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Search of human proteins with 4758250
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758250 ephrin B2 [Homo sapiens]
(333 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758250 ephrin B2 [Homo sapiens] 682 0.0
gi|4758248 ephrin-B1 precursor [Homo sapiens] 363 e-100
gi|4503489 ephrin-B3 precursor [Homo sapiens] 242 3e-64
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 67 2e-11
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 66 4e-11
gi|4826708 ephrin A3 [Homo sapiens] 62 9e-10
gi|4503487 ephrin-A5 [Homo sapiens] 61 1e-09
gi|27894381 ephrin-A2 precursor [Homo sapiens] 60 3e-09
gi|4885197 ephrin A4 isoform a [Homo sapiens] 59 6e-09
gi|33359686 ephrin A4 isoform b [Homo sapiens] 59 8e-09
gi|100913200 ephrin A4 isoform c [Homo sapiens] 56 5e-08
gi|219689132 solute carrier family 38, member 4 [Homo sapiens] 33 0.27
gi|18482385 solute carrier family 38, member 4 [Homo sapiens] 33 0.27
gi|86793109 complement receptor 1 isoform S precursor [Homo sapi... 32 0.79
gi|86793036 complement receptor 1 isoform F precursor [Homo sapi... 32 0.79
gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B... 32 1.0
gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B... 32 1.0
gi|208431815 protein tyrosine phosphatase, receptor type, K isof... 31 1.3
gi|18860902 protein tyrosine phosphatase, receptor type, K isofo... 31 1.3
gi|109809759 leucine rich repeat transmembrane neuronal 3 [Homo ... 31 1.3
gi|239747450 PREDICTED: similar to phosphodiesterase 4D interact... 31 1.8
gi|187423904 solute carrier family 3, member 1 [Homo sapiens] 30 2.3
gi|38372901 Sp1 transcription factor isoform a [Homo sapiens] 30 3.0
gi|218751903 Sp1 transcription factor isoform b [Homo sapiens] 30 3.0
gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B... 30 3.0
gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B... 30 3.0
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 30 3.9
gi|7705887 hypothetical protein LOC51161 [Homo sapiens] 30 3.9
gi|16933525 unc5C [Homo sapiens] 29 5.1
gi|60097902 filaggrin [Homo sapiens] 29 5.1
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 682 bits (1761), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Query: 1 MAVRRDSVWKYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDI 60
MAVRRDSVWKYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDI
Sbjct: 1 MAVRRDSVWKYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDI 60
Query: 61 ICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPN 120
ICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPN
Sbjct: 61 ICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPN 120
Query: 121 LWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPT 180
LWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPT
Sbjct: 121 LWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPT 180
Query: 181 RRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIV 240
RRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIV
Sbjct: 181 RRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIV 240
Query: 241 IIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDIIIPLRTADSVF 300
IIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDIIIPLRTADSVF
Sbjct: 241 IIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDIIIPLRTADSVF 300
Query: 301 CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 333
CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
Sbjct: 301 CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 333
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 363 bits (932), Expect = e-100
Identities = 191/343 (55%), Positives = 238/343 (69%), Gaps = 22/343 (6%)
Query: 9 WKYCWGVLMV---LCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKV 65
W W V MV LCR A + LEP+ W+S N KFL G+GLV+YP+IGDKLDIICP+
Sbjct: 8 WLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRA 67
Query: 66 DSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLE 125
