Guide to the Human Genome
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Name: RQCD1 Sequence: fasta or formatted (299aa) NCBI GI: 4885579
Description:

RCD1 required for cell differentiation1 homolog

Referenced in:

RNA Polymerase and General Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         24           2
 C cysteine            2.0          6           1
 D aspartate           3.7         11           2
 E glutamate           6.0         18           1
 F phenylalanine       3.0          9           1
 G glycine             2.7          8           1
 H histidine           2.7          8           1
 I isoleucine          5.7         17           2
 K lysine              4.7         14           2
 L leucine            15.4         46           2
 M methionine          1.7          5           1
 N asparagine          3.0          9           1
 P proline             6.7         20           2
 Q glutamine           5.4         16           1
 R arginine            5.7         17           1
 S serine              6.4         19           2
 T threonine           8.0         24           3
 V valine              6.0         18           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RCD1 required for cell differentiation1 homolog [Homo... 
GRAMD4                0.011   death-inducing-protein 
CDC25C                0.009   cell division cycle 25C isoform a 
CDC25C                0.009   cell division cycle 25C isoform b 
MAP3K15               0.009   mitogen-activated protein kinase kinase kinase 15 [...
TRIM66                0.007   tripartite motif-containing 66 
PROM1                 0.005   prominin 1 isoform 2 
PROM1                 0.005   prominin 1 isoform 4 
PROM1                 0.005   prominin 1 isoform 5 
PROM1                 0.005   prominin 1 isoform 6 
PROM1                 0.005   prominin 1 isoform 7 
PROM1                 0.005   prominin 1 isoform 2 
PROM1                 0.005   prominin 1 isoform 1 
PTPN6                 0.005   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.005   protein tyrosine phosphatase, non-receptor type 6 is...
PTPN6                 0.005   protein tyrosine phosphatase, non-receptor type 6 is...
LOC388079             0.005   PREDICTED: similar to hCG2042704 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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