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Search of human proteins with 54633344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54633344 RNA binding motif protein, Y-linked, family 1,
member B [Homo sapiens]
(496 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 1051 0.0
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 1048 0.0
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 1046 0.0
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 1046 0.0
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 1043 0.0
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 1043 0.0
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 349 3e-96
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 338 5e-93
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 338 5e-93
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 253 3e-67
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 181 2e-45
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 165 1e-40
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 165 1e-40
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 103 3e-22
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 87 3e-17
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 71 2e-12
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 68 2e-11
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 67 3e-11
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 67 3e-11
gi|57864582 hornerin [Homo sapiens] 65 1e-10
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 65 1e-10
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 64 3e-10
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 64 3e-10
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 64 4e-10
gi|148612890 serine-arginine repressor protein [Homo sapiens] 62 1e-09
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 62 1e-09
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 62 2e-09
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 61 2e-09
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 61 2e-09
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 61 2e-09
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 1051 bits (2718), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 1048 bits (2709), Expect = 0.0
Identities = 495/496 (99%), Positives = 495/496 (99%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA GSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 1046 bits (2706), Expect = 0.0
Identities = 494/496 (99%), Positives = 495/496 (99%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGT+HGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA GSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 1046 bits (2704), Expect = 0.0
Identities = 494/496 (99%), Positives = 494/496 (99%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
Sbjct: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
Query: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPS EGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA GSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 1043 bits (2696), Expect = 0.0
Identities = 492/496 (99%), Positives = 492/496 (99%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
AKNAAKDMNG SLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGS GGTR
Sbjct: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
Query: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPS EGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRN RSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 1043 bits (2696), Expect = 0.0
Identities = 492/496 (99%), Positives = 492/496 (99%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 60
Query: 61 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 120
AKNAAKDMNG SLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGS GGTR
Sbjct: 61 AKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120
Query: 121 GWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
GWLPS EGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
Sbjct: 121 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 180
Query: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
Sbjct: 181 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 240
Query: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 300
RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRN RSSR
Sbjct: 241 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNHRSSR 300
Query: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
Sbjct: 301 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 360
Query: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
Sbjct: 361 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 420
Query: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI
Sbjct: 421 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASI 480
Query: 481 VDGGESRSEKGDSSRY 496
VDGGESRSEKGDSSRY
Sbjct: 481 VDGGESRSEKGDSSRY 496
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 349 bits (896), Expect = 3e-96
Identities = 207/383 (54%), Positives = 246/383 (64%), Gaps = 41/383 (10%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ETNEK L+AVFGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+SG RR PP R+R P LR RG GGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 119
Query: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGPPPK+SAPS RS+S MG
Sbjct: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 178
Query: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 179 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
Query: 295 NRRSSRETREYAPPSRGHG--YRDYGHSR-------------RHESYSRG-------YRN 332
N RS+ TR PPS G Y DY SR R + YS G R
Sbjct: 290 NSRSAPPTRG-PPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERG 348
Query: 333 HPSSRETRDYAPPHRDYAYRDYG 355
P S E R Y PP Y+ G
Sbjct: 349 LPPSME-RGYPPPRDSYSSSSRG 370
Score = 178 bits (451), Expect = 1e-44
Identities = 128/277 (46%), Positives = 160/277 (57%), Gaps = 20/277 (7%)
Query: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
PPSRG D G+S N + SSRG + R PP + A R
Sbjct: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181
Query: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 182 PVSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
Query: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
P RDY YRDYGHSS D++ SRGYS DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQRNPPSLG 461
PP RGP SYGGS+ + YS++RD YG S +SYSS D + R+ V R+++ PPS+
Sbjct: 295 PPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME 354
Query: 462 RVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
R P PR++Y SSS A G G SRS++G SRY
Sbjct: 355 RGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 338 bits (868), Expect = 5e-93
Identities = 210/423 (49%), Positives = 256/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R PP R+R P + RG GGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
Query: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
Query: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
Query: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
Query: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
Query: 414 GGS 416
GGS
