R G
Sbjct: 1251 -------PGP---PGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESG 1294
Score = 32.3 bits (72), Expect = 0.62
Identities = 30/115 (26%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 33 KQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCA 92
+Q PGP+ G + PAG G P + E G PGP G A
Sbjct: 618 QQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQE-------GLKGEQGAPGPRGHQGA 670
Query: 93 VGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
G R GP D PP ++ + P G+P GP G
Sbjct: 671 PGPPG-ARGPIGP-EGRDGPPGLQGLRG---KKGDMGPPGIPGLLGLQGPPGPPG 720
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/119 (26%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 30 MRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGV 89
M++ Q PGP P G P G G P GG GP G
Sbjct: 1492 MKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPG-----------QGGLEGPSGPIGPKGE 1540
Query: 90 NCAVGSAMLTRAAPG-PRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
A G APG R E PP P + P G+P +GP+ G
Sbjct: 1541 RGAKGDP----GAPGVGLRGEMGPPGIPGQPGEPGYAKDGLP-GIPGPQGETGPAGHPG 1594
Score = 28.9 bits (63), Expect = 6.9
Identities = 31/127 (24%), Positives = 39/127 (30%), Gaps = 35/127 (27%)
Query: 27 REKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGP 86
+E + K GP P G P G G P G+P +P PGP
Sbjct: 1301 QEGLPGKDGDTGPTGPQG---------PQGPRGPPGK-----------NGSPGSPGEPGP 1340
Query: 87 GGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEK----GKSSGP 142
G GS + E+ P P E GVP K GK P
Sbjct: 1341 SGTPGQKGS-----------KGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEP 1389
Query: 143 SARKGKG 149
+ +G
Sbjct: 1390 GFKGERG 1396
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 48.1 bits (113), Expect = 1e-05
Identities = 61/200 (30%), Positives = 80/200 (40%), Gaps = 24/200 (12%)
Query: 36 PPGPAPPGGGSS-DAAGKPPAGAL-GTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
P PA P G++ DA P AGA PAA AA E A APA P G
Sbjct: 447 PDAPADPDSGAAPDAPADPDAGAAPEAPAAPAAAETR-----AAHVAPAAPDAGAPTAPA 501
Query: 94 GSAMLTRAAPGPRRSEDEPPAASASA---APPPQRDEEEPDGVPEKGKSSGPSARKGKGQ 150
SA TRAA RR+ PA+ A PP + + D P + + SA +GK
Sbjct: 502 ASA--TRAAQ-VRRAASAAPASGARRKIHLRPPSPEIQAAD--PPTPRPTRASAWRGKS- 555
Query: 151 IEKRKLREKRRSTGVVNIPAAECLDEYEDDEAG-----QKERKREDAITQQNTIQNEAVN 205
E + R GV + DE +D +G Q R R Q+N ++N V
Sbjct: 556 -ESSRGRRVYYDEGVASSDDDSSGDESDDGTSGCLRWFQHRRNRRRRKPQRNLLRNFLVQ 614
Query: 206 LLDPGSSYLLQEPPRTVSGR 225
G + E P+ + R
Sbjct: 615 AF--GGCFGRSESPQPKASR 632
Score = 40.8 bits (94), Expect = 0.002
Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 28 EKMRAKQNPP--GPAPPGGGSSDAA--GKPPAGALGTPAAAAANELNNNLPGGAPAAPAV 83
+K + PP A G++DAA GK P+ G+PAA AA+ + APAAPA
Sbjct: 344 DKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASA--DTAARAAPAAPAD 401
Query: 84 PGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPS 143
P G S A P +P + +A AAP PD + + P
Sbjct: 402 PDSGATPEDPDSG-TAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDSGAAPD 460
Query: 144 A 144
A
Sbjct: 461 A 461
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 48.1 bits (113), Expect = 1e-05
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 32/141 (22%)
Query: 38 GPAPPGG-------GSSDAAGKPPAGALG---TPAAAAANELNNNLPGGAPAAPAVPGPG 87
GP PPGG G AGKPP+ G PAA AA + A P VPGPG
Sbjct: 14 GPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAAR---------STAVPPVPGPG 64
Query: 88 -GVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDG--VPEKGKSSGPSA 144
G G +R R EP +A+P P++ G P + ++ GP+
Sbjct: 65 PGPGPGPGPGSTSR-----RLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAG 119
Query: 145 RKGKG-----QIEKRKLREKR 160
++ G Q++ R R R
Sbjct: 120 QEADGPRRTLQVDSRTQRSGR 140
Score = 33.1 bits (74), Expect = 0.37
Identities = 37/140 (26%), Positives = 50/140 (35%), Gaps = 26/140 (18%)
Query: 25 AKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVP 84
A E R PP P P S A +PPAG +A A +P G A
Sbjct: 295 APPEVGRVSPQPPQPTKP----STAEPRPPAGEAPAKSATA-------VPAGLGATEQTQ 343
Query: 85 -GPGGVNCAVGSAMLTRAA--------------PGPRRSEDEPPAASASAAPPPQRDEEE 129
G G +G+++LT+A+ P P + + AS P+
Sbjct: 344 EGLTGKLFGLGASLLTQASTLMSVQPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSG 403
Query: 130 PDGVPEKGKSSGPSARKGKG 149
P P G + P AR G G
Sbjct: 404 PGPGPAPGAKTEPGARMGPG 423
Score = 33.1 bits (74), Expect = 0.37
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 10/135 (7%)
Query: 76 GAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEP-DGVP 134
G PAA PG GG + R P P + A+ + AP P ++ P D P
Sbjct: 2283 GKPAAAKAPGAGGPSRPEMPVGAAREEPLPTTTPAAIKEAAGAPAPAPLAGQKPPADAAP 2342
Query: 135 EKGKS--SGPSARKGKGQIEKRK-------LREKRRSTGVVNIPAAECLDEYEDDEAGQK 185
G S P K + E+R+ L+ +R + + +E E + +
Sbjct: 2343 GGGSGALSRPGFEKEEASQEERQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQ 2402
Query: 186 ERKREDAITQQNTIQ 200
+ E+ + Q +Q
Sbjct: 2403 RHREEEQLLVQRELQ 2417
Score = 32.7 bits (73), Expect = 0.48
Identities = 24/84 (28%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 72 NLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPD 131
+L GGA P PG G PGP +PP+A A P
Sbjct: 6 SLEGGAGDGPLPPGGAGPG----------PGPGPGPGAGKPPSAPAGGGQLPAAGAARST 55
Query: 132 GVPE-KGKSSGPSARKGKGQIEKR 154
VP G GP G G +R
Sbjct: 56 AVPPVPGPGPGPGPGPGPGSTSRR 79
Score = 32.0 bits (71), Expect = 0.82
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGA 77
Q PGP P G + G P G P A + + LPGGA
Sbjct: 3861 QPAPGPGPAGVKAGARPGGTPGAPAGQPGADGESVFSKILPGGA 3904
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 14/136 (10%)
Query: 50 AGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSA---------MLTR 100
A KP A LG A ++ P APA P PG + A S +
Sbjct: 3666 AAKPHARDLGRHEARPHSQ-----PSSAPAMPKKGQPGYPSSAEYSQPSRASSAYHHASD 3720
Query: 101 AAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKR 160
+ G R++ P A + A P Q + P +S PS+R+ R+ + ++
Sbjct: 3721 SKKGSRQAHSGPAALQSKAEPQAQPQLQGRQAAPGPQQSQSPSSRQIPSGAASRQPQTQQ 3780
