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Search of human proteins with 51477708
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
(287 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 581 e-166
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 569 e-163
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 556 e-158
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 544 e-155
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 348 3e-96
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 330 1e-90
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 321 5e-88
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 182 3e-46
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 175 4e-44
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 175 4e-44
gi|20373175 musashi 2 isoform a [Homo sapiens] 175 5e-44
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 173 1e-43
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 172 3e-43
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 170 2e-42
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 170 2e-42
gi|25121993 musashi 2 isoform b [Homo sapiens] 165 5e-41
gi|4505255 musashi 1 [Homo sapiens] 162 4e-40
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 152 4e-37
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 152 4e-37
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 151 6e-37
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 140 1e-33
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 140 1e-33
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 136 2e-32
gi|6678271 TAR DNA binding protein [Homo sapiens] 112 3e-25
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 81 9e-16
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 81 9e-16
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 81 9e-16
gi|55956788 nucleolin [Homo sapiens] 77 2e-14
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 74 1e-13
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 74 1e-13
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 581 bits (1497), Expect = e-166
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG
Sbjct: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
Query: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR
Sbjct: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
Query: 241 KEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSYKPY 287
KEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSYKPY
Sbjct: 241 KEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSYKPY 287
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 569 bits (1467), Expect = e-163
Identities = 287/306 (93%), Positives = 287/306 (93%), Gaps = 19/306 (6%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ 281
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQ 300
Query: 282 NSYKPY 287
NSYKPY
Sbjct: 301 NSYKPY 306
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 556 bits (1432), Expect = e-158
Identities = 286/336 (85%), Positives = 287/336 (85%), Gaps = 49/336 (14%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG
Sbjct: 61 AESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 120
Query: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR
Sbjct: 121 FGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIR 180
Query: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS
Sbjct: 181 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 240
Query: 241 KEQYQQQQQWGSRGGFAGRARGRGG----------------------------------- 265
KEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 241 KEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGYD 300
Query: 266 --------------DQQSGYGKVSRRGGHQNSYKPY 287
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 301 YTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 336
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 544 bits (1402), Expect = e-155
Identities = 286/355 (80%), Positives = 287/355 (80%), Gaps = 68/355 (19%)
Query: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS
Sbjct: 1 MSEEQFGGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGS 60
Query: 61 AESEGAKIDASKNEEDEG-------------------KMFIGGLSWDTTKKDLKDYFSKF 101
AESEGAKIDASKNEEDEG KMFIGGLSWDTTKKDLKDYFSKF
Sbjct: 61 AESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKF 120
Query: 102 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 161
GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP
Sbjct: 121 GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP 180
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM
Sbjct: 181 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 240