Sbjct: 377 GGS 379
Score = 165 bits (418), Expect = 8e-41
Identities = 123/276 (44%), Positives = 154/276 (55%), Gaps = 19/276 (6%)
Query: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
Query: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
Query: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
Query: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
P R++Y SSS A G G SRS++G SRY
Sbjct: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 338 bits (868), Expect = 5e-93
Identities = 210/423 (49%), Positives = 256/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R PP R+R P + RG GGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
Query: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
Query: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
Query: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
Query: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
Query: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
Query: 414 GGS 416
GGS
Sbjct: 377 GGS 379
Score = 165 bits (418), Expect = 8e-41
Identities = 123/276 (44%), Positives = 154/276 (55%), Gaps = 19/276 (6%)
Query: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
Query: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
Query: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
Query: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
P R++Y SSS A G G SRS++G SRY
Sbjct: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 253 bits (646), Expect = 3e-67
Identities = 174/373 (46%), Positives = 213/373 (57%), Gaps = 35/373 (9%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
MVEAD PGKLFIGGLN ET+EK L+A FGK+G I EVLL+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
DAK AA+DMNGKSL GKAIKV QA KP+F+S R PP SR R LR RG GG
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR--PRFLRGTRGGGGGP 118
Query: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSN-SWM 178
R PS+ G DDGGYT D + SR +P+KRGP R GPPPK++APS ARS+ M
Sbjct: 119 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGM 177
Query: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSRG 237
+ + R+ Y PPRR + R+ + R +GY++ DG + +E R +AP
Sbjct: 178 RGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGE 237
Query: 238 YAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRG---HAYRDYGHSR------ 284
Y +RD GHS+ RD+ RGY R+ R+ RDY SRG + YG R
Sbjct: 238 YTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRGSHREPFESYGELRGAAPGR 296
Query: 285 -RDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDY 342
SY G R E R Y+P + G Y S R + YSRG H R R
Sbjct: 297 GTPPSYGGGGR----YEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRG--RHRVGRPDRGL 350
Query: 343 A-------PPHRD 348
+ PP RD
Sbjct: 351 SLSMERGCPPQRD 363
Score = 105 bits (261), Expect = 1e-22
Identities = 90/258 (34%), Positives = 115/258 (44%), Gaps = 28/258 (10%)
Query: 234 PSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDES 288
PSRG D G++ + D SR + R PP + A R G R +
Sbjct: 122 PSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRA 181
Query: 289 YSRGYRNRRSSRETREYAPPSRGH--GYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346
+ R+ S RE PP R G RD G+S R SR YR E R +AP
Sbjct: 182 LAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYR------EPRGFAPSP 235
Query: 347 RDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPP 405
+Y +RDYGHSS D+ RGYS DGYG RD+ +HLS S+R+ + YG GA P
Sbjct: 236 GEYTHRDYGHSSVRDDCPLRGYSDRDGYG-GRDRDYGDHLSRGSHREPFESYGELRGAAP 294
Query: 406 ARGPRMSYGGS---------TCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456
RG SYGG + AYS RD Y S+ D + R V R D+
Sbjct: 295 GRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSY----GRSDRYSRGRHRVGRPDRGL 350
Query: 457 PPSLGRVLPDPREAYGSS 474
S+ R P R++Y S
Sbjct: 351 SLSMERGCPPQRDSYSRS 368
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 181 bits (458), Expect = 2e-45
Identities = 167/479 (34%), Positives = 212/479 (44%), Gaps = 61/479 (12%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
M+EAD P KLFIGGLN +T+EK LKA FGK+G I +V L+KDR T+KSRGFAF+TFE+PA
Sbjct: 1 MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPA 60
Query: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
DAK AA+DMNGK L GKAI V Q KP+F+S R PP S S S S R GG+
Sbjct: 61 DAKAAARDMNGKYLDGKAIMVAQTIKPAFKS-SRWVPPTPG---SGSRSRFSHRTRGGGS 116
Query: 120 RGWLPSQEGHLDDG-GYTPDLKMSYSRGLIPVKRGPSSRS-GGPPPKKSAPSAVARS-NS 176
P +G DDG GY + R +P KRGP R PP K++ PS++A S
Sbjct: 117 SPQRPPSQGRPDDGRGYAGYFDLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGC 176
Query: 177 WMGSQGPMSQRRENY-GVPPR------------RATISSWRNDRMSTRHDGYATNDGNH- 222
M + P ++ Y G+ PR R++++ M + DG
Sbjct: 177 GMRGKAPTVSGQDGYSGLQPRRWAGPPHKRAVPRSSLARIGGSGMPGKAPAVWGQDGYSG 236
Query: 223 -------PSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGH 275
P C++ D+ P R Y SR Y H S + R +
Sbjct: 237 PRVREPLPPCRDPGDFVPALRDY--------------SRRYYGHSSVPDYRPLRGDGNQN 282
Query: 276 AYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPS 335
YR H D YR S A P G YG R+E Y + S
Sbjct: 283 GYRGRDHEYTDHPSKGSYREPLKSYGGPCGAAPVWGTP-PSYGGGCRYEEYQGNSPDACS 341
Query: 336 SRETRDYAPPHRDYAY-RDY---GHSSWDEHSSRGYSYHDGYGEA------LGRDHSEHL 385
+ + P AY RD+ +S SS GYS D YGE GR H
Sbjct: 342 EGRSSEALPVVLPDAYSRDHSPKAYSGGRSSSSNGYSRSDRYGEEGCYEEYRGRSPDAHS 401
Query: 386 SGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRD----RYGRSWESYSSCGD 440
G + + YG SH G Y G + A S R GRS ++YS D
Sbjct: 402 GGRN--SSSNSYGQSHHY-GGEGRYEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHD 457
Score = 53.1 bits (126), Expect = 6e-07
Identities = 121/474 (25%), Positives = 171/474 (36%), Gaps = 91/474 (19%)
Query: 60 DAKNAAKDMNGKS-LHGKAIKVEQAKKPSFQSG-GRRRPPASSRNRSPSGSLRSARGSRG 117
DA + D +G+S +G + E+ + + G R P A S G S++ +R
Sbjct: 648 DAYSGGHDSSGQSNCYGGGGRYEEYRGRLLDANSGGRSPDAYS-----GGHDSSSQSNRY 702
Query: 118 GTRGWLPSQEGHLDD---GGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARS 174
G G GH D GG +PD +YSRG S GG A S+
Sbjct: 703 GGGGRYEEYRGHSLDANSGGRSPD---TYSRG--HDSSSQSDHYGGGGRSLDANSSGRLP 757
Query: 175 NSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN--DGNHPSC------- 225
+++ G S R YG R +R + G + N G H S
Sbjct: 758 DAYSGGHDS-SSRSHRYGGGGR---YEEYRGRSLDANSGGRSPNAYSGGHNSSSRNDPCR 813
Query: 226 -----QETRDYAPPSRGYAYRDNGHSNRDEHSSRGY-RNHR-------SSRETRDYAPPS 272
+E R ++ + + N +S + SS Y R+HR R + S
Sbjct: 814 GGGRYEENRGHSLDANSGGHSPNAYSGGRDSSSNSYDRSHRYGGGGHYEEYRGRSHDTHS 873
Query: 273 RGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDY-GHSRRHESYSRGYR 331
RG + + E+YSRG + +S ++ RG Y +Y G S RG
Sbjct: 874 RGRSPDAHSGDHYTEAYSRGRDSFSNSYGRSDHY--GRGGCYEEYQGRSPNAYGGGRGLN 931
Query: 332 NHPSSR-ETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSY 390
+ +S + Y R Y +Y S D HS GRD S G S
Sbjct: 932 SSNNSHGRSHRYGGGGR---YEEYRGPSPDAHSG-------------GRDSSIKSYGLS- 974
Query: 391 RDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDR----YGRSWESYSSCGDFHYCDR 446
RYG G Y GS AYS DR YGRS D + R
Sbjct: 975 ----DRYG-------GGGHYEEYQGSLPDAYSGDHDRSSNSYGRS--------DRYSRGR 1015
Query: 447 EHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDGG---ESRSEKGDS-SRY 496
+ V R D+ P + P ++Y S + GG R E+G+ SRY
Sbjct: 1016 DRVGRPDRGLPLPMETGSPPLHDSYSRSG--CRVPRGGGRQGGRFERGEGRSRY 1067