Query: 161 RSTGVVNIPAAECLDE 176
+ G+ P + L +
Sbjct: 3781 QQQGLGLQPPQQALTQ 3796
Score = 30.4 bits (67), Expect = 2.4
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 58 LGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRA--APGPRRSEDEPPAA 115
L +PA + A+ P G P GPGG A RA PGP ++ P
Sbjct: 242 LHSPALSPAHSPAKQ-PLGKPDQERSRGPGGPQPGSRQAETARATSVPGPAQAAAPPEVG 300
Query: 116 SASAAPPPQRDEEEPDGVPEKGKSSGPSA 144
S PP + P G++ SA
Sbjct: 301 RVSPQPPQPTKPSTAEPRPPAGEAPAKSA 329
Score = 28.5 bits (62), Expect = 9.0
Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 32 AKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLP----GGAPAAPAVPGPG 87
A P G PG S A G PAG P A N G AP A PGPG
Sbjct: 3813 AASQPAGKPQPG--PSTATGPQPAGP---PRAEQTNGSKGTAKAPQQGRAPQAQPAPGPG 3867
Query: 88 GVNCAVGS 95
G+
Sbjct: 3868 PAGVKAGA 3875
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 48.1 bits (113), Expect = 1e-05
Identities = 43/131 (32%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 33 KQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPA-VPGP----- 86
K PP PA P + A+ +G G P +A A + + +P APA P P
Sbjct: 407 KDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAV--ASPGAPAPAPAPFRDLA 464
Query: 87 -------GGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPD--GVPEKG 137
GG +CA A P P PPA S P P EEP GVPE G
Sbjct: 465 SAAATEGGGGDCADAGT----AGPAP-----PPPAPSPRPGPRPPSPAEEPATCGVPEPG 515
Query: 138 KSSGPSARKGK 148
++GPS +G+
Sbjct: 516 AAAGPSPPEGE 526
Score = 32.0 bits (71), Expect = 0.82
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 18/103 (17%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPA------AAAANELNNNLPGGAPAAPAVP----- 84
PP PG +S AAG PA PA A ++ + P P PA
Sbjct: 251 PPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKDAASC 310
Query: 85 GPGGVNCAV--GSAMLTRAAPGPRRS--EDEPP---AASASAA 120
GPG AV G+A L +A+P S D PP AAS +AA
Sbjct: 311 GPGAAVAAVERGAAGLPKASPFSVESLLSDSPPRRKAASNAAA 353
Score = 30.4 bits (67), Expect = 2.4
Identities = 35/129 (27%), Positives = 46/129 (35%), Gaps = 27/129 (20%)
Query: 20 LEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPA 79
+E+ K K EK K PGG S +A + + G + E P
Sbjct: 200 MEKKKRKHEKKLLKSQGRHLHSPGGLSLHSAPSSDSDSGGGGLSPEPPE---------PP 250
Query: 80 APAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKS 139
PA GPG A G+A A PG EPPA +P P +
Sbjct: 251 PPAAKGPGAH--ASGAAGTAPAPPG------EPPAPGTC----------DPAFYPSQRSG 292
Query: 140 SGPSARKGK 148
+GP R G+
Sbjct: 293 AGPQPRPGR 301
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 47.8 bits (112), Expect = 1e-05
Identities = 71/318 (22%), Positives = 126/318 (39%), Gaps = 28/318 (8%)
Query: 7 RTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAA 66
++ S + + + L+ + +E + PA S K PA TP A +
Sbjct: 1298 KSDSDMWINQSSSLDSSTSSQEHLNHSSKSVTPASTLTKSGPGRWKTPAAIPATPVAVS- 1356
Query: 67 NELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRD 126
+ +LP P P V G + G +M P P ++ P+A +AA +R+
Sbjct: 1357 QPIRTDLPP-PPPPPPVHYAGDFD---GMSMDLPLPPPPSANQIGLPSAQVAAAERRKRE 1412
Query: 127 EEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKE 186
E + EK + + +RK RE+ R G + + L+ ++
Sbjct: 1413 EHQRWYEKEKARLE---------EERERKRREQERKLGQMR---TQSLNPAPFSPLTAQQ 1460
Query: 187 RKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDR 246
K E T Q Q + L P Q+ PRT+ R +VS+E++SS S +
Sbjct: 1461 MKPEKPSTLQRP-QETVIRELQP------QQQPRTIERRDLQYITVSKEELSSGDSLSPD 1513
Query: 247 SGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMIGKLKEE 306
+ L K+I++L+ + R +E+ RL +LM + + K
Sbjct: 1514 PWKRDAKEKLEKQQQMHIVDMLSKEIQELQSKPDRSAEESDRLRKLMLEWQFQ----KRL 1569
Query: 307 IDLLNRDLDDIEDENEQL 324
+ +D DD E+E++ +
Sbjct: 1570 QESKQKDEDDEEEEDDDV 1587
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 47.8 bits (112), Expect = 1e-05
Identities = 71/318 (22%), Positives = 126/318 (39%), Gaps = 28/318 (8%)
Query: 7 RTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAA 66
++ S + + + L+ + +E + PA S K PA TP A +
Sbjct: 1299 KSDSDMWINQSSSLDSSTSSQEHLNHSSKSVTPASTLTKSGPGRWKTPAAIPATPVAVS- 1357
Query: 67 NELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRD 126
+ +LP P P V G + G +M P P ++ P+A +AA +R+
Sbjct: 1358 QPIRTDLPP-PPPPPPVHYAGDFD---GMSMDLPLPPPPSANQIGLPSAQVAAAERRKRE 1413
Query: 127 EEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKE 186
E + EK + + +RK RE+ R G + + L+ ++
Sbjct: 1414 EHQRWYEKEKARLE---------EERERKRREQERKLGQMR---TQSLNPAPFSPLTAQQ 1461
Query: 187 RKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDR 246
K E T Q Q + L P Q+ PRT+ R +VS+E++SS S +
Sbjct: 1462 MKPEKPSTLQRP-QETVIRELQP------QQQPRTIERRDLQYITVSKEELSSGDSLSPD 1514
Query: 247 SGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMIGKLKEE 306
+ L K+I++L+ + R +E+ RL +LM + + K
Sbjct: 1515 PWKRDAKEKLEKQQQMHIVDMLSKEIQELQSKPDRSAEESDRLRKLMLEWQFQ----KRL 1570
Query: 307 IDLLNRDLDDIEDENEQL 324
+ +D DD E+E++ +
Sbjct: 1571 QESKQKDEDDEEEEDDDV 1588
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 47.8 bits (112), Expect = 1e-05
Identities = 71/318 (22%), Positives = 126/318 (39%), Gaps = 28/318 (8%)
Query: 7 RTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAA 66
++ S + + + L+ + +E + PA S K PA TP A +
Sbjct: 1283 KSDSDMWINQSSSLDSSTSSQEHLNHSSKSVTPASTLTKSGPGRWKTPAAIPATPVAVS- 1341
Query: 67 NELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRD 126
+ +LP P P V G + G +M P P ++ P+A +AA +R+
Sbjct: 1342 QPIRTDLPP-PPPPPPVHYAGDFD---GMSMDLPLPPPPSANQIGLPSAQVAAAERRKRE 1397
Query: 127 EEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKE 186
E + EK + + +RK RE+ R G + + L+ ++
Sbjct: 1398 EHQRWYEKEKARLE---------EERERKRREQERKLGQMR---TQSLNPAPFSPLTAQQ 1445
Query: 187 RKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDR 246
K E T Q Q + L P Q+ PRT+ R +VS+E++SS S +
Sbjct: 1446 MKPEKPSTLQRP-QETVIRELQP------QQQPRTIERRDLQYITVSKEELSSGDSLSPD 1498
Query: 247 SGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMIGKLKEE 306