++ YEYYK+Y+V +QA C+ + L+ C +P+Q+I+FTIKFQEFSPN GLE
Sbjct: 68 EAGR--PYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEFSPNYMGLE 125
Query: 126 FQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPTRRPEL 185
F+K+ DYYI STSNGSLEGL+N+EGGVC+TR MKI+MKVGQD ++ T + T RP
Sbjct: 126 FKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAV--TPEQLTTSRPSK 183
Query: 186 EAGTNGRSSTTSPFVKPNPGSSTD-------------GNSAGHSGN--NILGSEVALFAG 230
EA + +T +P + + G S G S G SG+ S+VALFA
Sbjct: 184 EADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFNSKVALFAA 243
Query: 231 IASGCIIFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDII 290
+ +GC+IF++III L VLLLK R+RHRKH+ Q LSLSTLA+PK G+EPSDII
Sbjct: 244 VGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTAGTEPSDII 303
Query: 291 IPLRTADSVFCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 333
IPLRT ++ +CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
Sbjct: 304 IPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV 346
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 242 bits (618), Expect = 3e-64
Identities = 135/330 (40%), Positives = 187/330 (56%), Gaps = 13/330 (3%)
Query: 14 GVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKV---DSKTV 70
G L++L + + LEP+YWNS+N +F G VLYPQIGD+LD++CP+ +
Sbjct: 14 GALLLLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSS 73
Query: 71 GQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 130
YE+YK+Y+V Q RC LL C +PD D++FTIKFQE+SPNLWG EF+ +
Sbjct: 74 PNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHH 133
Query: 131 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPTRRPELEAGTN 190
DYYII+TS+G+ EGL++ +GGVC TR MK+L++VGQ S G + P +E
Sbjct: 134 DYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQ--SPRGGAVPRKPVSEMPMER-DR 190
Query: 191 GRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIVIIITLVVLLL 250
G + + P + PG T ++ + + + AG A G + ++ + +
Sbjct: 191 GAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMC 250
Query: 251 KYRRRHRKHSPQHTTTLSLSTLATPKRSGNN----NGSEPSDIIIPLR---TADSVFCPH 303
RRR + +H S + G +EP ++ I LR AD FCPH
Sbjct: 251 WRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPFCPH 310
Query: 304 YEKVSGDYGHPVYIVQEMPPQSPANIYYKV 333
YEKVSGDYGHPVYIVQ+ PPQSP NIYYKV
Sbjct: 311 YEKVSGDYGHPVYIVQDGPPQSPPNIYYKV 340
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 67.0 bits (162), Expect = 2e-11
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 10 KYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKT 69
++ W L+ LC + + ++WNSSN KF + ++ Q+ D +DIICP + +
Sbjct: 2 EFLWAPLLGLCCSLAAAD--RHTVFWNSSNPKFR-NEDYTIHVQLNDYVDIICPHYEDHS 58
Query: 70 VGQ--YEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDI---KFTIKFQEFSPNLWGL 124
V E Y +Y+V+ ++ C + ++ C +P K + KFQ F+P G
Sbjct: 59 VADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 118
Query: 125 EFQKNKDYYIISTS 138
EF++ YY IS S
Sbjct: 119 EFKEGHSYYYISHS 132
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 66.2 bits (160), Expect = 4e-11
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 10 KYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKT 69
++ W L+ LC + + ++WNSSN KF + ++ Q+ D +DIICP + +
Sbjct: 2 EFLWAPLLGLCCSLAAAD--RHTVFWNSSNPKFR-NEDYTIHVQLNDYVDIICPHYEDHS 58
Query: 70 VGQ--YEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDI---KFTIKFQEFSPNLWGL 124
V E Y +Y+V+ ++ C + ++ C +P K + KFQ F+P G
Sbjct: 59 VADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 118
Query: 125 EFQKNKDYYIIS 136
EF++ YY IS
Sbjct: 119 EFKEGHSYYYIS 130
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 61.6 bits (148), Expect = 9e-10
Identities = 52/184 (28%), Positives = 73/184 (39%), Gaps = 27/184 (14%)
Query: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQ---------YEYYKVYMVDK 83
+YWNSSN + L +G + + D LDI CP +S VG E Y +YMV +
Sbjct: 35 VYWNSSN-QHLRREGYTVQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSR 93