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 165 bits (417), Expect = 1e-40
Identities = 91/133 (68%), Positives = 102/133 (76%), Gaps = 3/133 (2%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
M EAD GK FIGGLN ETN+K L+AVFGK+G I EV L+KD T+KSRGFAFITFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+S GRR PP R+R P LR RG GGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
Query: 120 RGWLPSQEGHLDD 132
R PS+ GH+DD
Sbjct: 120 RE-PPSRGGHMDD 131
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 165 bits (417), Expect = 1e-40
Identities = 91/133 (68%), Positives = 102/133 (76%), Gaps = 3/133 (2%)
Query: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPA 59
M EAD GK FIGGLN ETN+K L+AVFGK+G I EV L+KD T+KSRGFAFITFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+S GRR PP R+R P LR RG GGT
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFES-GRRGPPPPPRSRGPPRVLRGGRGGSGGT 119
Query: 120 RGWLPSQEGHLDD 132
R PS+ GH+DD
Sbjct: 120 RE-PPSRGGHMDD 131
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 103 bits (258), Expect = 3e-22
Identities = 66/154 (42%), Positives = 86/154 (55%), Gaps = 24/154 (15%)
Query: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAK 62
A GKLF+GGL+ +TNE+ L+ VF K+G ISEV+++KDR T +SRGF F+TFEN DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 63 NAAKDMNGKSLHGKAIKVEQAKKPS----------------FQSGGRRRPPASSRNRSPS 106
+A MNGKS+ G+ I+V+QA K S F GGR R SR
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
Query: 107 G----SLRSARGSRGGTRGWLPSQEGHLDDGGYT 136
G S G GG+R + S+ GGY+
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRS---QSGGYS 152
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 87.4 bits (215), Expect = 3e-17
Identities = 57/129 (44%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAK 66
GKLF+GGLN T+E+ L+ F GPISEV+++KDR T +SRGF FITF NP A A +
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 67 DMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQ 126
MNG+SL G+ I+V+ A K + G R + R S S RG GG +G+ +
Sbjct: 66 AMNGESLDGRQIRVDHAGK---SARGTRGGGFGAHGRGRSYS----RG--GGDQGYGSGR 116
Query: 127 EGHLDDGGY 135
GGY
Sbjct: 117 YYDSRPGGY 125
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 71.2 bits (173), Expect = 2e-12
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKDM 68
L + GL+ T E+ L+ VF K+GPI++V ++ D+ S+ SRGFAF+ FEN DAK A +
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 69 NGKSLHGKAIKVEQA--KKPSFQSGG---RRRPPASSRNR------------SPSGSLRS 111
NG L G+ I+V+ + K+P + G R SSR R RS
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRS 239
Query: 112 ARGSRGGTRGWLPSQE 127
RG GG GW +Q+
Sbjct: 240 YRGGGGGGGGWRAAQD 255
Score = 36.2 bits (82), Expect = 0.071
Identities = 70/285 (24%), Positives = 103/285 (36%), Gaps = 35/285 (12%)
Query: 89 QSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLI 148
Q+ G R ++SR+ S GS +SAR + +R S+E + S SR
Sbjct: 7 QNYGERESRSASRSGSAHGSGKSARHTPARSR----SKEDSRRSRSKSRSRSESRSRSRR 62
Query: 149 PVKRGPS-SRSGGPPPKKSAPSAVARS--NSWMGSQGPMSQRRENYGV---PPRRATISS 202
+R + SRS ++S + +R S PMS RR + G P +
Sbjct: 63 SSRRHYTRSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGV 122
Query: 203 WRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR-----GYAYRDNGHSNRDEHSSRGYR 257
+ +T D P + Y SR + Y +N ++
Sbjct: 123 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 182
Query: 258 NHRSSRETRDYAPPSRGHAYRD--------YGHSRRDESYSRGYRNRRSSRE--TREYAP 307
R D++ R H YG SRR + Y RGY R+ +R Y
Sbjct: 183 ELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRG 242
Query: 308 PSRGHG------YRDYGHSRRHES--YSRGYRNHPSSRETRDYAP 344
G G RD + RR S YSRG + S +R Y+P
Sbjct: 243 GGGGGGGWRAAQDRDQIYRRRSPSPYYSRG--GYRSRSRSRSYSP 285
Score = 31.6 bits (70), Expect = 1.7
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 242 DNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRE 301
D+G N E SR +R + G + R R + SR R+R SR
Sbjct: 3 DSGEQNYGERESRS--------ASRSGSAHGSGKSARHTPARSRSKEDSR--RSRSKSRS 52
Query: 302 TREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH 346
E SR R Y SR S SR +R S +RDY H
Sbjct: 53 RSESRSRSRRSSRRHYTRSR---SRSRSHRRSRSRSYSRDYRRRH 94
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 67.8 bits (164), Expect = 2e-11
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
L + L T+ L+ VF K+G + +V + +DR T +SRGFAF+ F + DA++A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 69 NGKSLHGKAIKVEQAK--KPSFQSGGRRRPPA--------SSRNRSPSGSLRSARGSRGG 118
+G L G+ ++V+ A+ +P RR PP R+RSP RS SR
Sbjct: 76 DGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSRSRSR 135
Query: 119 TRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNS 176
+R S+ S SR + +S+S KS S+V+RS S
Sbjct: 136 SRSRSRSR------------YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS 181
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 67.4 bits (163), Expect = 3e-11
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
++I + +++ LK +FGK GP V ++ D + KS+GF F++FE DA+ A +MN
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 70 GKSLHGKAIKVEQAKK 85
GK L+GK I V +A+K
Sbjct: 253 GKELNGKQIYVGRAQK 268
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
L++G L+ + E ML F GPI + + +D T +S G+A++ F+ PADA+ A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 69 NGKSLHGKAIKVEQAKK-PSFQSGG 92
N + GK +++ +++ PS + G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 40.0 bits (92), Expect = 0.005
Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
L++ L+ +++ L+ F G I+ ++ + +S+GF F+ F +P +A A +MN
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 70 GKSLHGKAIKVEQAKK 85
G+ + K + V A++
Sbjct: 355 GRIVATKPLYVALAQR 370
Score = 39.7 bits (91), Expect = 0.006
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
G +FI L++ + K L F G I ++ D S+G+ F+ FE A+ A +
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 157
Query: 68 MNGKSLHGKAIKVEQAK 84
MNG L+ + + V + K
Sbjct: 158 MNGMLLNDRKVFVGRFK 174
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 67.4 bits (163), Expect = 3e-11
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
++I + +++ LK +FGK GP V ++ D + KS+GF F++FE DA+ A +MN
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 70 GKSLHGKAIKVEQAKK 85
GK L+GK I V +A+K
Sbjct: 253 GKELNGKQIYVGRAQK 268
Score = 48.9 bits (115), Expect = 1e-05
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68
L++G L+ + E ML F GPI + + +D TS S +A++ F++ DA++A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 69 NGKSLHGKAIKVEQAKK-PSFQSGG 92
N + GK +++ +++ PS + G
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 44.3 bits (103), Expect = 3e-04
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69
L++ L+ +++ L+ F G I+ ++ + +S+GF F+ F +P +A A +MN
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 70 GKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGW----LPS 125
G+ + K + V A++ R+ ++ S+R+ R G+ +P
Sbjct: 355 GRIVATKPLYVALAQRKE-----ERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQ 409
Query: 126 QEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAV 171
+ H Y P +++ R P R +++ P P ++ PSA+
Sbjct: 410 TQNH---AAYYPPSQIARLR---PSPRW-TAQGARPHPFQNKPSAI 448
Score = 43.5 bits (101), Expect = 4e-04