Query: 222 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG---------------- 265
EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG
Sbjct: 241 EKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQ 300
Query: 266 ---------------------------------DQQSGYGKVSRRGGHQNSYKPY 287
+QQSGYGKVSRRGGHQNSYKPY
Sbjct: 301 GYGNYGYNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 348 bits (893), Expect = 3e-96
Identities = 179/277 (64%), Positives = 213/277 (76%), Gaps = 14/277 (5%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
Query: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
Query: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE Y QQQQ+GS GG R
Sbjct: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGS-GGRGNR 248
Query: 260 ARGR---------GGDQQSGYGKVSRRGGHQNSYKPY 287
RG GG + YGK RRGGHQN+YKPY
Sbjct: 249 NRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKPY 285
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 330 bits (845), Expect = 1e-90
Identities = 180/323 (55%), Positives = 213/323 (65%), Gaps = 59/323 (18%)
Query: 22 SAGEQEGAMVAATQGAA-AAAGSGAGTGGGTASGGTEGGSAE-SEGAKIDASKNEEDEGK 79
+ G E A +G + A AG+GA G G A+ G+ +EG +I+ASKNEED GK
Sbjct: 12 TTGATENGHEAVPEGESPAGAGTGAAAGAGGATAAPPSGNQNGAEGDQINASKNEEDAGK 71
Query: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
MF+GGLSWDT+KKDLKDYF+KFGEVVDCT+K+DP TGRSRGFGF+LFK++ SV+KV+DQK
Sbjct: 72 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 131
Query: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
EH+L+G+VIDPK+A AMK K+PVKKIFVGGL+P+ EEKIREYFG FGE+E+IELPMD K
Sbjct: 132 EHRLDGRVIDPKKAMAMK-KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPK 190
Query: 200 TNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG----- 254
NKRRGF FITFKEEEPVKK++EKK+H V SKCEIKVA KE Y QQQQ+GS G
Sbjct: 191 LNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVY-QQQQYGSGGRGNRN 249
Query: 255 -GFAGRARGRGGDQQS-------------------------------------------- 269
G G G GG QS
Sbjct: 250 RGNRGSGGGGGGGGQSQSWNQGYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDY 309
Query: 270 -----GYGKVSRRGGHQNSYKPY 287
YGK RRGGHQN+YKPY
Sbjct: 310 SQGSTNYGKSQRRGGHQNNYKPY 332
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 321 bits (822), Expect = 5e-88
Identities = 165/288 (57%), Positives = 199/288 (69%), Gaps = 63/288 (21%)
Query: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
+EG+KI+ASKN++D+GKMFIGGLSWDT+KKDL +Y S+FGEVVDCT+K DP+TGRSRGFG
Sbjct: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
Query: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 182
FVLFK++ SVDKV++ KEHKL+GK+IDPKRAKA+K KEP KK+FVGGLSPDT EE+I+EY
Sbjct: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
Query: 183 FGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
FG FGE+E+IELPMD KTN+RRGFCFIT+ +EEPVKK++E +YH +G KCEIKVA KE
Sbjct: 253 FGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKE 312
Query: 243 QYQQQQQW---------GSRGGFAGRARGR-----------------------GGD---- 266
Y+QQQQ G RGG GR RG+ GGD
Sbjct: 313 VYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYS 372
Query: 267 --------------------------QQSGYGKVSRRGG-HQNSYKPY 287
QQS YGK SR GG HQN+Y+PY
Sbjct: 373 GYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY 420
Score = 61.6 bits (148), Expect = 8e-10
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
D E+ + + + A K ++ K+F+GGLS DT ++ + EY FGEV +
Sbjct: 122 DMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 181
Query: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 228
D T + RGF F+ FK+ V K++E K H +
Sbjct: 182 DPVTGRSRGFGFVLFKDAASVDKVLELKEHKL 213
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 182 bits (462), Expect = 3e-46
Identities = 91/213 (42%), Positives = 132/213 (61%), Gaps = 6/213 (2%)
Query: 72 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131
K E K+FIGGLS++TT L+++F K+G + DC + DP T RSRGFGFV + E
Sbjct: 29 KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 88
Query: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185
VD M + HK++G+V++PKRA + + VKKIFVGG+ DT E +R+YF
Sbjct: 89 VDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
Query: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245
+G++E+IE+ D ++ K+RGF F+TF + + V KI+ +KYH + CE+K A+SK++ Q
Sbjct: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQ 208
Query: 246 QQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRG 278
RGG +G GRGG+ G G R G
Sbjct: 209 SAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGG 241
Score = 28.9 bits (63), Expect = 5.4
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 7 GGDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGG 59
GG+ G +G+Q+ G+ SG+ GGG SGG GG