Query: 84 DQADRCTIKKENTPLLNCAKPD---QDIKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNG 140
+ C + C +P IKF+ KFQ +S G EF +YY IST
Sbjct: 94 NGYRTCNAS-QGFKRWECNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTH 152
Query: 141 SLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPTRRPELEAGTNGRSSTTSPFV 200
+L + MKV +S + K P+ G N + + F
Sbjct: 153 NLHW-------------KCLRMKVFVCCASTSHSGEKPVPTLPQFTMGPNVKINVLEDFE 199
Query: 201 KPNP 204
NP
Sbjct: 200 GENP 203
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 61.2 bits (147), Expect = 1e-09
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKV-DSKTVGQYEYYKVYMVDKDQADRCTI 91
+YWNSSN +F G + I D LD+ CP DS + E Y +YMV+ D C
Sbjct: 34 VYWNSSNPRFQRGD-YHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDH 92
Query: 92 KKENTPLLNCAKPDQD---IKFTIKFQEFSPNLWGLEFQKNKDYYIISTS 138
+ C +P +KF+ KFQ F+P G EF+ ++Y+ IS++
Sbjct: 93 TSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSA 142
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 33 IYWNSSNSKFLPGQG-----LVLYPQIGDKLDIICPKVDSKT--VGQYEYYKVYMVDKDQ 85
+YWN SN +F G G + I D LDI CP + + E+Y +YMV+ +
Sbjct: 39 VYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEG 98
Query: 86 ADRCTIKKENTPLLNC---AKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIISTS 138
C ++ C A P +KF+ KFQ F+P G EF+ +YY IS +
Sbjct: 99 HASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISAT 154
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 58.9 bits (141), Expect = 6e-09
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 5/145 (3%)
Query: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQY-EYYKVYMVDKDQADRCTI 91
+YWNSSN + L G +V + D LDI+CP + + E + +YMVD + C
Sbjct: 30 VYWNSSNPRLLRGDAVVELG-LNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQA 88
Query: 92 KKENT-PLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIIS--TSNGSLEGLDNQ 148
+ C+ P ++F+ K Q F+P G EF + YY IS T S + L Q
Sbjct: 89 EGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQ 148
Query: 149 EGGVCQTRAMKILMKVGQDASSAGS 173
C+ R + VG S S
Sbjct: 149 VSVCCKERKSESAHPVGSPGESGTS 173
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 58.5 bits (140), Expect = 8e-09
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQY-EYYKVYMVDKDQADRCTI 91
+YWNSSN + L G +V + D LDI+CP + + E + +YMVD + C
Sbjct: 30 VYWNSSNPRLLRGDAVVELG-LNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQA 88
Query: 92 KKENT-PLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIIS--TSNGSLEGLDNQ 148
+ C+ P ++F+ K Q F+P G EF + YY IS T S + L Q
Sbjct: 89 EGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQ 148
Query: 149 EGGVCQTRAMKIL 161
C+ R ++L
Sbjct: 149 VSVCCKERRARVL 161
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 55.8 bits (133), Expect = 5e-08
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQY-EYYKVYMVDKDQADRCTI 91
+YWNSSN + L G +V + D LDI+CP + + E + +YMVD + C
Sbjct: 30 VYWNSSNPRLLRGDAVVELG-LNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQA 88
Query: 92 KKENT-PLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIIS--TSNGSLEGLDNQ 148
+ C+ P ++F+ K Q F+P G EF + YY IS T S + L Q
Sbjct: 89 EGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQ 148
Query: 149 EGGVCQTR 156
C+ R
Sbjct: 149 VSVCCKER 156
>gi|219689132 solute carrier family 38, member 4 [Homo sapiens]
Length = 547
Score = 33.5 bits (75), Expect = 0.27
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 166 QDASSAGSTRNKDPTRRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEV 225
+ A+ + N+D + L G G+ + +PG+++ G S+ + N I+GS +
Sbjct: 34 EKAAMSSQFANEDTESQKFLTNGFLGKKKLADYADEHHPGTTSFGMSSFNLSNAIMGSGI 93
Query: 226 --ALFAGIASGCIIFIVIIITLVVLLL 250
+A +G I+FI++++ + +L L
Sbjct: 94 LGLSYAMANTGIILFIIMLLAVAILSL 120
>gi|18482385 solute carrier family 38, member 4 [Homo sapiens]
Length = 547
Score = 33.5 bits (75), Expect = 0.27
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 166 QDASSAGSTRNKDPTRRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEV 225