+ L K+I++L+ + R +E+ RL +LM + + K
Sbjct: 1499 PWKRDAKEKLEKQQQMHIVDMLSKEIQELQSKPDRSAEESDRLRKLMLEWQFQ----KRL 1554
Query: 307 IDLLNRDLDDIEDENEQL 324
+ +D DD E+E++ +
Sbjct: 1555 QESKQKDEDDEEEEDDDV 1572
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 47.8 bits (112), Expect = 1e-05
Identities = 39/116 (33%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 36 PPGPAPPGGGSSDAAGKPPA-GALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVG 94
P GP P GG S G PP G P N+ P P P P P G N + G
Sbjct: 120 PEGPPPQGGNQSQ--GPPPRPGKPEGPPPQGGNQSQG--PPPRPGKPEGPPPQGGNQSQG 175
Query: 95 SAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKG--KSSGPSARKGK 148
P P + E PP + PP R + P+G P +G +S GP R GK
Sbjct: 176 PP------PHPGKPEGPPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQGPPPRPGK 224
Score = 46.6 bits (109), Expect = 3e-05
Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
P G P GG PP G P P P P P P G N + G
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQG---PPPRPGKPEGPPPQGGNQSQGP 92
Query: 96 AMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKG--KSSGPSARKGK 148
P P + E +PP + PP R + P+G P +G +S GP R GK
Sbjct: 93 P------PRPGKPEGQPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQGPPPRPGK 140
Score = 43.9 bits (102), Expect = 2e-04
Identities = 35/118 (29%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 36 PPGPAPPGGGSSDAAGKPPA-GALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVG 94
P GP P GG S G PP G P N+ P P P P P G N + G
Sbjct: 141 PEGPPPQGGNQSQ--GPPPRPGKPEGPPPQGGNQSQG--PPPHPGKPEGPPPQGGNQSQG 196
Query: 95 SAMLTRAAPGP-----RRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
GP +S+ PP PP Q + P GK GP ++G
Sbjct: 197 PPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEG 254
Score = 43.5 bits (101), Expect = 3e-04
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 33 KQNPPGPA-----PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPG 87
++ PP P PP GG+ P G P N+ P P P P
Sbjct: 48 QRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQG--PPPRPGKPEGQPPQ 105
Query: 88 GVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKG--KSSGPSAR 145
G N + G P P + E PP + PP R + P+G P +G +S GP R
Sbjct: 106 GGNQSQGPP------PRPGKPEGPPPQGGNQSQGPPPRPGK-PEGPPPQGGNQSQGPPPR 158
Query: 146 KGK 148
GK
Sbjct: 159 PGK 161
Score = 43.1 bits (100), Expect = 4e-04
Identities = 36/121 (29%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 36 PPGPAPPGGGSSDAAGKPP-AGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVG 94
P GP P GG S G PP G P N+ P P P P P G N + G
Sbjct: 162 PEGPPPQGGNQSQ--GPPPHPGKPEGPPPQGGNQSQG--PPPRPGKPEGPPPQGGNQSQG 217
Query: 95 SAMLTRAAPGP-----RRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKG 149
GP + + PP PPPQ + +P P G+ GP G
Sbjct: 218 PPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQ-EGNKPQRPPPPGRPQGPPPPGGNP 276
Query: 150 Q 150
Q
Sbjct: 277 Q 277
Score = 36.6 bits (83), Expect = 0.033
Identities = 33/112 (29%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 36 PPGPAPPGGGSSDAAGKPPA-GALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVG 94
P GP P GG S G PP G P N+ P P P P G N G
Sbjct: 183 PEGPPPQGGNQSQ--GPPPRPGKPEGPPPQGGNQSQG--PPPRPGKPEGPPSQGGNKPQG 238
Query: 95 SAMLTRAAPGPRRSE----DEPPAASASAAPPPQRDEEEPDGVPEKGKSSGP 142
GP E PP PPP + P GK GP
Sbjct: 239 PPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGP 290
Score = 32.7 bits (73), Expect = 0.48
Identities = 29/105 (27%), Positives = 30/105 (28%), Gaps = 22/105 (20%)
Query: 36 PPGPAPPGGGSSDAAGKP--PAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
PP P P G S KP P G P E N P P P P
Sbjct: 219 PPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPP------- 271
Query: 94 GSAMLTRAAPGPRRSEDEPPAASASAAPPPQ----RDEEEPDGVP 134
PG + PP A PPP R P G P
Sbjct: 272 ---------PGGNPQQPLPPPAGKPQGPPPPPQGGRPHRPPQGQP 307
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 47.4 bits (111), Expect = 2e-05
Identities = 46/153 (30%), Positives = 54/153 (35%), Gaps = 40/153 (26%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPG--------GAPAAP---- 81
Q PPGP PGG D P G G P N PG GAP AP
Sbjct: 617 QGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPG-ENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 82 --AVPGPGGVNCAVGSAMLTRAA--PGPRRSEDE-----PPAASAS-------------A 119
PG G G+ L A PGP + PP A+ +
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLG 735
Query: 120 APPPQRDEEEP-----DGVPEKGKSSGPSARKG 147
+P P+ D+ EP DGVP K GP+ G
Sbjct: 736 SPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG 768
Score = 44.3 bits (103), Expect = 2e-04
Identities = 39/136 (28%), Positives = 46/136 (33%), Gaps = 38/136 (27%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPA-----------------------AAAANELNNN 72
PPGP P G S D PAG G P AA + +
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRG 1110
Query: 73 LPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDG 132
PG P AP PGP G A+GS PGP P + PP +D G
Sbjct: 1111 FPGN-PGAPGSPGPAGQQGAIGS-------PGP-----AGPRGPVGPSGPPGKD--GTSG 1155
Query: 133 VPEKGKSSGPSARKGK 148
P GP +G+
Sbjct: 1156 HPGPIGPPGPRGNRGE 1171
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/130 (25%), Positives = 45/130 (34%), Gaps = 15/130 (11%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAA-AAANELNNNLPGGAPAAPAVPGPGGVNCAVG 94
PPGP G K G G+P + A + P G A PGP G+N + G
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPG 393
Query: 95 SA--------------MLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSS 140
M R PGP + P + P + EP E+G++
Sbjct: 394 GKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAG 453
Query: 141 GPSARKGKGQ 150
P KG+
Sbjct: 454 IPGVPGAKGE 463
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 26/140 (18%)
Query: 31 RAKQNPPG----PAPPGGGSSDAAGKPP-----AGALGTPAAAA----ANELNNNLPGGA 77
R PPG P PPG S PP GA G+P + A + GA
Sbjct: 878 RGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGA 937