Sbjct: 320 GGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 175 bits (444), Expect = 4e-44
Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 12/230 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283
SK++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
Score = 30.4 bits (67), Expect = 1.9
Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 6 FGGDGA-AAAATAAVGGSAGEQEGAMVAATQGAAAAA---------GSGAGTGGGTASGG 55
FG DG GGS G G QG+ G G G GGG+ S
Sbjct: 247 FGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNF 306
Query: 56 TEGGSAESEGAKIDASKN 73
GGS G + S N
Sbjct: 307 GGGGSYNDFGNYNNQSSN 324
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 175 bits (444), Expect = 4e-44
Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 12/230 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181
Query: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283
SK++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGS 231
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 175 bits (443), Expect = 5e-44
Identities = 95/204 (46%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 63 SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
S+G A+ ++ D GKMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFG
Sbjct: 6 SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
Query: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEK 178
FV F + SVDKV+ Q H+L+ K IDPK R K KKIFVGGLS +T E
Sbjct: 66 FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
Query: 179 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 238
+++YF FG+VE L D TN+ RGF F+TF+ E+ V+K+ E +H + E K A
Sbjct: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
Query: 239 MSKEQYQQQQQWGSRGGFAGRARG 262
KE G GRARG
Sbjct: 186 QPKEVMFPP-------GTRGRARG 202
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 173 bits (439), Expect = 1e-43
Identities = 87/229 (37%), Positives = 140/229 (61%), Gaps = 8/229 (3%)
Query: 64 EGAKIDASKNEEDE-GKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
E ++ K E+++ K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFG
Sbjct: 6 ETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFG 65
Query: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPE 176
FV F VD M + H ++G+V++PKRA A + VKK+FVGG+ DT E
Sbjct: 66 FVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEE 125
Query: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
+R+YF +G++++IE+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 185
Query: 237 VAMSKEQYQQ-QQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSY 284
A+S+++ Q+ Q RGG G RGG G G S G + Y
Sbjct: 186 KALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 234
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 172 bits (436), Expect = 3e-43
Identities = 85/220 (38%), Positives = 135/220 (61%), Gaps = 7/220 (3%)
Query: 72 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESES 131
+ +E K+FIGGLS++TT++ L++Y+ ++G++ DC + DP + RSRGFGFV F
Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
Query: 132 VDKVMDQKEHKLNGKVIDPKRAKAMKTKEP------VKKIFVGGLSPDTPEEKIREYFGG 185
VD M + H ++G+V++PKRA A + VKK+FVGG+ DT E +R+YF
Sbjct: 63 VDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEE 122
Query: 186 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQ 245
+G++++IE+ D ++ K+RGF F+TF + +PV KI+ +KYH + E++ A+S+++ Q
Sbjct: 123 YGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQ 182
Query: 246 Q-QQQWGSRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSY 284
+ Q RGG G RGG G G S G + Y
Sbjct: 183 EVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGY 222
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 170 bits (430), Expect = 2e-42
Identities = 92/230 (40%), Positives = 136/230 (59%), Gaps = 12/230 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K + K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283
K++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 170 bits (430), Expect = 2e-42
Identities = 92/230 (40%), Positives = 136/230 (59%), Gaps = 12/230 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K + K E K+FIGGLS++TT + L+ +F ++G + DC + DP T RSRGFGFV
Sbjct: 2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ HK++G+V++PKRA + + + VKKIFVGG+ DT E +
Sbjct: 62 YATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+YF +G++E IE+ D + K+RGF F+TF + + V KI+ +KYH V CE++ A+
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKAL 181
Query: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNS 283
K++ Q+ + GS GR G GG+ G G S RGG S
Sbjct: 182 PKQEMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGS 231
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 165 bits (417), Expect = 5e-41
Identities = 90/188 (47%), Positives = 112/188 (59%), Gaps = 11/188 (5%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
