Guide to the Human Genome
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Name: ATP5J Sequence: fasta or formatted (116aa) NCBI GI: 51479141
Description:

ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 isoform b precursor

Referenced in:

Oxidative Phosphorylation

Other entries for this name:
alt prot [108aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
alt prot [108aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
alt prot [108aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
alt prot [108aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          6           1
 C cysteine            0.9          1           1
 D aspartate           5.2          6           1
 E glutamate           7.8          9           1
 F phenylalanine       8.6         10           1
 G glycine             5.2          6           2
 H histidine           1.7          2           1
 I isoleucine          6.0          7           1
 K lysine              8.6         10           1
 L leucine             6.9          8           1
 M methionine          3.4          4           1
 N asparagine          3.4          4           1
 P proline             4.3          5           1
 Q glutamine           6.0          7           2
 R arginine            6.9          8           2
 S serine              7.8          9           2
 T threonine           3.4          4           1
 V valine              6.9          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP synthase, H+ transporting, mitochondrial F0 comp... 
ATP5J                 0.913   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5J                 0.913   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5J                 0.913   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5J                 0.913   ATP synthase, H+ transporting, mitochondrial F0 comp...
MYH3                  0.048   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH7                  0.039   myosin, heavy chain 7, cardiac muscle, beta 
MYH6                  0.039   myosin heavy chain 6 
MYH8                  0.029   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH1                  0.029   myosin, heavy chain 1, skeletal muscle, adult [Homo...
ATL3                  0.029   atlastin 3 
MYH4                  0.029   myosin, heavy polypeptide 4, skeletal muscle 
PRIM2                 0.024   DNA primase polypeptide 2 
MYH2                  0.024   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.024   myosin, heavy chain 2, skeletal muscle, adult [Homo...
NFYB                  0.019   nuclear transcription factor Y, beta 
MYH13                 0.019   myosin, heavy polypeptide 13, skeletal muscle [Homo...
PRKCD                 0.014   protein kinase C, delta 
PRKCD                 0.014   protein kinase C, delta 
MRPL40                0.014   mitochondrial ribosomal protein L40 
MYH15                 0.010   myosin, heavy polypeptide 15 
DAAM1                 0.010   dishevelled-associated activator of morphogenesis 1 ...
ALCAM                 0.010   activated leukocyte cell adhesion molecule 
ABCC6                 0.005   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.005   PREDICTED: hypothetical protein 
WNK3                  0.005   WNK lysine deficient protein kinase 3 isoform 1 [Hom...
WNK3                  0.005   WNK lysine deficient protein kinase 3 isoform 2 [Hom...
SPARC                 0.005   secreted protein, acidic, cysteine-rich 
SAP130                0.005   Sin3A-associated protein, 130kDa isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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