Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATP2B2 Sequence: fasta or formatted (1243aa) NCBI GI: 48255951
Description:

plasma membrane calcium ATPase 2 isoform 1

Referenced in:

Sodium, Potassium, and Calcium Membrane ATPases

Other entries for this name:
alt prot [1198aa] plasma membrane calcium ATPase 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         90           3
 C cysteine            1.7         21           2
 D aspartate           5.6         69           2
 E glutamate           7.2         90           4
 F phenylalanine       3.8         47           2
 G glycine             7.4         92           2
 H histidine           1.4         18           1
 I isoleucine          7.5         93           2
 K lysine              6.8         85           2
 L leucine             8.5        106           3
 M methionine          2.7         34           2
 N asparagine          4.1         51           2
 P proline             4.8         60           2
 Q glutamine           4.1         51           2
 R arginine            4.4         55           2
 S serine              6.3         78           3
 T threonine           6.0         75           2
 V valine              7.6         95           2
 W tryptophan          1.0         12           1
 Y tyrosine            1.7         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plasma membrane calcium ATPase 2 isoform 1 
ATP2B2                0.957   plasma membrane calcium ATPase 2 isoform 2 
ATP2B3                0.815   plasma membrane calcium ATPase 3 isoform 3b 
ATP2B1                0.802   plasma membrane calcium ATPase 1 isoform 1b 
ATP2B3                0.765   plasma membrane calcium ATPase 3 isoform 3a 
ATP2B1                0.737   plasma membrane calcium ATPase 1 isoform 1a 
ATP2B4                0.716   plasma membrane calcium ATPase 4 isoform 4b 
ATP2B4                0.693   plasma membrane calcium ATPase 4 isoform 4a 
ATP2C1                0.098   calcium-transporting ATPase 2C1 isoform 1b 
ATP2C1                0.098   calcium-transporting ATPase 2C1 isoform 1d 
ATP2C1                0.098   calcium-transporting ATPase 2C1 isoform 1a 
ATP2C1                0.096   calcium-transporting ATPase 2C1 isoform 1c 
ATP2C2                0.095   ATPase, Ca++ transporting, type 2C, member 2 
ATP2A2                0.092   ATPase, Ca++ transporting, slow twitch 2 isoform 2 [H...
ATP2A2                0.092   ATPase, Ca++ transporting, slow twitch 2 isoform 1 [...
ATP12A                0.091   hydrogen/potassium-exchanging ATPase 12A 
ATP2A3                0.090   ATPase, Ca++ transporting, ubiquitous isoform a [Hom...
ATP2A3                0.090   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.090   ATPase, Ca++ transporting, ubiquitous isoform f [Hom...
ATP2A3                0.090   ATPase, Ca++ transporting, ubiquitous isoform c [Hom...
ATP2A3                0.090   ATPase, Ca++ transporting, ubiquitous isoform b [Hom...
ATP2A3                0.090   ATPase, Ca++ transporting, ubiquitous isoform d [Hom...
ATP2A3                0.090   ATPase, Ca++ transporting, ubiquitous isoform e [Hom...
ATP2A2                0.088   ATPase, Ca++ transporting, slow twitch 2 isoform 3 ...
ATP2A1                0.087   ATPase, Ca++ transporting, fast twitch 1 isoform b [...
ATP2A1                0.087   ATPase, Ca++ transporting, fast twitch 1 isoform a [...
ATP1A1                0.084   Na+/K+ -ATPase alpha 1 subunit isoform c 
ATP1A1                0.084   Na+/K+ -ATPase alpha 1 subunit isoform d 
ATP1A1                0.084   Na+/K+ -ATPase alpha 1 subunit isoform a 
ATP1A4                0.083   Na+/K+ -ATPase alpha 4 subunit isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press