KMFIGGLSW T+ L+DYFSKFGE+ +C + DP T RSRGFGFV F + SVDKV+ Q
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 139 KEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIEL 194
H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+VE L
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137
Query: 195 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRG 254
D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP------- 190
Query: 255 GFAGRARG 262
G GRARG
Sbjct: 191 GTRGRARG 198
Score = 61.2 bits (147), Expect = 1e-09
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 161 PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 220
P K+F+GGLS T + +R+YF FGE+ + D T + RGF F+TF + V K+
Sbjct: 15 PSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 74
Query: 221 MEKKYHNVGLSKCEIKVAMSK 241
+ + +H + + KVA +
Sbjct: 75 LGQPHHELDSKTIDPKVAFPR 95
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 162 bits (409), Expect = 4e-40
Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 4/171 (2%)
Query: 76 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135
D KMFIGGLSW TT++ L++YF +FGEV +C + DP+T RSRGFGFV F + VDKV
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 136 MDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 191
+ Q H+L+ K IDPK R K KKIFVGGLS +T E +++YF FG+V+
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 137
Query: 192 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKE 242
L D TN+ RGF F+TF+ E+ V+K+ E +H + E K A KE
Sbjct: 138 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
Score = 79.0 bits (193), Expect = 5e-15
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
K+F+GGLS +TT +D+K YF +FG+V D L D T R RGFGFV F+ + V+KV +
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 139 KEHKLNGKVIDPKRAKAMKTKEP 161
H++N K+++ K+A+ + P
Sbjct: 170 HFHEINNKMVECKKAQPKEVMSP 192
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 152 bits (383), Expect = 4e-37
Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 12/231 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNSY 284
SK++ Q+ + GS GR G G+ G+ G S GG S+
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSH 232
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 152 bits (383), Expect = 4e-37
Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 12/231 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGY-GKVSRRGGHQNSY 284
SK++ Q+ + GS GR G G+ G+ G S GG S+
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSH 232
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 151 bits (382), Expect = 6e-37
Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 11/218 (5%)
Query: 66 AKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 125
+K ++ K + K+FIGGL ++T+ + L+ + ++G + +C + DP T RSRGFGFV
Sbjct: 2 SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61
Query: 126 FKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKI 179
+ E VD M+ + HK+ G+V++PK A + + + VKKIFVGG+ DT E +
Sbjct: 62 YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121
Query: 180 REYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAM 239
R+Y+ +G+ E IE+ D + K+R F F+TF + KI+ +KYH V CE++ A+
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181
Query: 240 SKEQY-----QQQQQWGSRGGFAGRARGRGGDQQSGYG 272
SK++ Q+ + GS GR G G+ G+G
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHG 219
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 140 bits (354), Expect = 1e-33
Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 33/228 (14%)
Query: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
++ GK+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176
V+ + H L+G+ IDPK R K K P KIFVGG+ + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
++REYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 237 VAMSKEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 272
A ++ Q QWGSR G+AG+ Q GYG
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
Score = 68.2 bits (165), Expect = 8e-12
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 64 EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
+G + D SK+ K+F+GG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159
+ F++ +SVD+ ++ H + GK ++ KRA+ +K
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 140 bits (354), Expect = 1e-33
Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 33/228 (14%)
Query: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
++ GK+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176
V+ + H L+G+ IDPK R K K P KIFVGG+ + E
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
Query: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
++REYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 237 VAMSKEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 272
A ++ Q QWGSR G+AG+ Q GYG
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
Score = 68.2 bits (165), Expect = 8e-12
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 64 EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
+G + D SK+ K+F+GG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
Query: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159
+ F++ +SVD+ ++ H + GK ++ KRA+ +K
Sbjct: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 136 bits (343), Expect = 2e-32
Identities = 82/219 (37%), Positives = 115/219 (52%), Gaps = 13/219 (5%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
K+FIGGL+ T++ L+ +F FG + DC + ++P T RSR FGFV + E D M
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 139 KEHKLNGKVIDPKRAKAMKTKE------PVKKIFVGGLSPDTPEEKIREYFGGFGEVESI 192
H ++G ++ KRA + + VKK+FVGGL D E + E+F FG VE
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127
Query: 193 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWG- 251
E+ D ++ K+RGF F+ F+ + K K+H + + E+K A+ KE G
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187
Query: 252 ---SRGGFAGRARGRGGDQQSGYGKVSRRGGHQNSYKPY 287
SRGG GR RG GG Q+G K GG NSY Y
Sbjct: 188 SRSSRGGRGGRGRG-GGRDQNGLSKGG--GGGYNSYGGY 223
Score = 28.9 bits (63), Expect = 5.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 7 GGDGAAAAATAAVGG----SAGEQEGAMVAATQGAAAAAGSGAGTGGG-TASGGTEGGSA 61
GG G + ++ GG +Q G G + G G G GGG A GG GGS+
Sbjct: 183 GGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSS 242
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 112 bits (281), Expect = 3e-25
Identities = 73/213 (34%), Positives = 118/213 (55%), Gaps = 16/213 (7%)
Query: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
+ + GL W TT++DLK+YFS FGEV+ +K D TG S+GFGFV F E E+ KVM Q+
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 140 EHKLNGKVIDPKRAKAMKTK-EPV--KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196
H ++G+ D K + +++ EP+ +K+FVG + D E+++RE+F +G+V + +P
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP- 223
Query: 197 DNKTNKRRGFCFITFKEEEPVKKIMEK----KYHNVGLSKCEIKVAMSKEQYQQQQQWGS 252
R F F+TF +++ + + + K +V +S E K +++ + + G+
Sbjct: 224 ----KPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGN 279
Query: 253 RGGF---AGRARGRGGDQQSGYGKVSRRGGHQN 282
GGF G RGG G + S GG N
Sbjct: 280 PGGFGNQGGFGNSRGGGAGLGNNQGSNMGGGMN 312
Score = 60.8 bits (146), Expect = 1e-09
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 146 KVIDPKRAKAMKTKEPVKK---IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 202
K+ + + A+K K V+K + V GL T E+ ++EYF FGEV +++ D KT
Sbjct: 84 KMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 143
Query: 203 RRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 259
+GF F+ F E E K+M ++ H + C+ K+ SK+ Q + SR F GR
Sbjct: 144 SKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQ--SQDEPLRSRKVFVGR 197
Score = 38.5 bits (88), Expect = 0.007
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 67 KIDASKNEEDEG----KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122
K+ SK +DE K+F+G + D T+ +L+++FS++G+V+D I R F
Sbjct: 176 KLPNSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVF-----IPKPFRAFA 230
Query: 123 FVLFKESE 130
FV F + +
Sbjct: 231 FVTFADDQ 238
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 81.3 bits (199), Expect = 9e-16
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 56 TEGGSAESEGAKIDASKNEEDEGK-------MFIGGLSWDTTKKDLKDYFSKFGEVVDCT 108
TE G A++ AK++ + EE+E + +FI L++DTT++ LK+ FSK G V C+
Sbjct: 702 TEEG-ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCS 760
Query: 109 L---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------IDPK 151
+ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 761 ISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLA 820
Query: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFIT 210
R K + K+ KI V + +IRE F FGE++++ LP T RGF F+
Sbjct: 821 RKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVD 880
Query: 211 FKEEEPVKKIMEKKYHNVGL 230
F ++ K+ H+ L
Sbjct: 881 FLTKQDAKRAFNALCHSTHL 900
Score = 54.3 bits (129), Expect = 1e-07
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 29/224 (12%)
Query: 21 GSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKM 80
GS E+E + +AT GAG G +G A +E K K +
Sbjct: 239 GSEAEEEDS--SATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTV 296
Query: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
+ G ++ T+K++ ++ + V ++ G G+ FV F E V + +
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 141 HKLNGKVIDPKRAKAMKTKEPVKK-------------------------IFVGGLSPDTP 175
