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Search of human proteins with 4759046
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
(342 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens] 694 0.0
gi|42560246 RNA polymerase I subunit isoform 1 [Homo sapiens] 619 e-177
gi|14702171 DNA directed RNA polymerase II polypeptide C [Homo s... 100 1e-21
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 55 1e-07
gi|116256455 zinc finger protein 429 [Homo sapiens] 46 6e-05
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens] 42 6e-04
gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ... 40 0.002
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ... 40 0.002
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ... 40 0.002
gi|148277022 selenoprotein P isoform 2 [Homo sapiens] 38 0.015
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot... 37 0.020
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s... 36 0.057
gi|144953913 zinc finger protein 714 [Homo sapiens] 36 0.057
gi|33356179 transcription termination factor, RNA polymerase I [... 35 0.13
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens] 34 0.22
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens] 34 0.22
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens] 34 0.22
gi|59859882 baculoviral IAP repeat-containing protein 5 isoform ... 30 2.4
gi|45331213 RAN binding protein 6 [Homo sapiens] 30 3.1
gi|224831257 importin 13 [Homo sapiens] 29 5.3
gi|54873613 agrin [Homo sapiens] 29 5.3
gi|154091028 sorting nexin 29 [Homo sapiens] 29 5.3
gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo sap... 29 7.0
gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo sa... 29 7.0
gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens] 28 9.1
gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens] 28 9.1
>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
Length = 342
Score = 694 bits (1792), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180
LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
Sbjct: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180
Query: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300
LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300
Query: 301 RVRDHYICKKDLLAAVAHTCNPSTLGGQGEWITGSRERDHPG 342
RVRDHYICKKDLLAAVAHTCNPSTLGGQGEWITGSRERDHPG
Sbjct: 301 RVRDHYICKKDLLAAVAHTCNPSTLGGQGEWITGSRERDHPG 342
>gi|42560246 RNA polymerase I subunit isoform 1 [Homo sapiens]
Length = 346
Score = 619 bits (1595), Expect = e-177
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180
LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN
Sbjct: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180
Query: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300
LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA
Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300
Query: 301 RVRDHYI 307
RVRDHYI
Sbjct: 301 RVRDHYI 307
>gi|14702171 DNA directed RNA polymerase II polypeptide C [Homo
sapiens]
Length = 275
Score = 100 bits (250), Expect = 1e-21
Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 15/199 (7%)
Query: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
V + + + +++F + D A+AN+ RR+ +AEVP +A++ V + N+S++ DE +AHRL
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHK 167
GLIP+ +D + + + D EE +++F L VRC + D +
Sbjct: 69 GLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRC---------NEDQTRHVTSRD 119
Query: 168 VYTRHMTWIPL-GNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFS 226
+ + IP+ D P + DDILI +LR GQE+ L + KG GK+HAK++
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVE--QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 227 PVATASYRLLPDITLLEPV 245
P A ++ PD L V
Sbjct: 178 PTAGVAFEYDPDNALRHTV 196
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 54.7 bits (130), Expect = 1e-07
Identities = 23/30 (76%), Positives = 25/30 (83%)
Query: 313 LAAVAHTCNPSTLGGQGEWITGSRERDHPG 342
L AVAH CNPSTLGG+G WIT S +RDHPG
Sbjct: 345 LGAVAHACNPSTLGGRGGWITRSGDRDHPG 374
>gi|116256455 zinc finger protein 429 [Homo sapiens]
Length = 674
Score = 45.8 bits (107), Expect = 6e-05
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 291 EKLKKVVRLARVRDHYICKKDLLAAVAHTCNPSTLGGQGEWITGSRERDHPG 342
E K R +R+ H K + VAH CNPSTLGG+G IT S +RD PG
Sbjct: 625 ECAKAFTRSSRLTQHK--KIHRMGVVAHACNPSTLGGRGGRITRSGDRDRPG 674
>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
Length = 881
Score = 42.4 bits (98), Expect = 6e-04
Identities = 20/27 (74%), Positives = 20/27 (74%)
Query: 315 AVAHTCNPSTLGGQGEWITGSRERDHP 341
AVAH CNPSTLGGQG IT S RD P
Sbjct: 474 AVAHACNPSTLGGQGGRITRSGVRDQP 500
>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
sapiens]
Length = 120
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 306 YICKKDL-LAAVAHTCNPSTLGGQGEWITGSRE 337
YI K+ L L VAHT NPSTLGG+G WIT +E
Sbjct: 74 YIKKERLWLGPVAHTYNPSTLGGRGGWITRGQE 106
>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
sapiens]
Length = 120
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 306 YICKKDL-LAAVAHTCNPSTLGGQGEWITGSRE 337
YI K+ L L VAHT NPSTLGG+G WIT +E
Sbjct: 74 YIKKERLWLGPVAHTYNPSTLGGRGGWITRGQE 106
>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
sapiens]
Length = 120
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 306 YICKKDL-LAAVAHTCNPSTLGGQGEWITGSRE 337