Query: 78 PAAPAVPGPGGVNCAVGSAMLT--------RAAPGPR--RSEDEPPAASASAAPPPQRDE 127
P PGP G+ G+ L R +PGP+ + E P A+ + +R
Sbjct: 938 QGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSG---ERGP 994
Query: 128 EEPDGVPEKGKSSGPSARKG 147
P G+P ++G R G
Sbjct: 995 PGPQGLPGLAGTAGEPGRDG 1014
Score = 43.5 bits (101), Expect = 3e-04
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 31 RAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPG--GAPAAPAVPGPGG 88
+ + PPG A P GGS A P G G + PG G P A +PGP G
Sbjct: 833 KGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG-------PGAAGFPGARGLPGPPG 885
Query: 89 VNCAVGSAMLTRAAPGPRRS--EDEPPAASASAAPPPQRDEEEPDG-VPEKGKSSGPSAR 145
N G PGP S +D PP + + P P G + G+ P A+
Sbjct: 886 SNGNPG-------PPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQ 938
Query: 146 KGKG 149
G
Sbjct: 939 GPPG 942
Score = 42.0 bits (97), Expect = 8e-04
Identities = 34/120 (28%), Positives = 42/120 (35%), Gaps = 12/120 (10%)
Query: 33 KQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCA 92
K P GP G D + P G +G P A + + GGAP P + GP G
Sbjct: 743 KGEPGGPGADGVPGKDGP-RGPTGPIGPPGPAG--QPGDKGEGGAPGLPGIAGPRGSPGE 799
Query: 93 VGSAMLTRAAPGPRRSEDEP-----PAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
G PGP P P P ++ E P GV SGP+ G
Sbjct: 800 RGET----GPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPG 855
Score = 42.0 bits (97), Expect = 8e-04
Identities = 37/121 (30%), Positives = 42/121 (34%), Gaps = 20/121 (16%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAA----AANELNNNLPGGAPAAPAVPGPGGV 89
+ P GP P G + K GA G P A + E P G P PG G
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGE 820
Query: 90 NCAVGSAMLTRAAPGPRRSEDE-----PPAASASAAPPPQRDEEEPDGVP-EKGKSSGPS 143
G R APG + PP S A PP P GV E+G GP
Sbjct: 821 PGGKGE----RGAPGEKGEGGPPGVAGPPGGSGPAGPP------GPQGVKGERGSPGGPG 870
Query: 144 A 144
A
Sbjct: 871 A 871
Score = 38.9 bits (89), Expect = 0.007
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 13/136 (9%)
Query: 21 EEWKAKREKMRAKQNPPGPAP-PG----GGSSDAAGKPPAGAL----GTPAAAAANELNN 71
E K + ++ PPGP PG G G P + L G+P +
Sbjct: 979 ESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKG--DRGE 1036
Query: 72 NLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPD 131
N GAP AP PGP G G + R GP P A + AP PQ +
Sbjct: 1037 NGSPGAPGAPGHPGPPGPVGPAGKSG-DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKG 1095
Query: 132 GVPEKGKSSGPSARKG 147
E+G ++G +G
Sbjct: 1096 ETGERG-AAGIKGHRG 1110
Score = 37.7 bits (86), Expect = 0.015
Identities = 35/142 (24%), Positives = 47/142 (33%), Gaps = 33/142 (23%)
Query: 39 PAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPG--GAPAAPAVPGPGGV--NCAVG 94
P PP + G+ P G G P N + PG G P +P PGP G+ +C G
Sbjct: 89 PQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGD-PGIPGQPGSPGSPGPPGICESCPTG 147
Query: 95 SAMLTR--------------------------AAPGPRRSEDEP--PAASASAAPPPQRD 126
+ PGP + P P + PP +
Sbjct: 148 PQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPG 207
Query: 127 EEEPDGVPEKGKSSGPSARKGK 148
+ P G P + GPS GK
Sbjct: 208 QAGPSGPPGPPGAIGPSGPAGK 229
Score = 37.4 bits (85), Expect = 0.019
Identities = 46/201 (22%), Positives = 65/201 (32%), Gaps = 36/201 (17%)
Query: 5 GYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKP----PAGALGT 60
G+R G G + + + PGP P G + G+P AGA G
Sbjct: 264 GHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGER-GRPGLPGAAGARGN 322
Query: 61 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA 120
A ++ P G P PG G VG A + P + + P A A
Sbjct: 323 DGARGSDGQPG--PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQ 380
Query: 121 PPP----------QRDEEEPDGVP-------------EKGKSSGPSARKGKGQIEKRKL- 156
PP + E P G+P G + P R G G+ K
Sbjct: 381 GPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAK 440
Query: 157 -----REKRRSTGVVNIPAAE 172
R +R G+ +P A+
Sbjct: 441 GEPGPRGERGEAGIPGVPGAK 461
Score = 37.4 bits (85), Expect = 0.019
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 33 KQNPPGPAPPGGGSSDAAGKPPAGALGTPAAA----AANELNNNLPGGAPAAPAVPG-PG 87
++ PG P G + K PAG G P A AA E + G P +PG PG
Sbjct: 484 ERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPG 543
Query: 88 GVNCAVGSAMLTRAAPGPRRSEDE-----PPAASASAAPP-------PQRDEEEPDGVPE 135
G + PGP S+ E PP S P P+ ++ P E
Sbjct: 544 GPG--------SDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGE 595
Query: 136 KGKSSGPSARKGKGQ 150
+G GP + G+
Sbjct: 596 RGGPGGPGPQGPPGK 610
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 47.4 bits (111), Expect = 2e-05
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 24/251 (9%)
Query: 28 EKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPG 87
E +A P P + PPA L + EL + G P+ P
Sbjct: 947 EHDKAANKMPLAQKPALAPKPTSQTPPASPLSKLSRPYLVELLSRRAGRPDPEPSEPSKE 1006
Query: 88 GVNCAVGSAMLTRAAPGP------RRSEDEPPAASASAAPP-PQRDEEEPDGVPEKGKSS 140
S + PGP +R E+E A+PP P +E+P PE G+
Sbjct: 1007 DQE---SSDRRPPSPPGPEERKGQKRDEEEEATERKPASPPLPATQQEKPSQTPEAGRKE 1063
Query: 141 GPSARKGKGQIEKRKLREKRRSTGVVNIP-AAECLDEYEDDEAGQKERKREDAITQQNTI 199
P + + ++ KL EK + + I A + + + +A ++ERK+ Q +
Sbjct: 1064 KPML-QSRHSLDGSKLTEKVETAQPLWITLALQKQKGFREQQATREERKQAREAKQAEKL 1122
Query: 200 QNEAVNL-LDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDANV 258
E V++ + PGSS + + +KST E+ + SR +R
Sbjct: 1123 SKENVSVSVQPGSSSVSR-----AGSLHKSTALPEEKRPETAVSRLER------REQLKK 1171
Query: 259 SGTLVSSSTLE 269
+ TL +S T+E
Sbjct: 1172 ANTLPTSVTVE 1182
Score = 38.1 bits (87), Expect = 0.011
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 74 PGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQ--------- 124
PG PA+ P P A + + A P+ + PPA+ S P
Sbjct: 934 PGPPPASSQTPAPEHDKAANKMPLAQKPALAPKPTSQTPPASPLSKLSRPYLVELLSRRA 993
Query: 125 -RDEEEPDGVPEKGKSS---------GPSARKGKGQIEKRKLREKRRSTGVVNIPAAECL 174
R + EP ++ + S GP RKG+ + E+ + E++ ++ +PA +
Sbjct: 994 GRPDPEPSEPSKEDQESSDRRPPSPPGPEERKGQKRDEEEEATERKPASPP--LPATQQE 1051