+ G+ I+ R K + T + K +FV L +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 176 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 219
EE + + F +G + + P+D+ T K +GF FITF E K
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 48.5 bits (114), Expect = 7e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 51 TASGGTEGGSAESEGAKIDASKNEED---EGKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 107
T G + + +G + ++ EED G++F+ L + +T++DL+ FSK+G + +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 108 TLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
+D +T + +GF F+ F E K +
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Score = 35.0 bits (79), Expect = 0.076
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 139 KEHKLNGKVIDPKR 152
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.099
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 222 EKKYHNVGLSKCEIKVAMSK 241
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 81.3 bits (199), Expect = 9e-16
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 56 TEGGSAESEGAKIDASKNEEDEGK-------MFIGGLSWDTTKKDLKDYFSKFGEVVDCT 108
TE G A++ AK++ + EE+E + +FI L++DTT++ LK+ FSK G V C+
Sbjct: 702 TEEG-ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCS 760
Query: 109 L---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------IDPK 151
+ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 761 ISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLA 820
Query: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFIT 210
R K + K+ KI V + +IRE F FGE++++ LP T RGF F+
Sbjct: 821 RKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVD 880
Query: 211 FKEEEPVKKIMEKKYHNVGL 230
F ++ K+ H+ L
Sbjct: 881 FLTKQDAKRAFNALCHSTHL 900
Score = 54.3 bits (129), Expect = 1e-07
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 29/224 (12%)
Query: 21 GSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKM 80
GS E+E + +AT GAG G +G A +E K K +
Sbjct: 239 GSEAEEEDS--SATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTV 296
Query: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
+ G ++ T+K++ ++ + V ++ G G+ FV F E V + +
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 141 HKLNGKVIDPKRAKAMKTKEPVKK-------------------------IFVGGLSPDTP 175
+ G+ I+ R K + T + K +FV L +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 176 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 219
EE + + F +G + + P+D+ T K +GF FITF E K
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 48.5 bits (114), Expect = 7e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 51 TASGGTEGGSAESEGAKIDASKNEED---EGKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 107
T G + + +G + ++ EED G++F+ L + +T++DL+ FSK+G + +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 108 TLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
+D +T + +GF F+ F E K +
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Score = 35.0 bits (79), Expect = 0.076
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 139 KEHKLNGKVIDPKR 152
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.099
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 222 EKKYHNVGLSKCEIKVAMSK 241
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 81.3 bits (199), Expect = 9e-16
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 56 TEGGSAESEGAKIDASKNEEDEGK-------MFIGGLSWDTTKKDLKDYFSKFGEVVDCT 108
TE G A++ AK++ + EE+E + +FI L++DTT++ LK+ FSK G V C+
Sbjct: 702 TEEG-ADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCS 760
Query: 109 L---KLDPITGRSRGFGFVLFKESESVDKVMDQKE------HKLNGKV--------IDPK 151
+ K S GFGFV +++ E K + Q + HKL ++ +
Sbjct: 761 ISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLA 820
Query: 152 RAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD-NKTNKRRGFCFIT 210
R K + K+ KI V + +IRE F FGE++++ LP T RGF F+
Sbjct: 821 RKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVD 880
Query: 211 FKEEEPVKKIMEKKYHNVGL 230
F ++ K+ H+ L
Sbjct: 881 FLTKQDAKRAFNALCHSTHL 900
Score = 54.3 bits (129), Expect = 1e-07
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 29/224 (12%)
Query: 21 GSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKNEEDEGKM 80
GS E+E + +AT GAG G +G A +E K K +
Sbjct: 239 GSEAEEEDS--SATPVLQERDSKGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHTV 296
Query: 81 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 140
+ G ++ T+K++ ++ + V ++ G G+ FV F E V + +
Sbjct: 297 KLRGAPFNVTEKNVMEFLAPLKPVAIRIVR--NAHGNKTGYIFVDFSNEEEVKQALKCNR 354
Query: 141 HKLNGKVIDPKRAKAMKTKEPVKK-------------------------IFVGGLSPDTP 175
+ G+ I+ R K + T + K +FV L +
Sbjct: 355 EYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTST 414
Query: 176 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 219