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
G +F+ L++ N K L G I ++ D S+G+ F+ FE A+ A K
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKK 157
Query: 68 MNGKSLHGKAIKVEQAK 84
MNG L+G+ + V Q K
Sbjct: 158 MNGMLLNGRKVFVGQFK 174
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 65.1 bits (157), Expect = 1e-10
Identities = 87/363 (23%), Positives = 126/363 (34%), Gaps = 66/363 (18%)
Query: 100 SRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSG 159
S++ S SG S++G G T G S H G + SY + +SR
Sbjct: 362 SKHGSGSGH-SSSQGQHGSTSGQASSSGQH----GSSSRQSSSYGQ------HESASRHS 410
Query: 160 GPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATND 219
+ S+ S + + GS S +G R++ S GY++
Sbjct: 411 SGRGQHSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSG-----PYVSGSGYSSGF 465
Query: 220 GNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAY-- 277
G+H S E S GY +G + H G R+ +SSR R + +Y
Sbjct: 466 GHHESSSEH------SSGYTQHGSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQ 519
Query: 278 ------RDYGHSR------RDESYSRGYRNRRSSRETREYAPPSRGHGYRD--------- 316
+ GHSR + S SRG R+ SR++ Y P G G
Sbjct: 520 HGSGSRQSLGHSRHGSGSGQSPSPSRG-RHESGSRQSSSYGPHGYGSGRSSSRGPYESGS 578
Query: 317 -----YGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHD 371
GH S GY H SS ++ H + SS +H
Sbjct: 579 GHSSGLGHQESRSGQSSGYGQHGSS---SGHSSTHGQHGSTSGQSSSCGQH--------- 626
Query: 372 GYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRS 431
G H +H SGSS + G+ G P+RG +G H+ S + G
Sbjct: 627 GATSGQSSSHGQHGSGSSQSSRYGQQGSGSGQSPSRG---RHGSDFGHSSSYGQHGSGSG 683
Query: 432 WES 434
W S
Sbjct: 684 WSS 686
Score = 63.9 bits (154), Expect = 3e-10
Identities = 95/402 (23%), Positives = 142/402 (35%), Gaps = 72/402 (17%)
Query: 92 GRRRPPASSRNRSPSGSLRSAR-GSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPV 150
G + P+ SR R SGS +S+ G G GW S+ + G++ L SR
Sbjct: 1942 GSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSS 2001
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST 210
G S G + + +S G G S + ++G ++ S+
Sbjct: 2002 GYGQHGSSSGHSSTHGQHGSASGQSSSCGQHGASSGQSSSHG-----------QHGSGSS 2050
Query: 211 RHDGYA---TNDGNHPSCQETRDYAPPSRGYAYRDNGH---SNRDEHS-----SRGYRNH 259
+ GY + G P + + S Y +G S+ +H S G+ +H
Sbjct: 2051 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGPGLGESSGFGHH 2110
Query: 260 RSSR-ETRDYAPPSRGHAYRD-YG-HSRRDESYSRGYRNRRSSRETREYA---------- 306
SS ++ Y+ G + YG H R SRG R+ SS + Y
Sbjct: 2111 ESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSRYGQHGSGSRQSS 2170
Query: 307 -----------PPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPH--------- 346
PSRG GHS H + G SSR + H
Sbjct: 2171 GHGRQGSGSGHSPSRGRHGSGSGHSSSHGQHGSG-SGRSSSRGPYESRSGHSSVFGQHES 2229
Query: 347 ---RDYAYRDYGHS-----SWDEHSSRG--YSYHDGYGEALGR--DHSEHLSGSSYRDAL 394
AY +G S +H S S D G + G+ H +H SGSS +
Sbjct: 2230 GSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSY 2289
Query: 395 QRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYS 436
+ G+ G P+RG +G + H+ S + G W S S
Sbjct: 2290 GQQGSGSGQSPSRG---RHGSGSGHSSSYGQHGSGSGWSSSS 2328
Score = 63.2 bits (152), Expect = 5e-10
Identities = 96/406 (23%), Positives = 143/406 (35%), Gaps = 80/406 (19%)
Query: 92 GRRRPPASSRNRSPSGSLRSARGSRGGT-RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPV 150
G + P+ SR R SGS +S+ S G+ GW S+ + ++ L SR
Sbjct: 1472 GSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSHSSGLGHRESRSGQSS 1531
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST 210
G S G + + +S G G S + ++G ++ S+
Sbjct: 1532 GYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHG-----------QHGSGSS 1580
Query: 211 RHDGYA---TNDGNHPSCQETRDYAPPSRGYAYRDNGH---SNRDEHSS-----RGYRNH 259
+ GY + G P + + S Y +G S+ +H S G+ +H
Sbjct: 1581 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHH 1640
Query: 260 RSSR-ETRDYAPPSRGHAYRD-YG-HSRRDESYSRGYRNRRSSRETREYAP--------- 307
SS ++ Y+ G + YG H R SRG R+ SSR + Y
Sbjct: 1641 ESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSRSSSRYGQHGSGSRQSS 1700
Query: 308 ------------PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYG 355
PSRG GHS H + G SSR + H +
Sbjct: 1701 GHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSG-SGRSSSRGPYESRSGHSSVFGQ--- 1756
Query: 356 HSSWDEHSSRGYSYH-----------------------DGYGEALGRD--HSEHLSGSSY 390
H S HSS YS H D G + G+ H +H SGSS
Sbjct: 1757 HESGSGHSS-AYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQ 1815
Query: 391 RDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYS 436
+ + G+ G P+RG +G + H+ S + G W S S
Sbjct: 1816 SSSYGQQGSGSGQSPSRG---RHGSGSGHSSSYGQHGSGSGWSSSS 1858
Score = 55.8 bits (133), Expect = 9e-08
Identities = 94/375 (25%), Positives = 132/375 (35%), Gaps = 53/375 (14%)
Query: 87 SFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRG 146
S+ G +S + S S +S+RG R G+ S G G + S G
Sbjct: 1179 SYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGS-----RQSSGHG 1233
Query: 147 LIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRND 206
++G S SG P + S + S+S G G S R + G R+ SS
Sbjct: 1234 ----RQG--SGSGHSPSRGRHGSGLGHSSSH-GQHGSGSGRSSSRGPYESRSGHSSVFGQ 1286
Query: 207 RMS--------TRH---DGYATNDGNHPSCQ---ETRDYAPPSRGYAYRDNGHSNRDEHS 252
S ++H G+ + G H S T D S G + GH
Sbjct: 1287 HESGSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQS-SSYGHRGSGSSQ 1345
Query: 253 SRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGH 312
S GY H + PSRG GHS + G SS + S G
Sbjct: 1346 SSGYGRHGAGSGQS----PSRGRHGSGSGHSSSYGQHGSGSGWSSSSGRHGSGSGQSSGF 1401
Query: 313 GYRDY---------------GHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHS 357
G+ + GHS +E + G R+ SSR R + +Y +G
Sbjct: 1402 GHHESSSWQSSGCTQHGSGSGHSSSYEQH--GSRSGQSSRGERHGSSSGSSSSYGQHGSG 1459
Query: 358 SWDEHSSRGYSYH-DGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGS 416
S S G+ H G G++ H SGS + YG+ G +RGP S G S
Sbjct: 1460 S---RQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYES-GSS 1515
Query: 417 TCHAYSNTRDRYGRS 431
+ R G+S
Sbjct: 1516 HSSGLGHRESRSGQS 1530
Score = 55.5 bits (132), Expect = 1e-07
Identities = 90/394 (22%), Positives = 124/394 (31%), Gaps = 56/394 (14%)
Query: 69 NGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRS-ARGSRGGTRGWLPSQE 127
+G+S G+ + G +S R SGS S +RG G G S
Sbjct: 2140 SGQSSRGERHGSSSGSSSRYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGSGHSSSHG 2199
Query: 128 GHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
H G S SRG + G SS G SA ++ S G Q
Sbjct: 2200 QHGSGSG------RSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQH 2253
Query: 188 RENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSN 247
G S S G ++ + Q + PSRG +GHS
Sbjct: 2254 GSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQGSGSGQSPSRGRHGSGSGHS- 2312
Query: 248 RDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAP 307
SS G S + S +GH S GY S
Sbjct: 2313 ----SSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGS------- 2361
Query: 308 PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGY 367
GHS +E + G R+ SSR R + +Y +G S S G+
Sbjct: 2362 ----------GHSSSYEQH--GSRSGQSSRGERHGSSSGSSSSYGQHGSGS---RQSLGH 2406
Query: 368 SYH-DGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGG----------- 415
H G G++ H SGS + YG+ G +RGP S G