Query: 175 DEYEDDEAGQKER 187
+ EAG+KE+
Sbjct: 1052 KPSQTPEAGRKEK 1064
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 47.0 bits (110), Expect = 2e-05
Identities = 58/235 (24%), Positives = 83/235 (35%), Gaps = 30/235 (12%)
Query: 37 PGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGA--PAAPAVPGPGGVNCAVG 94
PGP P G PP+ P+A+ N N GGA P + + G GG
Sbjct: 47 PGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGN-GGGAFRPGSRRLLGLGGPPRPFV 105
Query: 95 SAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSG---PSARKGKGQI 151
+L A+PG PPAA A+P R GV + G P+ G +
Sbjct: 106 VLLLPLASPG------APPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPL 159
Query: 152 EKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKERKREDAITQQNTIQNEAVNLLDPGS 211
+ + + Q++++++ QQ A N+ PG
Sbjct: 160 ------------------TMSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGG 201
Query: 212 SYLLQEPPRTVSGRYKSTTSVSEEDVSSRYSRTDRSGFPRYNRDANVSGTLVSSS 266
S LL P S S +S S SS + T G P R N + L S+
Sbjct: 202 SGLLASPAAAPSPSSSSVSSSSATAPSSVVAATSGGGRPGLGRGRNSNKGLPQST 256
Score = 30.4 bits (67), Expect = 2.4
Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 1/126 (0%)
Query: 33 KQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCA 92
+QN P PG GS + + + +N +P +P P +
Sbjct: 510 RQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSSRPPSRYQS 569
Query: 93 VGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEP-DGVPEKGKSSGPSARKGKGQI 151
+++ RAA R P S + P P +P++ S GP K Q
Sbjct: 570 GPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRMSSEGPPRMSPKAQR 629
Query: 152 EKRKLR 157
R R
Sbjct: 630 HPRNHR 635
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 46.6 bits (109), Expect = 3e-05
Identities = 40/120 (33%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 30 MRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPG--GAPAAPAVPGPG 87
+R + PPGPA G++ AG P GA G P A A N PG GAP P GP
Sbjct: 369 VRGEPGPPGPA----GAAGPAGNP--GADGQPGAKGA----NGAPGIAGAPGFPGARGPS 418
Query: 88 GVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
G G PGP+ + E P A S + E P GV +G ++G
Sbjct: 419 GPQGPGG-------PPGPKGNSGE-PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Score = 46.6 bits (109), Expect = 3e-05
Identities = 40/122 (32%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPA--AAAANELNNNLPG--GAPAAPAVPGPGGVNC 91
PPGP P G PAGA GTP A LPG G P +PGP G
Sbjct: 924 PPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPG 983
Query: 92 AVG--SAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEE-EPDGVPEKGKSSGPSARKGK 148
G A R PGP PP A PP + E P G+ P A+ +
Sbjct: 984 KQGPSGASGERGPPGPM----GPPGL---AGPPGESGREGAPGAEGSPGRDGSPGAKGDR 1036
Query: 149 GQ 150
G+
Sbjct: 1037 GE 1038
Score = 44.7 bits (104), Expect = 1e-04
Identities = 41/139 (29%), Positives = 51/139 (36%), Gaps = 35/139 (25%)
Query: 33 KQNPPGPA----------PPGG-GSSDAAGKP-PAGALGTPAAAAANELNNNLPGGAPAA 80
K PPGPA PPG G + G P P GA G P A G P
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGER--------GVPGP 603
Query: 81 PAVPGPGGVNCAVGSAMLTRAAPGP-----RRSEDEPPAA------SASAAPPPQRDEEE 129
P GP G + G+ + PGP R E P + A PP + +
Sbjct: 604 PGAVGPAGKDGEAGA----QGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPG 659
Query: 130 PDGVPEKGKSSGPSARKGK 148
GVP + GPS +G+
Sbjct: 660 EQGVPGDLGAPGPSGARGE 678
Score = 43.5 bits (101), Expect = 3e-04
Identities = 44/124 (35%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 31 RAKQNPPGPA----PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGA-PAAPAVPG 85
R + PPGPA PPG A G+P GA G P A A + PG A PA P PG
Sbjct: 802 RGEPGPPGPAGFAGPPG-----ADGQP--GAKGEPGDAGAKG-DAGPPGPAGPAGP--PG 851
Query: 86 PGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSAR 145
P G N A R + GP + P AA P P + P GK G R
Sbjct: 852 PIG-NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPR 910
Query: 146 KGKG 149
G
Sbjct: 911 GETG 914
Score = 42.4 bits (98), Expect = 6e-04
Identities = 38/146 (26%), Positives = 50/146 (34%), Gaps = 16/146 (10%)
Query: 31 RAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVN 90
R PPG P G +A + P G G A E P G+P +PGP G
Sbjct: 598 RGVPGPPGAVGPAGKDGEAGAQGPPGPAG-----PAGERGEQGPAGSPGFQGLPGPAGPP 652
Query: 91 CAVG-----SAMLTRAAPGP--RRSEDEPPAASASAAPPPQRDEEEPDGVP----EKGKS 139
G APGP R E P PP +G P KG +
Sbjct: 653 GEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA 712
Query: 140 SGPSARKGKGQIEKRKLREKRRSTGV 165
P A +G + + +R + G+
Sbjct: 713 GAPGAPGSQGAPGLQGMPGERGAAGL 738
Score = 42.0 bits (97), Expect = 8e-04
Identities = 38/120 (31%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 31 RAKQNPPGPAPP---GGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPG 87
R Q PPGPA P G + K AGA G P + A L +PG AA +PGP
Sbjct: 685 RGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGL-QGMPGERGAA-GLPGPK 742
Query: 88 GVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
G R GP+ ++ P P P G P SGPS G
Sbjct: 743 G----------DRGDAGPKGADGSPGKDGVRGLTGP-IGPPGPAGAPGDKGESGPSGPAG 791
Score = 42.0 bits (97), Expect = 8e-04
Identities = 37/124 (29%), Positives = 43/124 (34%), Gaps = 16/124 (12%)
Query: 36 PPGPAPPGG-----------GSSDAAGKP-PAGALGTPAAAAANELNNNLPGGAPAAPAV 83
PPGPA P G G+ A G P GA G P AA + P G P
Sbjct: 840 PPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG--RVGPPGPSGNAGPPGP 897
Query: 84 PGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPS 143
PGP G G T P R E PP A + P G P G +
Sbjct: 898 PGPAGKEGGKGPRGET--GPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIA 955
Query: 144 ARKG 147
++G
Sbjct: 956 GQRG 959
Score = 40.8 bits (94), Expect = 0.002
Identities = 36/124 (29%), Positives = 46/124 (37%), Gaps = 17/124 (13%)
Query: 33 KQNPPGPAPPGGGSSDA-----AGKPPA-GALGTPAAAAAN-ELNNNLPGGAPAAPAVPG 85
++ PGPA P G +A AG P A G G+P + + + P G P PG
Sbjct: 510 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG 569
Query: 86 PGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSAR 145