EE + + F +G + + P+D+ T K +GF FITF E K
Sbjct: 415 EEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458
Score = 48.5 bits (114), Expect = 7e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 51 TASGGTEGGSAESEGAKIDASKNEED---EGKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 107
T G + + +G + ++ EED G++F+ L + +T++DL+ FSK+G + +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 108 TLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
+D +T + +GF F+ F E K +
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFPEHAVKAYSE 462
Score = 35.0 bits (79), Expect = 0.076
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
++ + L ++ + F+ FG + DC+LK G+ R FGF+ FK E K
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTK-DGKFRKFGFIGFKSEEEAQKA--- 58
Query: 139 KEHKLNGKVIDPKR 152
+ N ID R
Sbjct: 59 -QKHFNKSFIDTSR 71
Score = 34.7 bits (78), Expect = 0.099
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 162 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ ++ V L EE+ R+ F FG + L K K R F FI FK EE +K
Sbjct: 1 MSRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKF-TKDGKFRKFGFIGFKSEEEAQK-A 58
Query: 222 EKKYHNVGLSKCEIKVAMSK 241
+K ++ + I V K
Sbjct: 59 QKHFNKSFIDTSRITVEFCK 78
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 76.6 bits (187), Expect = 2e-14
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 21/232 (9%)
Query: 55 GTEGGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 114
G +G + + G K E + + LS+ T++ L++ F K T P
Sbjct: 465 GEKGQNQDYRGGKNSTWSGESKT--LVLSNLSYSATEETLQEVFEK------ATFIKVPQ 516
Query: 115 T--GRSRGFGFVLFKESESVDKVMDQ-KEHKLNGKVI----DPKRAKAMKTKEPVKKIFV 167
G+S+G+ F+ F E + ++ + ++ G+ I R +P K +FV
Sbjct: 517 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFV 576
Query: 168 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYH 226
GLS DT EE ++E F G + D +T +GF F+ F EE K E +
Sbjct: 577 KGLSEDTTEETLKESFDGSVRARIV---TDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 633
Query: 227 NVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSGYGKVSRRG 278
+ +K + A K + + G RGGF GR GRGG + G+G R G
Sbjct: 634 EIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGG--RGGFGGRGRGG 683
Score = 49.3 bits (116), Expect = 4e-06
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 58 GGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 117
G + E K SK E D + L + T+ +LK+ F E+ +L G+
Sbjct: 373 GNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEI-----RLVSKDGK 427
Query: 118 SRGFGFVLFKESESVDKVMDQKE-HKLNGKVI------------DPKRAKAMKTKEPVKK 164
S+G ++ FK +K ++K+ +++G+ I D + K K
Sbjct: 428 SKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKT 487
Query: 165 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM 221
+ + LS EE ++E F + I++P N+ K +G+ FI F E K+ +
Sbjct: 488 LVLSNLSYSATEETLQEV---FEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEAL 540
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 73.9 bits (180), Expect = 1e-13
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 74 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
E D +F L+ +DL+++FS G+V D + D + RS+G +V F + SV
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 134 KVMDQKEHKLNGKVI-------DPKRAKAM-----KTKEPVKKIFVGGLSPDTPEEKIRE 181
+ ++ G I + RA AM K +++VG L + E+ +R
Sbjct: 209 LAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRG 268
Query: 182 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
F FG +ESI+L MD++T + +G+ FITF + E KK +E+
Sbjct: 269 IFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 73.9 bits (180), Expect = 1e-13
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 74 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
E D +F L+ +DL+++FS G+V D + D + RS+G +V F + SV
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 134 KVMDQKEHKLNGKVI-------DPKRAKAM-----KTKEPVKKIFVGGLSPDTPEEKIRE 181
+ ++ G I + RA AM K +++VG L + E+ +R
Sbjct: 209 LAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRG 268
Query: 182 YFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223
F FG +ESI+L MD++T + +G+ FITF + E KK +E+
Sbjct: 269 IFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,602,507
Number of Sequences: 37866
Number of extensions: 581832
Number of successful extensions: 11290
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 267
Number of HSP's that attempted gapping in prelim test: 5233
Number of HSP's gapped (non-prelim): 3872
length of query: 287
length of database: 18,247,518
effective HSP length: 101
effective length of query: 186
effective length of database: 14,423,052
effective search space: 2682687672
effective search space used: 2682687672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.