Guide to the Human Genome
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Name: OR2A42 Sequence: fasta or formatted (304aa) NCBI GI: 49227244
Description:

olfactory receptor, family 2, subfamily A, member 42

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         21           2
 C cysteine            3.6         11           1
 D aspartate           1.3          4           1
 E glutamate           3.0          9           2
 F phenylalanine       8.2         25           2
 G glycine             5.9         18           1
 H histidine           3.9         12           1
 I isoleucine          6.2         19           2
 K lysine              2.0          6           1
 L leucine            16.8         51           3
 M methionine          3.0          9           1
 N asparagine          2.6          8           1
 P proline             4.6         14           2
 Q glutamine           2.3          7           2
 R arginine            4.9         15           2
 S serine              8.6         26           2
 T threonine           4.6         14           1
 V valine              7.2         22           2
 W tryptophan          1.0          3           1
 Y tyrosine            3.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 2, subfamily A, member 42... 
OR2A1                 1.000   olfactory receptor, family 2, subfamily A, member 1 ...
OR2A5                 0.784   olfactory receptor, family 2, subfamily A, member 5 ...
OR2A14                0.724   olfactory receptor, family 2, subfamily A, member 14...
OR2A25                0.721   olfactory receptor, family 2, subfamily A, member 25...
OR2A12                0.689   olfactory receptor, family 2, subfamily A, member 12...
OR2A7                 0.689   olfactory receptor, family 2, subfamily A, member 7 ...
OR2A2                 0.682   olfactory receptor, family 2, subfamily A, member 2...
OR2A4                 0.680   olfactory receptor, family 2, subfamily A, member 4 ...
OR2D3                 0.466   olfactory receptor, family 2, subfamily D, member 3 ...
OR2G3                 0.459   olfactory receptor, family 2, subfamily G, member 3 ...
OR10C1                0.454   olfactory receptor, family 10, subfamily C, member 1...
OR2G6                 0.451   olfactory receptor, family 2, subfamily G, member 6 ...
OR2B2                 0.451   olfactory receptor, family 2, subfamily B, member 2 ...
OR2C3                 0.451   olfactory receptor, family 2, subfamily C, member 3...
OR2D2                 0.449   olfactory receptor, family 2, subfamily D, member 2 ...
OR2T33                0.447   olfactory receptor, family 2, subfamily T, member 33...
OR2H2                 0.447   olfactory receptor, family 2, subfamily H, member 2 ...
OR2C1                 0.447   olfactory receptor, family 2, subfamily C, member 1...
OR2T1                 0.446   olfactory receptor, family 2, subfamily T, member 1 ...
OR10A7                0.446   olfactory receptor, family 10, subfamily A, member 7...
OR2T8                 0.444   olfactory receptor, family 2, subfamily T, member 8 ...
OR2J3                 0.442   olfactory receptor, family 2, subfamily J, member 3...
OR13F1                0.439   olfactory receptor, family 13, subfamily F, member 1...
OR5R1                 0.437   olfactory receptor, family 5, subfamily R, member 1 ...
OR2T2                 0.435   olfactory receptor, family 2, subfamily T, member 2 ...
OR2Y1                 0.434   olfactory receptor, family 2, subfamily Y, member 1 ...
OR2J2                 0.434   olfactory receptor, family 2, subfamily J, member 2...
OR13D1                0.434   olfactory receptor, family 13, subfamily D, member 1...
OR2T12                0.432   olfactory receptor, family 2, subfamily T, member 12...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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