P G G PGP+ + EP A P P P V GK A+
Sbjct: 570 PPGARGQAG----VMGFPGPKGAAGEPGKAGERGVPGP------PGAVGPAGKDGEAGAQ 619
Query: 146 KGKG 149
G
Sbjct: 620 GPPG 623
Score = 40.4 bits (93), Expect = 0.002
Identities = 45/156 (28%), Positives = 52/156 (33%), Gaps = 22/156 (14%)
Query: 5 GYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGG-----GSSDAAGKPPA---- 55
G R G G E K ++ PPGP P G G S G P A
Sbjct: 965 GQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP 1024
Query: 56 GALGTPAAAA-ANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPA 114
G G+P A E P GAP AP PGP G A R E P
Sbjct: 1025 GRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVG-----------PAGKSGDRGETGPAG 1073
Query: 115 ASASAAPPPQRDEEEPDGV-PEKGKSSGPSARKGKG 149
+ P R P G +KG++ R KG
Sbjct: 1074 PAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG 1109
Score = 38.5 bits (88), Expect = 0.009
Identities = 34/105 (32%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAA--NELNNNLPGGAPAAPAVPGPGGVNC 91
Q PPGP G + PAG G P +A A + N LPG P P PGP G
Sbjct: 1117 QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPG--PIGP--PGPRGRTG 1172
Query: 92 AVGSAMLTRAAPGPRRSEDEPPAASA----SAAPPPQRDEEEPDG 132
G PGP P SA S P P +++ G
Sbjct: 1173 DAGPV----GPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG 1213
Score = 38.1 bits (87), Expect = 0.011
Identities = 43/142 (30%), Positives = 51/142 (35%), Gaps = 30/142 (21%)
Query: 34 QNPPGPAPPGGGSSDAAGKP----------PAGALGTPAAAAA---------NELNNNLP 74
+ PPGP P G AGKP P GA G P A + L+
Sbjct: 220 RGPPGP-PGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKG 278
Query: 75 GGAPAAP-AVPGPGGVNCAVGSAMLTRAAPGPRRSEDEP-PA-------ASASAAPPPQR 125
PA P PG G N A G M R PG R P PA A+ +A PP
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQ-MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPT 337
Query: 126 DEEEPDGVPEKGKSSGPSARKG 147
P G P + G + +G
Sbjct: 338 GPAGPPGFPGAVGAKGEAGPQG 359
Score = 37.0 bits (84), Expect = 0.025
Identities = 34/117 (29%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
P GPA P G K AG G + P G P PGP G G+
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGPQGPRGSEG--------PQGVRGEPGPPGPAGAAGPAGN 387
Query: 96 AMLTRAAPGPRRSEDEPPAASASAAPPPQ--RDEEEPDGVP-EKGKSSGPSARKGKG 149
PG + + P A A P + + P G P KG S P A KG
Sbjct: 388 PG-ADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKG 443
Score = 36.6 bits (83), Expect = 0.033
Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 8/123 (6%)
Query: 27 REKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGP 86
++ +R P GP P G D P+G G A A + G P GP
Sbjct: 759 KDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP--GDRGEPGPPGPAGFAGP 816
Query: 87 GGVNCAVGSAMLTRAAPGPRRSEDE--PPAASASAAPPPQRDEEEPDGVPEKGKSSGPSA 144
G + G+ + PG ++ + PP + A PP G S+GP
Sbjct: 817 PGADGQPGA----KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPG 872
Query: 145 RKG 147
G
Sbjct: 873 ATG 875
Score = 36.2 bits (82), Expect = 0.043
Identities = 42/151 (27%), Positives = 46/151 (30%), Gaps = 41/151 (27%)
Query: 34 QNPPGPA-------------------PPG-----------GGSSDAAGKPPAGALGTPAA 63
Q PPGPA PPG G A K PAG G+P
Sbjct: 457 QGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGP 516
Query: 64 A--------AANELNNNLPG--GAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPP 113
A A LPG G +P PGP G G A PGP
Sbjct: 517 AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG-QDGRPGPPGPPGARG 575
Query: 114 AASASAAPPPQRDEEEPDGVPEKGKSSGPSA 144
A P P+ EP E+G P A
Sbjct: 576 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Score = 33.5 bits (75), Expect = 0.28
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 20/119 (16%)
Query: 36 PPGPAPPGGGSSDAAGKPPAG--ALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
PPGP P G + A + G T + + + P G P P PGP G
Sbjct: 146 PPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQ--- 202
Query: 94 GSAMLTRAAPGPRRSEDEPPAAS-----ASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
GP EP A+ PP + ++ G P + GP +G
Sbjct: 203 ----------GPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG 251
Score = 30.4 bits (67), Expect = 2.4
Identities = 32/120 (26%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
Q G P G + + PAG G L P G P P PG GG
Sbjct: 105 QETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPG--PPGPPGPPGPPGLGGNFAPQ 162
Query: 94 GSAMLTR------AAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
S + PGP AP PQ + P G P + +SGP +G
Sbjct: 163 LSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQ-GFQGPPGEPGEPGASGPMGPRG 221
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 46.2 bits (108), Expect = 4e-05
Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 20 LEEWK-AKREKM--RAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNL--P 74
L+ W+ A+R K+ RA + P GP PP + A + P G A A L P
Sbjct: 219 LQRWEVARRAKLHGRAPRRPSGPGPPS--PTPPAPRLPQDPCGPDCAPPAPGLPRGPCGP 276
Query: 75 GGAPAAPAVP-GPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQ 124
APAAP++P P G +CA + L P P S PP A +AA PPQ
Sbjct: 277 DCAPAAPSLPQDPCGPDCAPPAPGLP---PDPCGSNCAPPDAVRAAALPPQ 324
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 46.2 bits (108), Expect = 4e-05
Identities = 43/188 (22%), Positives = 70/188 (37%), Gaps = 24/188 (12%)
Query: 9 SSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANE 68
+SG+ G+ + +EE +A ++ P P + G P LG
Sbjct: 707 ASGVSGNEEEMVEEAEATVNNSSDTESIPSPHTEAAKDTGQNGPKPPATLGAD------- 759
Query: 69 LNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEE 128
G P P P P + + A P PPA + +APPP +E
Sbjct: 760 -------GPPPGPPTPPPEDIPAPTEPTPASEATGAP----TPPPAPPSPSAPPPVVPKE 808
Query: 129 EPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPA-AECLDEYEDDEAGQKER 187
E E+ ++ P +G+ Q + E TG P +EC +E E+ A K+
Sbjct: 809 E----KEEETAAAPPVEEGEEQ-KPPAAEELAVDTGKAEEPVKSECTEEAEEGPAKGKDA 863
Query: 188 KREDAITQ 195
+ +A +
Sbjct: 864 EAAEATAE 871
Score = 30.0 bits (66), Expect = 3.1
