Guide to the Human Genome
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Name: ATP8B4 Sequence: fasta or formatted (1192aa) NCBI GI: 50083277
Description:

ATPase class I type 8B member 4

Referenced in:

Amphipath-transporting ATPase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         70           2
 C cysteine            1.8         22           2
 D aspartate           4.9         59           2
 E glutamate           6.0         71           2
 F phenylalanine       6.4         76           2
 G glycine             5.5         65           1
 H histidine           2.3         27           2
 I isoleucine          7.2         86           3
 K lysine              5.8         69           2
 L leucine            10.3        123           4
 M methionine          2.1         25           1
 N asparagine          5.4         64           2
 P proline             2.4         29           3
 Q glutamine           4.1         49           2
 R arginine            4.6         55           2
 S serine              7.0         84           3
 T threonine           6.3         75           3
 V valine              7.0         84           2
 W tryptophan          1.6         19           1
 Y tyrosine            3.4         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase class I type 8B member 4 
ATP8B2                0.721   ATPase, class I, type 8B, member 2 isoform a 
ATP8B1                0.520   ATPase, class I, type 8B, member 1 
ATP8B3                0.379   ATPase, class I, type 8B, member 3 
ATP8A1                0.346   ATPase, aminophospholipid transporter (APLT), class ...
ATP8A1                0.344   ATPase, aminophospholipid transporter (APLT), class...
ATP8A2                0.341   ATPase, aminophospholipid transporter-like, Class I...
ATP11B                0.268   ATPase, class VI, type 11B 
ATP11A                0.259   ATPase, class VI, type 11A isoform b 
ATP11A                0.258   ATPase, class VI, type 11A isoform a 
ATP11C                0.257   ATPase, class VI, type 11C isoform b 
ATP11C                0.256   ATPase, class VI, type 11C isoform a 
ATP8B2                0.224   ATPase, class I, type 8B, member 2 isoform b 
ATP9B                 0.169   ATPase, class II, type 9B 
ATP10A                0.169   ATPase, class V, type 10A 
ATP10B                0.169   ATPase, class V, type 10B 
ATP10D                0.167   ATPase, class V, type 10D 
ATP9A                 0.167   ATPase, class II, type 9A 
ATP13A4               0.028   ATPase type 13A4 
ATP13A3               0.024   ATPase type 13A3 
ATP2B4                0.022   plasma membrane calcium ATPase 4 isoform 4a 
ATP2B4                0.022   plasma membrane calcium ATPase 4 isoform 4b 
ATP2B3                0.020   plasma membrane calcium ATPase 3 isoform 3b 
ATP2B3                0.020   plasma membrane calcium ATPase 3 isoform 3a 
ATP13A5               0.020   ATPase type 13A5 
ATP2B1                0.017   plasma membrane calcium ATPase 1 isoform 1a 
ATP2B1                0.017   plasma membrane calcium ATPase 1 isoform 1b 
ATP2B2                0.017   plasma membrane calcium ATPase 2 isoform 2 
ATP2B2                0.017   plasma membrane calcium ATPase 2 isoform 1 
ATP2A2                0.015   ATPase, Ca++ transporting, slow twitch 2 isoform 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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