+ A+ + N+D + L G G+ + +PG+++ G S+ + N I+GS +
Sbjct: 34 EKAAMSSQFANEDTESQKFLTNGFLGKKKLADYADEHHPGTTSFGMSSFNLSNAIMGSGI 93
Query: 226 --ALFAGIASGCIIFIVIIITLVVLLL 250
+A +G I+FI++++ + +L L
Sbjct: 94 LGLSYAMANTGIILFIIMLLAVAILSL 120
>gi|86793109 complement receptor 1 isoform S precursor [Homo sapiens]
Length = 2489
Score = 32.0 bits (71), Expect = 0.79
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 226 ALFAGIASGCIIFIVIIITLVVLLLKYRRRHRKH 259
AL G SG I FI++II L ++LK+R+ + H
Sbjct: 2422 ALIVGTLSGTIFFILLIIFLSWIILKHRKGNNAH 2455
>gi|86793036 complement receptor 1 isoform F precursor [Homo sapiens]
Length = 2039
Score = 32.0 bits (71), Expect = 0.79
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 226 ALFAGIASGCIIFIVIIITLVVLLLKYRRRHRKH 259
AL G SG I FI++II L ++LK+R+ + H
Sbjct: 1972 ALIVGTLSGTIFFILLIIFLSWIILKHRKGNNAH 2005
>gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 4 [Homo sapiens]
Length = 651
Score = 31.6 bits (70), Expect = 1.0
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 189 TNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIVIIITLVVL 248
T G +ST+ P +P + +D S LG + + GI + VI++ L++L
Sbjct: 430 TTGPTSTSGPEDQPLTPTGSDPQSG-------LGRHLGVVIGI-----LVAVILLLLLLL 477
Query: 249 LLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSD 288
LL RHR+ T+T + P G EP+D
Sbjct: 478 LLFLILRHRRQGKHWTSTQRKADFQHP---AGAVGPEPTD 514
>gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 1 [Homo sapiens]
Length = 650
Score = 31.6 bits (70), Expect = 1.0
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 189 TNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIVIIITLVVL 248
T G +ST+ P +P + +D S LG + + GI + VI++ L++L
Sbjct: 430 TTGPTSTSGPEDQPLTPTGSDPQSG-------LGRHLGVVIGI-----LVAVILLLLLLL 477
Query: 249 LLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSD 288
LL RHR+ T+T + P G EP+D
Sbjct: 478 LLFLILRHRRQGKHWTSTQRKADFQHP---AGAVGPEPTD 514
>gi|208431815 protein tyrosine phosphatase, receptor type, K isoform
a [Homo sapiens]
Length = 1446
Score = 31.2 bits (69), Expect = 1.3
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 193 SSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIVIIITLVVLLLKY 252
++T P V P+P TD V AGI++G ++FI++++ +++++ K
Sbjct: 733 AATEEPEVIPDPAKQTD--------------RVVKIAGISAGILVFILLLLVVILIVKKS 778
Query: 253 RRRHRKHSPQHTT 265
+ ++ T
Sbjct: 779 KLAKKRKDAMGNT 791
>gi|18860902 protein tyrosine phosphatase, receptor type, K isoform
b [Homo sapiens]
Length = 1440
Score = 31.2 bits (69), Expect = 1.3
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 14/73 (19%)
Query: 193 SSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIVIIITLVVLLLKY 252
++T P V P+P TD V AGI++G ++FI++++ +++++ K
Sbjct: 733 AATEEPEVIPDPAKQTD--------------RVVKIAGISAGILVFILLLLVVILIVKKS 778
Query: 253 RRRHRKHSPQHTT 265
+ ++ T
Sbjct: 779 KLAKKRKDAMGNT 791
>gi|109809759 leucine rich repeat transmembrane neuronal 3 [Homo
sapiens]
Length = 581
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 179 PTRRPELEAGTNGRSSTTSPFV-KPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCII 237
PT +P+L + P V PG TD ++ S + I+ VALF +
Sbjct: 378 PTFKPKLPRPKHESKPPLPPTVGATEPGPETDADAEHISFHKIIAGSVALFLSV------ 431
Query: 238 FIVIIITLVVLLLKY------------RRRHRKHSPQHTTTLSLST 271
+VI++ + V +Y RRHRK Q ++ ST
Sbjct: 432 -LVILLVIYVSWKRYPASMKQLQQRSLMRRHRKKKRQSLKQMTPST 476
>gi|239747450 PREDICTED: similar to phosphodiesterase 4D interacting
protein [Homo sapiens]
Length = 236
Score = 30.8 bits (68), Expect = 1.8
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 169 SSAGSTRNKDPTRRPELEAGTNGRSSTTSPFVKPNP---GSSTDGNSAGHSGNNILG--- 222
SSA ST + + TNG TSP +K P G +TDG+ A G +++G
Sbjct: 27 SSASSTSGSETA----IINRTNGLGLDTSPVMKTPPKLEGDATDGSFASKHGRHVIGHID 82
Query: 223 SEVALFAGIASGCIIFIVIIITLV 246
AL IA G ++ + I++LV
Sbjct: 83 DYSALRQQIAEGKLL-VKKIVSLV 105
>gi|187423904 solute carrier family 3, member 1 [Homo sapiens]
Length = 685
Score = 30.4 bits (67), Expect = 2.3
