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Search of human proteins with 4885579
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885579 RCD1 required for cell differentiation1 homolog
[Homo sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885579 RCD1 required for cell differentiation1 homolog [Homo... 593 e-170
gi|67763814 death-inducing-protein [Homo sapiens] 31 1.5
gi|125625350 cell division cycle 25C isoform a [Homo sapiens] 30 3.4
gi|12408658 cell division cycle 25C isoform b [Homo sapiens] 30 3.4
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 30 3.4
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 29 5.8
gi|224994189 prominin 1 isoform 2 [Homo sapiens] 28 7.5
gi|224994199 prominin 1 isoform 4 [Homo sapiens] 28 7.5
gi|224994197 prominin 1 isoform 5 [Homo sapiens] 28 7.5
gi|224994195 prominin 1 isoform 6 [Homo sapiens] 28 7.5
gi|224994193 prominin 1 isoform 7 [Homo sapiens] 28 7.5
gi|224994191 prominin 1 isoform 2 [Homo sapiens] 28 7.5
gi|5174387 prominin 1 isoform 1 [Homo sapiens] 28 7.5
gi|18104993 protein tyrosine phosphatase, non-receptor type 6 is... 28 7.5
gi|18104989 protein tyrosine phosphatase, non-receptor type 6 is... 28 7.5
gi|18104991 protein tyrosine phosphatase, non-receptor type 6 is... 28 7.5
gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens] 28 9.8
>gi|4885579 RCD1 required for cell differentiation1 homolog [Homo
sapiens]
Length = 299
Score = 593 bits (1528), Expect = e-170
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 60
MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF
Sbjct: 1 MHSLATAAPVPTTLAQVDREKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSF 60
Query: 61 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 120
GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY
Sbjct: 61 GTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLY 120
Query: 121 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 180
PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT
Sbjct: 121 PFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKT 180
Query: 181 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 240
VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS
Sbjct: 181 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 240
Query: 241 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ 299
DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ
Sbjct: 241 DNPRAREALRQCLPDQLKDTTFAQVLKDDTTTKRWLAQLVKNLQEGQVTDPRGIPLPPQ 299
>gi|67763814 death-inducing-protein [Homo sapiens]
Length = 578
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 24 QW--INELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINP 79
QW + E+S P L +S+K + V D+A + FG +A +L++I N++ + P
Sbjct: 275 QWSIVPEVSEPVEPPKEDLTVSEKFQLVLDVAQKAQNLFGKMADILEKIKNLFMWVQP 332
>gi|125625350 cell division cycle 25C isoform a [Homo sapiens]
Length = 473
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 103 HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTE 162
+PET +A L+ + F + + P+EYL + GAL ++E+ NF L
Sbjct: 306 NPETVAALLSGKFQGLIEKF-YVIDCRYPYEYL---GGHIQGALNLYSQEELFNFFLKKP 361
Query: 163 IIPL 166
I+PL
Sbjct: 362 IVPL 365
>gi|12408658 cell division cycle 25C isoform b [Homo sapiens]
Length = 400
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 103 HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTE 162
+PET +A L+ + F + + P+EYL + GAL ++E+ NF L
Sbjct: 233 NPETVAALLSGKFQGLIEKF-YVIDCRYPYEYL---GGHIQGALNLYSQEELFNFFLKKP 288
Query: 163 IIPL 166
I+PL
Sbjct: 289 IVPL 292
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 29.6 bits (65), Expect = 3.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 30 SSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIV 71
SSPE R+ L L K E L +LW +A+ LQE V
Sbjct: 468 SSPEDRDQGLFLLRKDSERRAILYKILWEEQNQVASNLQECV 509
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 28.9 bits (63), Expect = 5.8
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 75 PSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHT 125
PSI+P V L LQC A P + + H P L P+L T
Sbjct: 339 PSIHPAHSFRQPPEMVPQQLGSLQCSALLPREKELACSPHPPKLLQPWLET 389
>gi|224994189 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 28.5 bits (62), Expect = 7.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 19 REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEI-VNIYPSI 77
R I ++E+ S T A+ E + E++ L +++ L + ++ S+
Sbjct: 237 RPNIIPVLDEIKSMAT---AIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSL 293
Query: 78 NPPTLTAHQSNRVCNALAL-LQCVASHPETR 107
N P H S+ CN++ L L + S+PE R
Sbjct: 294 NDPLCLVHPSSETCNSIRLSLSQLNSNPELR 324
>gi|224994199 prominin 1 isoform 4 [Homo sapiens]