Sbjct: 2407 GQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSSGLGHRESR 2466
Query: 416 ----------STCHAYSNTRDRYGRSWESYSSCG 439
+ +S+T ++G + SSCG
Sbjct: 2467 SGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCG 2500
Score = 54.7 bits (130), Expect = 2e-07
Identities = 112/467 (23%), Positives = 150/467 (32%), Gaps = 55/467 (11%)
Query: 69 NGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRS-ARGSRGGTRGWLPSQE 127
+G+S G+ + G +S R SGS S +RG G G S
Sbjct: 1200 SGQSSRGERHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGLGHSSSHG 1259
Query: 128 GHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
H G S SRG + G SS G SA ++ S G Q
Sbjct: 1260 QHGSGSG------RSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQH 1313
Query: 188 RENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSN 247
G S S H G ++ + PSRG +GHS+
Sbjct: 1314 GSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGYGRHGAGSGQSPSRGRHGSGSGHSS 1373
Query: 248 R-DEHSS------------------RGYRNHRSSRETRDYAPP---SRGHAYRDYGHSRR 285
+H S G+ +H SS GH+ H R
Sbjct: 1374 SYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGCTQHGSGSGHSSSYEQHGSR 1433
Query: 286 DESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPP 345
SRG R+ SS + Y G G R S H + G PS R +
Sbjct: 1434 SGQSSRGERHGSSSGSSSSYG--QHGSGSRQ---SLGHGQHGSGSGQSPSPSRGRHGSGS 1488
Query: 346 HRDYAYRDYGH-SSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
+ +Y YG S W SSRG Y G + G H E SG S ++G+S G
Sbjct: 1489 GQSSSYSPYGSGSGWS--SSRG-PYESGSSHSSGLGHRESRSGQS--SGYGQHGSSSGHS 1543
Query: 405 PARGPRMS----------YGGSTCHAYSNTRDRYGRSWES-YSSCGDFHYCDREHVCR-K 452
G S +G S+ + S+ + G S S Y G H R
Sbjct: 1544 STHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGS 1603
Query: 453 DQRNPPSLGRVLPDPREAYGSSSYVASIVDG---GESRSEKGDSSRY 496
R PS GR + S + + + + G S G SS Y
Sbjct: 1604 GSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSY 1650
Score = 53.9 bits (128), Expect = 3e-07
Identities = 69/356 (19%), Positives = 118/356 (33%), Gaps = 57/356 (16%)
Query: 102 NRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGP 161
N+ S + S G + + G L G + ++S+ R G + G
Sbjct: 120 NKRQESSFSHSSWSAGENDSYSRNVRGSLKPGTESISRRLSFQRDF----SGQHNSYSGQ 175
Query: 162 PPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGN 221
++ + +S G G S + NYG S+ +D + + G
Sbjct: 176 SSSYGEQNSDSHQSSGRGQCGSGSGQSPNYG--------QHGSGSGQSSSNDTHGSGSGQ 227
Query: 222 HPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYG 281
+ + + S GY+ +G + + G R+ +SSR R + +Y +G
Sbjct: 228 SSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRSGQSSRGERHRSSSGSSSSYGQHG 287
Query: 282 HSRRDE--------------------------------------SYSRGYRNRRSSRET- 302
R SYSRG+ S + +
Sbjct: 288 SGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSG 347
Query: 303 --REYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYG-HSSW 359
+ + + GY +G H S S+G S + + YG H S
Sbjct: 348 FGQHESGSGQSSGYSKHGSGSGHSS-SQGQHGSTSGQASSSGQHGSSSRQSSSYGQHESA 406
Query: 360 DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGG 415
HSS + G G++ G H + SGS + ++GT G + GP +S G
Sbjct: 407 SRHSSGRGQHSSGSGQSPG--HGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSG 460
Score = 52.8 bits (125), Expect = 7e-07
Identities = 89/394 (22%), Positives = 125/394 (31%), Gaps = 56/394 (14%)
Query: 69 NGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRS-ARGSRGGTRGWLPSQE 127
+G+S G+ + G +S R SGS +S +RG G G S
Sbjct: 1670 SGQSSRGERHGSSSRSSSRYGQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHG 1729
Query: 128 GHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
H G S SRG + G SS G SA ++ S G Q
Sbjct: 1730 QHGSGSG------RSSSRGPYESRSGHSSVFGQHESGSGHSSAYSQHGSGSGHFCSQGQH 1783
Query: 188 RENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSN 247
G S S G ++ + Q + PSRG +GHS
Sbjct: 1784 GSTSGQSSTFDQEGSSTGQSSSHGQHGSGSSQSSSYGQQGSGSGQSPSRGRHGSGSGHS- 1842
Query: 248 RDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAP 307
SS G S + S +GH S GY S
Sbjct: 1843 ----SSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHESSSWQSSGYTQHGSGS------- 1891
Query: 308 PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGY 367
GHS +E + G R+ SSR + + +Y +G S S G+
Sbjct: 1892 ----------GHSSSYEQH--GSRSGQSSRGEQHGSSSGSSSSYGQHGSGS---RQSLGH 1936
Query: 368 SYH-DGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGG----------- 415
H G G++ H SGS + YG+ G +RGP S G
Sbjct: 1937 GQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHSSGLGHRESR 1996
Query: 416 ----------STCHAYSNTRDRYGRSWESYSSCG 439
+ +S+T ++G + SSCG
Sbjct: 1997 SGQSSGYGQHGSSSGHSSTHGQHGSASGQSSSCG 2030
Score = 52.4 bits (124), Expect = 1e-06
Identities = 85/351 (24%), Positives = 118/351 (33%), Gaps = 39/351 (11%)
Query: 98 ASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSR 157
+SS + S S +S+RG R G+ S G G + G R
Sbjct: 2364 SSSYEQHGSRSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGR 2423
Query: 158 SGGPPPKKSAPSAVARSNSWMGSQGPM---SQRRENYGVPPRRATISSWRNDR-----MS 209
G + S+ S + W S+GP S G R+ SS S
Sbjct: 2424 HGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHS 2483
Query: 210 TRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYA 269
+ H + + G SC + + S + +G S S GY S +
Sbjct: 2484 STHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGSSQ-----SSGYGRQGSG------S 2532
Query: 270 PPSRGHAYRDYGHSRRDESYSR-GYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSR 328
S GH R G SR+ SY R G + RSS + + G+ GH S
Sbjct: 2533 GQSPGHGQRGSG-SRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGF---GHHESSSGQSS 2588
Query: 329 GYRNHPS-SRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSG 387
Y H S S + Y H S SSRG + G + + +H SG
Sbjct: 2589 SYSQHGSGSGHSSGYGQ-----------HGSRSGQSSRGERHGSSSGSS--SHYGQHGSG 2635
Query: 388 SSYRDALQRYGTSHGAPPARGPRMS-YGGSTCHAYSNTRDRYGRSWESYSS 437
S R G+ G P+RG S G S+ H + S Y S
Sbjct: 2636 SRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGRSSSRGPYES 2686
Score = 51.6 bits (122), Expect = 2e-06
Identities = 92/414 (22%), Positives = 140/414 (33%), Gaps = 61/414 (14%)
Query: 62 KNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRG 121
++A+ +G+ HG + P G + S R SGS RS+ R G+
Sbjct: 871 ESASHHASGRGRHGSG----SGQSPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGS 926
Query: 122 WLPSQEGHLDDGGYTPDLKMSYS-RGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSW--- 177
S GH G + S G SRSG + S+ S+S+
Sbjct: 927 GQSSGFGHKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRSEQHGSSSGSSSSYGQH 986
Query: 178 ------------------------MGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHD 213
G G S + +YG P R+ S W + R
Sbjct: 987 GSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYG--PYRSG-SGWSSSR-----G 1038
Query: 214 GYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSR 273
Y + G+ + S GY + + H G + +SS + A +
Sbjct: 1039 PYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQ 1098
Query: 274 GHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNH 333
++ +G S S GY + S + S GHG R G SR+ SY R
Sbjct: 1099 SSSHGQHGSG---SSQSSGYGRQGSG------SGQSPGHGQRGSG-SRQSPSYGRHGSGS 1148
Query: 334 PSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDA 393
S + + + + +GH S YS H G G + +H S S
Sbjct: 1149 GRSSSSGQHGSGLGESS--GFGHHESSSGQSSSYSQH-GSGSGHSSGYGQHGSRSGQSSR 1205