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 177 KDPTRRPELEAGTNGRSSTTSPFVK--------PNPGSSTDGNSAGHSGNNILGSEVALF 228
+D ++R +E G T + FV P+PGSSTD + HS ILGS+ F
Sbjct: 3 EDKSKRDSIEMSMKG-CQTNNGFVHNEDILEQTPDPGSSTD--NLKHSTRGILGSQEPDF 59
Query: 229 AGI 231
G+
Sbjct: 60 KGV 62
>gi|38372901 Sp1 transcription factor isoform a [Homo sapiens]
Length = 785
Score = 30.0 bits (66), Expect = 3.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 166 QDASSAGSTRNKDPTRRPELEAGTNG-----RSSTTSPFVKPNPGSSTDGNSAGHSGNN 219
Q S +G T D T +L G NG SS +P K GSST+G++ S N
Sbjct: 82 QGPSQSGGTGELDLTAT-QLSQGANGWQIISSSSGATPTSKEQSGSSTNGSNGSESSKN 139
>gi|218751903 Sp1 transcription factor isoform b [Homo sapiens]
Length = 778
Score = 30.0 bits (66), Expect = 3.0
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 166 QDASSAGSTRNKDPTRRPELEAGTNG-----RSSTTSPFVKPNPGSSTDGNSAGHSGNN 219
Q S +G T D T +L G NG SS +P K GSST+G++ S N
Sbjct: 75 QGPSQSGGTGELDLTAT-QLSQGANGWQIISSSSGATPTSKEQSGSSTNGSNGSESSKN 132
>gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 1 [Homo sapiens]
Length = 632
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 193 SSTTSPFVKPNPGSSTDGNSAGHSGNNILGSE-------VALFAGIASGCIIFIVIIITL 245
S +++P + +P + +GHSG + L + + + G + V+++ L
Sbjct: 399 SYSSNPHLLSHPSEPLELVVSGHSGGSSLPPTGPPSTPGLGRYLEVLIGVSVAFVLLLFL 458
Query: 246 VVLLLKYRRRHRKH 259
++ LL R+RH KH
Sbjct: 459 LLFLLLRRQRHSKH 472
>gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 2 [Homo sapiens]
Length = 631
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 193 SSTTSPFVKPNPGSSTDGNSAGHSGNNILGSE-------VALFAGIASGCIIFIVIIITL 245
S +++P + +P + +GHSG + L + + + G + V+++ L
Sbjct: 399 SYSSNPHLLSHPSEPLELVVSGHSGGSSLPPTGPPSTPGLGRYLEVLIGVSVAFVLLLFL 458
Query: 246 VVLLLKYRRRHRKH 259
++ LL R+RH KH
Sbjct: 459 LLFLLLRRQRHSKH 472
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
sapiens]
Length = 2346
Score = 29.6 bits (65), Expect = 3.9
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 169 SSAGSTRNKDPTRRPELEAGTNGRSSTTSPFVKPNP---GSSTDGNSAGHSGNNILG--- 222
SSA ST P + NG TSP +K P G +TDG+ A G +++G
Sbjct: 2130 SSASST----PGSETPIINRANGLGLDTSPVMKTPPKLEGDATDGSFANKHGRHVIGHID 2185
Query: 223 SEVALFAGIASGCIIFIVIIITLV 246
AL IA G ++ + I++LV
Sbjct: 2186 DYSALRQQIAEGKLL-VKKIVSLV 2208
>gi|7705887 hypothetical protein LOC51161 [Homo sapiens]
Length = 162
Score = 29.6 bits (65), Expect = 3.9
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 168 ASSAGSTRNKDPTRRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVAL 227
AS+ G ++ PT +LE T+G +S T+ + P + D +G
Sbjct: 6 ASARGWFSSRPPTSESDLEPATDGPASETTT-LSPEATTFNDTRIPDAAGGT-------- 56
Query: 228 FAGIASGCIIF-IVIIITLVVLLLKYRRRHRK 258
AG+ + + F I+ +I L V L+ Y R+ ++
Sbjct: 57 -AGVGTMLLSFGIITVIGLAVALVLYIRKKKR 87
>gi|16933525 unc5C [Homo sapiens]
Length = 931
Score = 29.3 bits (64), Expect = 5.1
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 224 EVALFAGIASGCIIFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNG 283
+VAL+ GI I+ + I ++VV L YR+ HR + +L N G
Sbjct: 376 DVALYVGIVIAVIVCLAI--SVVVALFVYRKNHRDFESDIIDSSAL-----------NGG 422
Query: 284 SEPSDIIIPLRTADSVFCPHYEKVSGDYGHPVYIVQEMPPQSP 326
+P +I + +V P + Y PVY + ++ + P
Sbjct: 423 FQPVNIKAARQDLLAV-PPDLTSAAAMYRGPVYALHDVSDKIP 464
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 29.3 bits (64), Expect = 5.1
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 136 STSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPTRRPELEAGTNGRSST 195
+TS G + Q G +R + + G +GS ++ ++ G+ +
Sbjct: 549 TTSQGRSDASHGQSGSRSASRQTRNEEQSGDGTRHSGSRHHEASSQADSSRHSQVGQGQS 608
Query: 196 TSPFVKPNPGSST--DGNSAGHS 216
+ P N GSS D +S GHS
Sbjct: 609 SGPRTSRNQGSSVSQDSDSQGHS 631
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,504,590
Number of Sequences: 37866
Number of extensions: 610833
Number of successful extensions: 1936
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1889
Number of HSP's gapped (non-prelim): 61
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.