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 77 APAAPAVPGPGGVNCAVGSAM----------LTRAAPGPRRSEDEPPAAS---ASAAPPP 123
+P PA P +C +G + + PR + E P A A A PP
Sbjct: 1896 SPVRPAATFPPATHCPLGGTLDGVYPTLMEPVLLPKEAPRVARPERPRADTGHAFLAKPP 1955
Query: 124 QRDEEEPDGVPEKGKSSGP 142
R EP P KG P
Sbjct: 1956 ARSGLEPASSPSKGSEPRP 1974
Score = 28.5 bits (62), Expect = 9.0
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 18/102 (17%)
Query: 33 KQNPPGPAPPGG--GSSDAAGKP---PAGALGTPAAAAANELNNNLPGGAPAAPAVPGPG 87
K PP P PP SDA +P P G +PA A E + A AA A PG
Sbjct: 976 KPAPPAPPPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPG 1035
Query: 88 GVNCAVGSAMLTRAAPGP-------RRSEDEPPAASASAAPP 122
C T P P + S P ++ S APP
Sbjct: 1036 DPPC------WTSGLPFPVPPREVIKASPHAPDPSAFSYAPP 1071
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 45.8 bits (107), Expect = 5e-05
Identities = 56/171 (32%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 4 GGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAA 63
GG GLGG A R+++ A PPGP P GGG A PPA A AA
Sbjct: 19 GGGGGRRGLGG----------APRQRVPALLLPPGP-PVGGGGPGAPPSPPAVAA---AA 64
Query: 64 AAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEP---PAASASAA 120
AAA +PGGA AA A + + S+ + A+ GP P A SAA
Sbjct: 65 AAAGSSGAGVPGGAAAASAA---SSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAA 121
Query: 121 PPPQ-RDEEEPDGVPEKGKSSGPSAR-KGKGQIEKRKLREKRRSTGVVNIP 169
R G G SG + G G E+ ++R RS V P
Sbjct: 122 IGTNLRRFRAVFGESGGGGGSGEDEQFLGFGSDEEVRVRSPTRSPSVKTSP 172
Score = 31.2 bits (69), Expect = 1.4
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 103 PGPRRSEDEPPAASASAAPP--PQRDEEEPDGV----PEKGKSSGPSARKGKGQIEKRKL 156
P P ED P S+S PP P ++ E V PE +++ P++RK Q+ + L
Sbjct: 1244 PTPSAREDPAPKKSSSEPPPRKPVEEKSEEGNVSAPGPESKQATTPASRKSSKQVSQPAL 1303
Score = 29.6 bits (65), Expect = 4.0
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 29/148 (19%)
Query: 105 PRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSA------RKGKGQIEKRKLRE 158
PR+ P +S++P P P E+G++ + R +EK K RE
Sbjct: 816 PRKQTSAPAEPFSSSSPTPLFPWFTPGSQTERGRNKDKAPEELSKDRDADKSVEKDKSRE 875
Query: 159 KRRSTGVVNIPAAECLDEYEDDEAGQKERKREDAITQQNT-------IQNEAVNLLDPGS 211
+ R E E+ +KE++++ + Q ++ + E V G
Sbjct: 876 RDRER------------EKENKRESRKEKRKKGSEIQSSSALYPVGRVSKEKV----VGE 919
Query: 212 SYLLQEPPRTVSGRYKSTTSVSEEDVSS 239
+ +GR KS++ S D++S
Sbjct: 920 DVATSSSAKKATGRKKSSSHDSGTDITS 947
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 45.8 bits (107), Expect = 5e-05
Identities = 50/159 (31%), Positives = 66/159 (41%), Gaps = 34/159 (21%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPG-PGGVNCAVG 94
PP PAPP ++A G P P+ A E P +PA P PG P G+
Sbjct: 41 PPEPAPP----AEATGAP------APSRPCAPE-----PAASPAGPEEPGEPAGL----- 80
Query: 95 SAMLTRAAPGPRRSEDEPPAASASAAPP--PQRDEEEPDGVPEKGKSS-GPSARKGKG-- 149
+ A PG +P AA A A R EEE D EKG SS GP G+G
Sbjct: 81 GELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQEEEQDLDGEKGPSSEGPEEEDGEGFS 140
Query: 150 -QIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQKER 187
+ KLR + + +E E+++ QKE+
Sbjct: 141 FKYSPGKLRGNQYKKMMTK-------EELEEEQRVQKEQ 172
Score = 35.8 bits (81), Expect = 0.056
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 23/100 (23%)
Query: 101 AAPGPRRSEDEP-PAASASAAPPPQR--------------DEEEPDGVPEKGKSSGPSAR 145
A+P P R+ EP P A A+ AP P R + EP G+ E G+ +GP
Sbjct: 33 ASPEPARAPPEPAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEP 92
Query: 146 KGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQK 185
+G G + + A E E E D G+K
Sbjct: 93 EGPG--------DPAAAPAEAEEQAVEARQEEEQDLDGEK 124
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.4 bits (106), Expect = 7e-05
Identities = 45/164 (27%), Positives = 59/164 (35%), Gaps = 11/164 (6%)
Query: 11 GLGGSTTDFLE---EWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAAN 67
GLGG+ + + KA ++ Q P GP P G A P G G P
Sbjct: 174 GLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEP 233
Query: 68 ELNNNL-PGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEP-----PAASASAAP 121
++ + P G P P PG G G A R PGP+ + P P
Sbjct: 234 GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAG-ERGPPGPQGARGFPGTPGLPGVKGHRGY 292
Query: 122 PPQRDEEEPDGVP-EKGKSSGPSARKGKGQIEKRKLREKRRSTG 164
P + G P KG+S P G + R L +R TG
Sbjct: 293 PGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTG 336
Score = 45.4 bits (106), Expect = 7e-05
Identities = 38/122 (31%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 31 RAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAA----AANELNNNLPGGAPAAPAVPGP 86
R PGPA P G A G GA G A A P G P P PGP
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 403
Query: 87 GGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARK 146
G + G T PG + S P A A P P+ G P ++GP K
Sbjct: 404 AGASGNPG----TDGIPGAKGSAGAPGIAGAPGFPGPR-------GPPGPQGATGPLGPK 452
Query: 147 GK 148
G+
Sbjct: 453 GQ 454
Score = 43.1 bits (100), Expect = 4e-04
Identities = 37/129 (28%), Positives = 45/129 (34%), Gaps = 23/129 (17%)
Query: 36 PPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGS 95
PPGPA P G + P+G G P GG P VPG G VG
Sbjct: 643 PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPG-----EGGKPGDQGVPGEAGAPGLVGP 697
Query: 96 AMLTRAAPGPRRS-----------------EDEPPAASASAAPPPQRDEEEPDGVPEKGK 138
R PG R S D P AS A PP + G+P +
Sbjct: 698 RG-ERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERG 756
Query: 139 SSGPSARKG 147
++G + KG
Sbjct: 757 AAGIAGPKG 765
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/142 (28%), Positives = 46/142 (32%), Gaps = 31/142 (21%)
Query: 36 PPGPAPPGG-----------GSSDAAGKP----------PAGALGTPAA----AAANELN 70
PPGPA G GS+ A G P PAG G P A A E
Sbjct: 793 PPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQG 852
Query: 71 NNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEP-----PAASASAAPPPQR 125
G AP GP G G +T G R ++ P P A+ PP