YI K+ L L VAHT NPSTLGG+G WIT +E
Sbjct: 74 YIKKERLWLGPVAHTYNPSTLGGRGGWITRGQE 106
>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
Length = 411
Score = 37.7 bits (86), Expect = 0.015
Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 313 LAAVAHTCNPSTLGGQGEWIT 333
L AVAH CNPSTLGGQG IT
Sbjct: 5 LDAVAHACNPSTLGGQGRRIT 25
>gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 2 [Homo sapiens]
Length = 566
Score = 37.4 bits (85), Expect = 0.020
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 315 AVAHTCNPSTLGGQGEWI 332
AVAH C PSTLGGQG WI
Sbjct: 548 AVAHACYPSTLGGQGRWI 565
>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
Length = 291
Score = 35.8 bits (81), Expect = 0.057
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 312 LLAAVAHTCNPSTLGGQGEWITGS 335
L AVAH CNPSTLGG+G IT S
Sbjct: 264 LPGAVAHACNPSTLGGRGGRITRS 287
>gi|144953913 zinc finger protein 714 [Homo sapiens]
Length = 555
Score = 35.8 bits (81), Expect = 0.057
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 316 VAHTCNPSTLGGQGEWITGSRERDHPG 342
VAH CNP+TL G GE I S +D PG
Sbjct: 507 VAHACNPNTLRGLGEQIARSGVQDQPG 533
>gi|33356179 transcription termination factor, RNA polymerase I
[Homo sapiens]
Length = 905
Score = 34.7 bits (78), Expect = 0.13
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 316 VAHTCNPSTLGGQGEWI 332
+AH CN STLGGQG WI
Sbjct: 888 MAHACNSSTLGGQGRWI 904
>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 33.9 bits (76), Expect = 0.22
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 314 AAVAHTCNPSTLGGQGEWITGSRE 337
+ V HTCNPSTLGG+G I +E
Sbjct: 80 SVVPHTCNPSTLGGRGGQIPSGQE 103
>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 33.9 bits (76), Expect = 0.22
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 314 AAVAHTCNPSTLGGQGEWITGSRE 337
+ V HTCNPSTLGG+G I +E
Sbjct: 80 SVVPHTCNPSTLGGRGGQIPSGQE 103
>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 33.9 bits (76), Expect = 0.22
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 314 AAVAHTCNPSTLGGQGEWITGSRE 337
+ V HTCNPSTLGG+G I +E
Sbjct: 80 SVVPHTCNPSTLGGRGGQIPSGQE 103
>gi|59859882 baculoviral IAP repeat-containing protein 5 isoform 3
[Homo sapiens]
Length = 165
Score = 30.4 bits (67), Expect = 2.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 316 VAHTCNPSTLGGQGEWITGSRERDH 340
VA+ CN STLGG+G IT + H
Sbjct: 79 VAYACNTSTLGGRGGRITREEHKKH 103
>gi|45331213 RAN binding protein 6 [Homo sapiens]
Length = 1105
Score = 30.0 bits (66), Expect = 3.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 68 IDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHAD 118
I A + + ++ E A+ K+L + + DE+L H L +P+H D
Sbjct: 963 IKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHED 1013
>gi|224831257 importin 13 [Homo sapiens]
Length = 963
Score = 29.3 bits (64), Expect = 5.3
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 239 ITLLEPVEGEAAEELSRCF---------------SPGVIEVQEVQGKKVARVANPRLDTF 283
I +LE + G+A+ L CF S + E + G AR++ + DTF
Sbjct: 867 IAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTF 926
Query: 284 SREIFRNEKLKKVVR 298
S++I R K+ V+
Sbjct: 927 SQQILRERVNKRRVK 941
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 29.3 bits (64), Expect = 5.3
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 13/58 (22%)
Query: 260 GVIEVQEVQGKKV---ARVANPRLDTFSR----------EIFRNEKLKKVVRLARVRD 304
GV+E++ V+G+++ +A+P+ + F ++FRN +KK R R+RD
Sbjct: 1136 GVLELEGVEGQELFYTPEMADPKSELFGETARSIESTLDDLFRNSDVKKDFRSVRLRD 1193
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 29.3 bits (64), Expect = 5.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 238 DITLLEPVEGEAAEELSRCFSPGVIEVQEVQGKKV 272
++T+ E GE AEEL+ + +IEV E+ G+ +
Sbjct: 184 EVTVAEQKPGEIAEELASSYERKLIEVAEMHGELI 218
>gi|7661858 Rho GTPase activating protein 11A isoform 1 [Homo
sapiens]
Length = 1023
Score = 28.9 bits (63), Expect = 7.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 265 QEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRL 299
+ + GKKV RV + + FS +I EK+++ +RL
Sbjct: 403 KRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRL 437
>gi|40788018 Rho GTPase activating protein 11A isoform 2 [Homo
sapiens]
Length = 501
Score = 28.9 bits (63), Expect = 7.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 265 QEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRL 299
+ + GKKV RV + + FS +I EK+++ +RL
Sbjct: 403 KRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRL 437
>gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens]
Length = 378
Score = 28.5 bits (62), Expect = 9.1
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 321 NPSTLGGQGEWI 332
NPSTLGGQG WI
Sbjct: 366 NPSTLGGQGVWI 377
>gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 9.1
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 321 NPSTLGGQGEWI 332
NPSTLGGQG WI
Sbjct: 452 NPSTLGGQGVWI 463
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,909,924
Number of Sequences: 37866
Number of extensions: 552249
Number of successful extensions: 985
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 26
length of query: 342
length of database: 18,247,518
effective HSP length: 103
effective length of query: 239
effective length of database: 14,347,320
effective search space: 3429009480
effective search space used: 3429009480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.