Query: 394 LQRYGTSHGAPP-----ARGPRMSYG---GSTCHAYSNTRDRYGRSWESYSSCG 439
+R+G+S G+ G R S G + +S +R R+G SS G
Sbjct: 1206 GERHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGSGHSPSRGRHGSGLGHSSSHG 1259
Score = 51.2 bits (121), Expect = 2e-06
Identities = 95/421 (22%), Positives = 139/421 (33%), Gaps = 83/421 (19%)
Query: 92 GRRRPPASSRNRSPSGSLRSARGSRGGT-RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPV 150
G + P+ SR R SGS +S+ S G+ GW S+ + G++ L SR
Sbjct: 2412 GSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSS 2471
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST 210
G S G + + +S G G S + ++G ++ S+
Sbjct: 2472 GYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHG-----------QHGSGSS 2520
Query: 211 RHDGYA---TNDGNHPSCQETRDYAPPSRGYAYRDNGH---SNRDEHSS-----RGYRNH 259
+ GY + G P + + S Y +G S+ +H S G+ +H
Sbjct: 2521 QSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHH 2580
Query: 260 RSSR-ETRDYAPPSRGHAYRD-YG-HSRRDESYSRGYRNRRSSRETREYAP--------- 307
SS ++ Y+ G + YG H R SRG R+ SS + Y
Sbjct: 2581 ESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSRQSS 2640
Query: 308 ------------PSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDY------ 349
PSRG GHS H + G SSR + H
Sbjct: 2641 GHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSG-SGRSSSRGPYESRLGHSSVFGQHES 2699
Query: 350 ------AYRDYGHSSW-------------------DEHSSRGYSY---HDGYGEALGRDH 381
AY +G S E SS G S H G G + +
Sbjct: 2700 GSGHSSAYSQHGSGSGHFCSQGQHGSTSGQSSTFDQEGSSTGQSSSYGHRGSGSSQSSGY 2759
Query: 382 SEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDF 441
H +GS + R+G+ G + G S G YS G+ SY G
Sbjct: 2760 GRHGAGSGQSLSHGRHGSGSGQSSSYGQHGS-GSGQSSGYSQHGSGSGQDGYSYCKGGSN 2818
Query: 442 H 442
H
Sbjct: 2819 H 2819
Score = 50.8 bits (120), Expect = 3e-06
Identities = 88/367 (23%), Positives = 122/367 (33%), Gaps = 44/367 (11%)
Query: 89 QSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLI 148
Q G + P+ R+ S SG S+ G G GW S H G + S
Sbjct: 1822 QGSGSGQSPSRGRHGSGSGH-SSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHES---- 1876
Query: 149 PVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSW----R 204
SS + + S + S GS+ S R E +G + SS+
Sbjct: 1877 ------SSWQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRGEQHG--SSSGSSSSYGQHGS 1928
Query: 205 NDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGH------SNRDEHSSRGYRN 258
R S H + + G PS R + + +Y G S S G+ +
Sbjct: 1929 GSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGHSS 1988
Query: 259 HRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
RE+R G GHS + S + + S HG G
Sbjct: 1989 GLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSASGQSSSCGQHGASSGQSSSHGQHGSG 2048
Query: 319 HSRRHESYSRGYRNHPSSRETRDYAPPH--RDYAYRD---YG-HSSWDEHSSRGYSYHDG 372
S+ S GY S +P H R R YG H S SS + G
Sbjct: 2049 SSQ-----SSGYGRQGSGS---GQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGPG 2100
Query: 373 YGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSW 432
GE+ G H E SG S + ++G+ G G S G S+ +R+G S
Sbjct: 2101 LGESSGFGHHESSSGQS--SSYSQHGSGSGHSSGYGQHGSRSGQ-----SSRGERHGSSS 2153
Query: 433 ESYSSCG 439
S S G
Sbjct: 2154 GSSSRYG 2160
Score = 50.8 bits (120), Expect = 3e-06
Identities = 88/367 (23%), Positives = 122/367 (33%), Gaps = 44/367 (11%)
Query: 89 QSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLI 148
Q G + P+ R+ S SG S+ G G GW S H G + S
Sbjct: 2292 QGSGSGQSPSRGRHGSGSGH-SSSYGQHGSGSGWSSSSGRHGSGSGQSSGFGHHES---- 2346
Query: 149 PVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSW----R 204
SS + + S + S GS+ S R E +G + SS+
Sbjct: 2347 ------SSWQSSGYTQHGSGSGHSSSYEQHGSRSGQSSRGERHG--SSSGSSSSYGQHGS 2398
Query: 205 NDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGH------SNRDEHSSRGYRN 258
R S H + + G PS R + + +Y G S S G+ +
Sbjct: 2399 GSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGHSS 2458
Query: 259 HRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYG 318
RE+R G GHS + S + + S HG G
Sbjct: 2459 GLGHRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSG 2518
Query: 319 HSRRHESYSRGYRNHPSSRETRDYAPPH--RDYAYRD---YG-HSSWDEHSSRGYSYHDG 372
S+ S GY S +P H R R YG H S SS + G
Sbjct: 2519 SSQ-----SSGYGRQGSGS---GQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSG 2570
Query: 373 YGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSW 432
GE+ G H E SG S + ++G+ G G S G S+ +R+G S
Sbjct: 2571 LGESSGFGHHESSSGQS--SSYSQHGSGSGHSSGYGQHGSRSGQ-----SSRGERHGSSS 2623
Query: 433 ESYSSCG 439
S S G
Sbjct: 2624 GSSSHYG 2630
Score = 50.1 bits (118), Expect = 5e-06
Identities = 90/418 (21%), Positives = 142/418 (33%), Gaps = 45/418 (10%)
Query: 98 ASSRNRSPSGSLRSAR-GSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSS 156
+SS + SGS +S+R G +G G PS+ H D G++ S GP
Sbjct: 633 SSSHGQHGSGSSQSSRYGQQGSGSGQSPSRGRHGSDFGHSSSYGQHGSGSGWSSSNGPHG 692
Query: 157 RSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYA 216
G S +S+ + G S Y R+ SS S+ G +
Sbjct: 693 SVSGQSSGFGHKSGSGQSSGY-SQHGSGSSHSSGYRKHGSRSGQSSRSEQHGSS--SGLS 749
Query: 217 TNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHA 276
++ G H S S G+ + +G HS R+ SS + + G +
Sbjct: 750 SSYGQHGSGSHQ------SSGHGRQGSGSG----HSPSRVRHGSSSGHSSSHGQHGSGTS 799
Query: 277 YRDY-GHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPS 335
GH + G+ S G GY +G + H S S+G S
Sbjct: 800 CSSSCGHYESGSGQASGFGQHESGS----------GQGYSQHGSASGHFS-SQGRHGSTS 848
Query: 336 SRETRDYAPPHRDYAYRDYG-HSSWDEHSSRGYSYHDGYGEALGR-----------DHSE 383
+ + YG H S H+S + G G++ G +
Sbjct: 849 GQSSSSGQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGR 908
Query: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHY 443
H SGS + R+G+ G G + S G S+ + + + S+E + S
Sbjct: 909 HGSGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHSSSYEQHGSRSGQSS 968
Query: 444 CDREHVCRKDQRNPPSLGRVLPDPREA-----YGSSSYVASIVDGGESRSEKGDSSRY 496
+H + S G+ R++ +GS S + G S G SS Y
Sbjct: 969 RSEQH--GSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSY 1024
Score = 43.9 bits (102), Expect = 3e-04
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 14/193 (7%)
Query: 229 RDYAPPSRGYAYRDN--GHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRD 286
RD++ Y+ + + G N D H S G R + P+ G G S +
Sbjct: 163 RDFSGQHNSYSGQSSSYGEQNSDSHQSSG----RGQCGSGSGQSPNYGQHGSGSGQSSSN 218
Query: 287 ESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESY--SRGYRNHPSSRETRDYAP 344
+++ G + +SS ++ + + GY +G H S G R+ SSR R +
Sbjct: 219 DTHGSG--SGQSSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRSGQSSRGERHRSS 276
Query: 345 PHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
+Y +G S S G+ G G H H SGS + + ++G+
Sbjct: 277 SGSSSSYGQHGSGS---RQSLGHG-RQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYS 332
Query: 405 PARGPRMSYGGST 417
+RG S G T
Sbjct: 333 YSRGHYESGSGQT 345
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 65.1 bits (157), Expect = 1e-10
Identities = 91/330 (27%), Positives = 133/330 (40%), Gaps = 70/330 (21%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKS-RGFAFITFENPADAKNAAKDM 68
L + L T+ L+ VF K+G + +V + ++ +K+ RGFAF+ F + DA++A M
Sbjct: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