Length = 825
Score = 28.5 bits (62), Expect = 7.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 19 REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEI-VNIYPSI 77
R I ++E+ S T A+ E + E++ L +++ L + ++ S+
Sbjct: 237 RPNIIPVLDEIKSMAT---AIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSL 293
Query: 78 NPPTLTAHQSNRVCNALAL-LQCVASHPETR 107
N P H S+ CN++ L L + S+PE R
Sbjct: 294 NDPLCLVHPSSETCNSIRLSLSQLNSNPELR 324
>gi|224994197 prominin 1 isoform 5 [Homo sapiens]
Length = 833
Score = 28.5 bits (62), Expect = 7.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 19 REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEI-VNIYPSI 77
R I ++E+ S T A+ E + E++ L +++ L + ++ S+
Sbjct: 237 RPNIIPVLDEIKSMAT---AIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSL 293
Query: 78 NPPTLTAHQSNRVCNALAL-LQCVASHPETR 107
N P H S+ CN++ L L + S+PE R
Sbjct: 294 NDPLCLVHPSSETCNSIRLSLSQLNSNPELR 324
>gi|224994195 prominin 1 isoform 6 [Homo sapiens]
Length = 834
Score = 28.5 bits (62), Expect = 7.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 19 REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEI-VNIYPSI 77
R I ++E+ S T A+ E + E++ L +++ L + ++ S+
Sbjct: 246 RPNIIPVLDEIKSMAT---AIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSL 302
Query: 78 NPPTLTAHQSNRVCNALAL-LQCVASHPETR 107
N P H S+ CN++ L L + S+PE R
Sbjct: 303 NDPLCLVHPSSETCNSIRLSLSQLNSNPELR 333
>gi|224994193 prominin 1 isoform 7 [Homo sapiens]
Length = 842
Score = 28.5 bits (62), Expect = 7.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 19 REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEI-VNIYPSI 77
R I ++E+ S T A+ E + E++ L +++ L + ++ S+
Sbjct: 246 RPNIIPVLDEIKSMAT---AIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSL 302
Query: 78 NPPTLTAHQSNRVCNALAL-LQCVASHPETR 107
N P H S+ CN++ L L + S+PE R
Sbjct: 303 NDPLCLVHPSSETCNSIRLSLSQLNSNPELR 333
>gi|224994191 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 28.5 bits (62), Expect = 7.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 19 REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEI-VNIYPSI 77
R I ++E+ S T A+ E + E++ L +++ L + ++ S+
Sbjct: 237 RPNIIPVLDEIKSMAT---AIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSL 293
Query: 78 NPPTLTAHQSNRVCNALAL-LQCVASHPETR 107
N P H S+ CN++ L L + S+PE R
Sbjct: 294 NDPLCLVHPSSETCNSIRLSLSQLNSNPELR 324
>gi|5174387 prominin 1 isoform 1 [Homo sapiens]
Length = 865
Score = 28.5 bits (62), Expect = 7.5
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 19 REKIYQWINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEI-VNIYPSI 77
R I ++E+ S T A+ E + E++ L +++ L + ++ S+
Sbjct: 246 RPNIIPVLDEIKSMAT---AIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSL 302
Query: 78 NPPTLTAHQSNRVCNALAL-LQCVASHPETR 107
N P H S+ CN++ L L + S+PE R
Sbjct: 303 NDPLCLVHPSSETCNSIRLSLSQLNSNPELR 333
>gi|18104993 protein tyrosine phosphatase, non-receptor type 6
isoform 3 [Homo sapiens]
Length = 624
Score = 28.5 bits (62), Expect = 7.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 36 ENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNAL 94
EN +LEL+KK+ES W F ++ QE+ N++ + NR N L
Sbjct: 224 ENRVLELNKKQESEDTAKAGFWEEFESLQK--QEVKNLHQRLEGQRPENKGKNRYKNIL 280
>gi|18104989 protein tyrosine phosphatase, non-receptor type 6
isoform 1 [Homo sapiens]
Length = 595
Score = 28.5 bits (62), Expect = 7.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 36 ENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNAL 94
EN +LEL+KK+ES W F ++ QE+ N++ + NR N L
Sbjct: 224 ENRVLELNKKQESEDTAKAGFWEEFESLQK--QEVKNLHQRLEGQRPENKGKNRYKNIL 280
>gi|18104991 protein tyrosine phosphatase, non-receptor type 6
isoform 2 [Homo sapiens]
Length = 597
Score = 28.5 bits (62), Expect = 7.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 36 ENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNAL 94
EN +LEL+KK+ES W F ++ QE+ N++ + NR N L
Sbjct: 226 ENRVLELNKKQESEDTAKAGFWEEFESLQK--QEVKNLHQRLEGQRPENKGKNRYKNIL 282
>gi|169218206 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 317
Score = 28.1 bits (61), Expect = 9.8
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 7 AAPVPTTLAQVDREKIYQWINELSSPETRE--NALLELSKKRE------SVPDLAPMLWH 58
A+PV + R+ +Y+W +EL SP+ E LL+L E + DLA +H
Sbjct: 149 ASPVVEKRCPLQRDGVYRWFSELPSPQRVEFLCGLLDLCMPLEVRFFGSCLEDLARKDYH 208
Query: 59 S 59
S
Sbjct: 209 S 209
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,996,773
Number of Sequences: 37866
Number of extensions: 432728
Number of successful extensions: 955
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 17
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.