Sbjct: 853 EAGQKGDAGAPGPQGPSGAPGPQGPTGVT-GPKGARGAQGPPGATGFPGAAGRVGPPGSN 911
Query: 126 DEEEPDGVPEKGKSSGPSARKG 147
P G P GP +G
Sbjct: 912 GNPGPPGPPGPSGKDGPKGARG 933
Score = 40.8 bits (94), Expect = 0.002
Identities = 39/130 (30%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 31 RAKQNPPGPA----PPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGP 86
R + PPGPA PPG A K G G A A P G AP GP
Sbjct: 824 RGETGPPGPAGFAGPPGADGQPGA-KGEQGEAGQKGDAGAPG-----PQGPSGAPGPQGP 877
Query: 87 GGVNCAVGSAMLTRAAPGPRRSED--------EPPAASASAAPPPQRDEEEPDGVPEKGK 138
GV G+ R A GP + PP ++ + PP DG
Sbjct: 878 TGVTGPKGA----RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG 933
Query: 139 SSGPSARKGK 148
SGP R G+
Sbjct: 934 DSGPPGRAGE 943
Score = 38.5 bits (88), Expect = 0.009
Identities = 43/153 (28%), Positives = 53/153 (34%), Gaps = 16/153 (10%)
Query: 5 GYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGG--GSSDAAGKP-PAGALGTP 61
G + GL G D + K + PGP P G G G P P GA G P
Sbjct: 555 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEP 614
Query: 62 AAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAAS----- 116
A LP GAP +PG G A G A P R E P S
Sbjct: 615 GKAG----EKGLP-GAPGLRGLPGKDGETGAAGPP--GPAGPAGERGEQGAPGPSGFQGL 667
Query: 117 -ASAAPPPQRDEEEPDGVPEKGKSSGPSARKGK 148
PP + + GVP + + G +G+
Sbjct: 668 PGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGE 700
Score = 38.5 bits (88), Expect = 0.009
Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 30 MRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAA-AAANELNNNLPGGAPAAPAVPGPGG 88
M ++ G A P G D K P GA G + P GA GP G
Sbjct: 751 MPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPG 810
Query: 89 VNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKG 147
+ G+ R APG R E PP + A PP DG P G + +KG
Sbjct: 811 PAGSAGA----RGAPG-ERGETGPPGPAGFAGPP------GADGQPGAKGEQGEAGQKG 858
Score = 37.4 bits (85), Expect = 0.019
Identities = 35/120 (29%), Positives = 39/120 (32%), Gaps = 27/120 (22%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAV 93
Q PGP P G + P+G G P P G A +PGP G
Sbjct: 1139 QGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG--------PSGKDGANGIPGPIG----- 1185
Query: 94 GSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEK 153
PGPR E + A PP P G P G SA G G EK
Sbjct: 1186 --------PPGPRGRSGE----TGPAGPPGNPGPPGPPGPP--GPGIDMSAFAGLGPREK 1231
Score = 37.0 bits (84), Expect = 0.025
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 21/130 (16%)
Query: 34 QNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPG--GAPAAPAVPGP----- 86
+ PPGP P G + G G P + PG G P P PGP
Sbjct: 119 KGPPGPQGPAGEQGPRGDRGDKGEKGAP-GPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG 177
Query: 87 -------GGVNCAVGSAML--TRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKG 137
GG + G A L + GP P A AP PQ + P G P +
Sbjct: 178 NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA---GAPGPQGFQGNP-GEPGEP 233
Query: 138 KSSGPSARKG 147
SGP +G
Sbjct: 234 GVSGPMGPRG 243
Score = 33.9 bits (76), Expect = 0.21
Identities = 30/112 (26%), Positives = 35/112 (31%), Gaps = 13/112 (11%)
Query: 37 PGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSA 96
PGP P G P G G P A G PGP G A G A
Sbjct: 434 PGPRGPPGPQGATGPLGPKGQTGEPGIAGFK--------GEQGPKGEPGPAGPQGAPGPA 485
Query: 97 MLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGK 148
G R + E P PP +R G P + +GP G+
Sbjct: 486 ----GEEGKRGARGE-PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGE 532
Score = 33.9 bits (76), Expect = 0.21
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 14/163 (8%)
Query: 31 RAKQNP---PGPAPPGGGSSDAAGKPPAGALGTPAAAA--ANELNNNLPG--GAPAAPAV 83
+ +Q P PGPA P G A + GA G P PG G P +
Sbjct: 464 KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGL 523
Query: 84 PGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSSGPS 143
GP G G + L GP+ + +P P + P +GK GPS
Sbjct: 524 AGPKGAPGERGPSGLA----GPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK-VGPS 578
Query: 144 ARKGK-GQIEKRKLREKRRSTGVVNIPAAECLDEYEDDEAGQK 185
G+ G+ + R GV+ P + + E +AG+K
Sbjct: 579 GAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANG-EPGKAGEK 620
Score = 33.9 bits (76), Expect = 0.21
Identities = 44/176 (25%), Positives = 58/176 (32%), Gaps = 31/176 (17%)
Query: 5 GYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPA-PPG--GGSSDAAGKPPAGALGTP 61
G R G G E K + PPGP PPG G + + + GA G P
Sbjct: 987 GQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPP 1046
Query: 62 AAAAANELNNNL-------PGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPA 114
A + + GAP P PGP G G R E
Sbjct: 1047 GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD-----------RGEAGAQG 1095
Query: 115 ASASAAPPPQRDEEEPDGVPEKGKSSGPSARKGK-GQIEKRKLREKRRSTGVVNIP 169
+ P R + P GP KG+ G+ +R L+ R TG+ +P
Sbjct: 1096 PMGPSGPAGARGIQGP---------QGPRGDKGEAGEPGERGLKGHRGFTGLQGLP 1142
Score = 33.5 bits (75), Expect = 0.28
Identities = 39/124 (31%), Positives = 44/124 (35%), Gaps = 23/124 (18%)
Query: 36 PPG----PAPPGG-GSSDAAG-KPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGV 89
PPG P PPG G S G K G G P A L P G P PG G
Sbjct: 907 PPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG--PAGPPGEKGEPGDDGP 964
Query: 90 NCAVGSAMLTRAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVP----EKGKSSGPSAR 145
+ A G PGP+ + P QR E G+P E GK P A
Sbjct: 965 SGAEG-------PPGPQGLAGQ----RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAS 1013
Query: 146 KGKG 149
+G
Sbjct: 1014 GDRG 1017
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.127 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,829,623
Number of Sequences: 37866
Number of extensions: 1128220
Number of successful extensions: 13708
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 1471
Number of HSP's that attempted gapping in prelim test: 8231
Number of HSP's gapped (non-prelim): 5602
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.