Query: 69 NGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEG 128
+G L G+ ++V+ A+ GRR P S + RG +RG
Sbjct: 76 DGAELDGRELRVQVARY------GRRDLPRSRQGE-----------PRGRSRG------- 111
Query: 129 HLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRR 188
GGY + SY R +R SRS GP +S + R + + S+ P S+
Sbjct: 112 ----GGYGRRSR-SYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRY--SRSPYSRS- 163
Query: 189 ENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNR 248
P R+ S R R Y G+H S S GY+ N +R
Sbjct: 164 -----PYSRSRYSRSPYSRSRYRESRYG---GSHYS----------SSGYS---NSRYSR 202
Query: 249 DEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPP 308
HSSR + SS +R + A R + S SR RSS TR +PP
Sbjct: 203 -YHSSRSHSKSGSSTSSRSASTSKSSSARRS-----KSSSVSRSRSRSRSSSMTR--SPP 254
Query: 309 SRGHGYRDYGHSRRHESYSRGYRNHPSSRE 338
R+ +S SR R S E
Sbjct: 255 RVS--------KRKSKSRSRSKRPPKSPEE 276
Score = 37.7 bits (86), Expect = 0.024
Identities = 57/204 (27%), Positives = 76/204 (37%), Gaps = 19/204 (9%)
Query: 236 RGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSR---G 292
RG+A+ H RD + + + + R+ + RD SR+ E R G
Sbjct: 55 RGFAFV-RFHDRRDAQDAEAAMDG-AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGG 112
Query: 293 YRNRRSSRETREYAPPSRGHGYRDYGHS-RRHESYSRGYRNHPSSRETRDYAPPHRD-YA 350
RRS R P R H R G S R S SR YR SR +P R Y+
Sbjct: 113 GYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSR-YRGSRYSRSPYSRSPYSRSRYS 171
Query: 351 YRDYGHSSWDE-------HSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Y S + E +SS GYS R HS+ S +S R A TS +
Sbjct: 172 RSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSA----STSKSS 227
Query: 404 PPARGPRMSYGGSTCHAYSNTRDR 427
R S S + S++ R
Sbjct: 228 SARRSKSSSVSRSRSRSRSSSMTR 251
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 63.9 bits (154), Expect = 3e-10
Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 37/215 (17%)
Query: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKD 67
K+F+GG+ E L+ F K G ++EV++I D + RGF FITFE+ A +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSR---GGTRGWLP 124
M+ + GK ++V++A+ P S++++P S GSR GW
Sbjct: 173 MHFHDIMGKKVEVKRAE------------PRDSKSQAPGQPGASQWGSRVVPNAANGWAG 220
Query: 125 S-----QEGHLDDGGYTPDLKMSYSRGLIPVKRGP------------SSRSGGPPPKKSA 167
Q+G+ G + P + G P RG S+ GG PP +
Sbjct: 221 QPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGF 280
Query: 168 PSAVARSNSWMGSQGPMSQRRENY---GVPPRRAT 199
P + GP + + GVPP AT
Sbjct: 281 PQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPAT 315
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/56 (41%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENP 58
AD GKLF+GGL+ T ++ L++ F ++G + + +++KD+ T++SRGF F+ F++P
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 63.9 bits (154), Expect = 3e-10
Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 37/215 (17%)
Query: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKD 67
K+F+GG+ E L+ F K G ++EV++I D + RGF FITFE+ A +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSR---GGTRGWLP 124
M+ + GK ++V++A+ P S++++P S GSR GW
Sbjct: 173 MHFHDIMGKKVEVKRAE------------PRDSKSQAPGQPGASQWGSRVVPNAANGWAG 220
Query: 125 S-----QEGHLDDGGYTPDLKMSYSRGLIPVKRGP------------SSRSGGPPPKKSA 167
Q+G+ G + P + G P RG S+ GG PP +
Sbjct: 221 QPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGF 280
Query: 168 PSAVARSNSWMGSQGPMSQRRENY---GVPPRRAT 199
P + GP + + GVPP AT
Sbjct: 281 PQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPAT 315
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/56 (41%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENP 58
AD GKLF+GGL+ T ++ L++ F ++G + + +++KD+ T++SRGF F+ F++P
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 63.5 bits (153), Expect = 4e-10
Identities = 113/414 (27%), Positives = 151/414 (36%), Gaps = 103/414 (24%)
Query: 56 ENPADAKNAAKDMNGKSLHGKAIKVEQAKKP-SFQSGGRRRPPASSRNRSPSGSLRSA-- 112
E D K+ +D + E+ KP S G+ P SSR+ S S S+
Sbjct: 292 EKTRDGKDRGRDFERQR--------EKRDKPRSTSPAGQHHSPISSRHHSSSSQSGSSIQ 343
Query: 113 RGSRGGTRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVA 172
R S R PS SY R L P P RS P P S S
Sbjct: 344 RHSPSPRRKRTPSP---------------SYQRTLTP----PLRRSASPYPSHSLSSP-- 382
Query: 173 RSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATN---DGNHPSCQETR 229
QR+++ PPR + R RHD T+ D H ++TR
Sbjct: 383 -------------QRKQS---PPRHRSPM-----REKGRHDHERTSQSHDRRHERREDTR 421
Query: 230 DYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESY 289
R R+ +D+ SSR +HR RE RD G RRD
Sbjct: 422 --GKRDREKDSREEREYEQDQSSSR---DHRDDREPRD-------------GRDRRDARD 463
Query: 290 SRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDY 349
+R R R SR+ R+ RDY R SR R+ S+R+ DY RD
Sbjct: 464 TRDRRELRDSRDMRD------SREMRDYS---RDTKESRDPRDSRSTRDAHDY----RDR 510
Query: 350 AYRDYGHSSWDEHSSRGYSY-----HDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAP 404
RD H D + SY + R+ S + S S R+ R G S G
Sbjct: 511 EGRD-THRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRN--DRMGRSRGRV 567
Query: 405 PARGPRMSYG--GSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRN 456
P + S G GS ++S + Y SWE+ SS Y +R+ +D R+
Sbjct: 568 PELPEKGSRGSRGSQIDSHS-SNSNYHDSWETRSS-----YPERDRYPERDNRD 615
Score = 36.6 bits (83), Expect = 0.054
Identities = 40/118 (33%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 204 RND-RMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSS 262
RN+ R R+D + G P E SRG S D HSS N+ S
Sbjct: 548 RNESRSEIRNDRMGRSRGRVPELPEKGSRG--SRG--------SQIDSHSSNS--NYHDS 595
Query: 263 RETRDYAPPSRGHAYRDYGHSRRDESYSR--GYRNRRSSRETREYAP--PSRGHGYRD 316
ETR P + RD RD S+ R G R+RR +RE R+ P P R G D
Sbjct: 596 WETRSSYPERDRYPERDNRDQARDSSFERRHGERDRRDNRE-RDQRPSSPIRHQGRND 652
>gi|148612890 serine-arginine repressor protein [Homo sapiens]
Length = 261
Score = 62.0 bits (149), Expect = 1e-09
Identities = 66/259 (25%), Positives = 107/259 (41%), Gaps = 17/259 (6%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDM 68
LFI + T + L+ FG++GPI +V + D T + RGFA++ FE+ DA++A ++
Sbjct: 12 LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71
Query: 69 NGKSLHGKAIKVEQA----KKPSFQSGGRRRP-PASSRNRSPSGSLRSARGSRGGTRGWL 123
N K + G+ I+++ A K P R P S RS S S R R SR + G
Sbjct: 72 NRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTR-SRSSSWGRN 130
Query: 124 PSQEGHLDDGGYTP-DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQG 182
+ L + + S SR +R S+R P + +RS S
Sbjct: 131 RRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKS------ 184
Query: 183 PMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRD 242
+ +R ++ G + + S H ++ + P C+ + Y
Sbjct: 185 -LQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSIARSP-CKSPKGYTNSETKVQTAK 242
Query: 243 NGHSNRDEHSSRGYRNHRS 261
+ H R SR YR+ S
Sbjct: 243 HSHF-RSHSRSRSYRHKNS 260
Score = 29.6 bits (65), Expect = 6.6
Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 18/167 (10%)
Query: 196 RRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRG 255
RR+ S R R +R + N S +E+R R ++Y + SR
Sbjct: 110 RRSRSPSQRRTR--SRSSSWGRNRRRSDSLKESRH-----RRFSY--------SQSKSRS 154
Query: 256 YRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAP--PSRGHG 313
R S R P R R S+ + S+ +SS ++ + SR HG
Sbjct: 155 KSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHG 214
Query: 314 YRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGH-SSW 359
+R +GY N + +T ++ R Y H +SW
Sbjct: 215 RHSDSIARSPCKSPKGYTNSETKVQTAKHSHFRSHSRSRSYRHKNSW 261
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 62.0 bits (149), Expect = 1e-09
Identities = 86/352 (24%), Positives = 127/352 (36%), Gaps = 30/352 (8%)
Query: 151 KRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATIS-SWRNDRMS 209
+ PS R+ P ++S S++ R + + S R+N+ P R+ S S RN
Sbjct: 1558 RHNPSWRNHRSPSERSQRSSLERRHHSPSQRSHCSPSRKNHSSPSERSWRSPSQRNHCSP 1617
Query: 210 TRHDGYATND-GNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDY 268
++ ++ G H Q + RG + R + + H S R+HRSS E R
Sbjct: 1618 PERSCHSLSERGLHSPSQRSH------RGPSQRRHHSPSERSHRSPSERSHRSSSERRHR 1671
Query: 269 APPSRGH---AYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRGH---GYRDYGHSRR 322
+P R H + R + S R+ R E R ++P R H R +
Sbjct: 1672 SPSQRSHRGPSERSHCSPSERRHRSPSQRSHRGPSERRHHSPSKRSHRSPARRSHRSPSE 1731
Query: 323 HESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWDEHSSRGYSYHDGYGEALGRDHS 382
+S R+H S E R ++P R H S E S S + R HS
Sbjct: 1732 RSHHSPSERSHHSPSERRHHSPSER-------SHCSPSERSHCSPSERRHRSPSERRHHS 1784
Query: 383 EHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFH 442
S S+ +R SH +P R R S + H+ R S+ S H
Sbjct: 1785 P--SEKSHHSPSER---SHHSPSER-RRHSPLERSRHSLLERSHRSPSERRSHRSFERSH 1838
Query: 443 --YCDREH-VCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDGGESRSEKG 491
+R H K +P R P R + SS RS G
Sbjct: 1839 RRISERSHSPSEKSHLSPLERSRCSPSERRGHSSSGKTCHSPSERSHRSPSG 1890
Score = 56.6 bits (135), Expect = 5e-08
Identities = 86/329 (26%), Positives = 121/329 (36%), Gaps = 46/329 (13%)
Query: 158 SGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRAT-----ISSWRNDRMSTRH 212
S G P + + +RS SQ +N P R + R RH
Sbjct: 1470 SVGQPLRTVQKDSSSRSKKNFYRNETSSQESKNLSTPGTRVQARGRILPGSPVKRTWHRH 1529
Query: 213 --DGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAP 270
D + NHPS R RG + R + + H S R+ RSS E R ++P
Sbjct: 1530 LKDKLTHKEHNHPSFYRERT----PRGPSERTRHNPSWRNHRSPSERSQRSSLERRHHSP 1585
Query: 271 PSRGHAYRDYGHSRRDESYSRGYRNRRSSRETREYAPPSRG-HGYRDYG-HS-------- 320
R H SR++ S S R+ RS + +PP R H + G HS
Sbjct: 1586 SQRSHC----SPSRKNHS-SPSERSWRSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRG 1640
Query: 321 ---RRHESYSR------GYRNHPSSRETRDYAPPHRDY-AYRDYGHSSWDEHSSRGYSYH 370
RRH S S R+H SS E R +P R + + H S E R S
Sbjct: 1641 PSQRRHHSPSERSHRSPSERSHRSSSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQR 1700
Query: 371 DGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGR 430
G + R HS S S+R +R SH +P R H + R +
Sbjct: 1701 SHRGPSERRHHSP--SKRSHRSPARR---SHRSPSERSHHSP--SERSHHSPSERRHHSP 1753
Query: 431 SWESYSSCGDFHYC---DREHVCRKDQRN 456
S S+ S + +C +R H ++R+
Sbjct: 1754 SERSHCSPSERSHCSPSERRHRSPSERRH 1782
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/117 (41%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 384 HLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDF 441
HL G+ R L T APP SYGGS+ + YS++RD YG S +SYSS D
Sbjct: 88 HLEGN--RCPLVESSTYTRAPP------SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDL 139
Query: 442 HYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
+ R+ V R+++ PPS+ R P PR++Y SSS G G SRS++G SRY
Sbjct: 140 YSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
Score = 30.0 bits (66), Expect = 5.1
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 78 IKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTP 137
+ +E + P +S R P S S S+R GG+R S L G
Sbjct: 87 VHLEGNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG--R 144
Query: 138 DLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQR 187
D RGL PS G PPP+ S S+ + G G S R
Sbjct: 145 DQVGRQERGL-----PPSMERGYPPPRDSYSSSSRGTPRGGGRGGSRSDR 189
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 61.2 bits (147), Expect = 2e-09
Identities = 80/331 (24%), Positives = 118/331 (35%), Gaps = 42/331 (12%)
Query: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLI-KDRTSKSRGFAFITFENPADAKNAAKDM 68
LF+ +N +T E L+ F +GPI + ++ R+ K RG+AFI +E+ D +A K
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 69 NGKSLHGKAIKVEQAKKPSFQS----------GGRRRPPASSRNRSPSGSLRSARGSRGG 118
+GK + G+ + V+ + + + GG RR A R S R G
Sbjct: 165 DGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPG 224
Query: 119 TRGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWM 178
PS H D + SR + SRS + + R S
Sbjct: 225 -----PSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE 279
Query: 179 GSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGY 238
S+ R+ RR++ S R R R + G+ E D APP G
Sbjct: 280 RSKDKDRDRK-------RRSSRSRERARRERERKEELRGGGGDMAEPSEAGD-APPDDGP 331
Query: 239 AYR------DNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSR-RDESYSR 291
D + R+HRS RE R RD R RD + R
Sbjct: 332 PGELGPDGPDGPEEKGRDRDRERRRSHRSERERR-----------RDRDRDRDRDREHKR 380
Query: 292 GYRNRRSSRETREYAPPSRGHGYRDYGHSRR 322
G R R+ + +G G+ R
Sbjct: 381 GERGSERGRDEARGGGGGQDNGLEGLGNDSR 411
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 61.2 bits (147), Expect = 2e-09
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68
K+++G L N+ L+ FG +GP+ V + ++ GFAF+ FE+P DA +A +++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP----GFAFVEFEDPRDAADAVREL 66
Query: 69 NGKSLHGKAIKVE--QAKKPSFQSG----GRRRPPASSRNRSPSGSLRSAR 113
+G++L G ++VE +K S G RRP R RSP RS R
Sbjct: 67 DGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR 117
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 61.2 bits (147), Expect = 2e-09
Identities = 68/273 (24%), Positives = 115/273 (42%), Gaps = 26/273 (9%)
Query: 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAK 62
EAD LF+G L + E++L +F + GP+ +V + KD+ K + FAF+ F++
Sbjct: 7 EADRT--LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 64
Query: 63 NAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRP-------PASSRNRSPSGSLRSARGS 115
A +NG L+G+ IK++ F+SG P P S S +R
Sbjct: 65 YAMNLLNGIKLYGRPIKIQ------FRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYE 118
Query: 116 RGGTRGWLPSQEGHLDDGGYTPD---LKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVA 172
R T + S + +P+ + + L + G + G P +S S
Sbjct: 119 R--TMDNMTSSAQIIQRSFSSPENFQRQAVMNSALRQMSYG--GKFGSSPLDQSGFSPSV 174
Query: 173 RSNSWMGSQGPMSQRRENYGVPPRRATISS--WRNDRMSTRHDGYATNDGNHPSCQETRD 230
+S+S +Q SQ R+ R+ ++S + DR +R Y + +H + D
Sbjct: 175 QSHSHSFNQSSSSQWRQGTPSSQRKVRMNSYPYLADRHYSREQRYTDHGSDHHYRGKRDD 234
Query: 231 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSR 263
+ R + + + NR + S G RSSR
Sbjct: 235 FFYEDRNHDDWSHDYDNRRDSSRDG--KWRSSR 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,876,869
Number of Sequences: 37866
Number of extensions: 1264053
Number of successful extensions: 5477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 275
Number of HSP's that attempted gapping in prelim test: 3711
Number of HSP's gapped (non-prelim): 1206
length of query: 496
length of database: 18,247,518
effective HSP length: 106
effective length of query: 390
effective length of database: 14,233,722
effective search space: 5551151580
effective search space used: 5551151580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.